Academic Journal
Genome-wide identification and phenotypic characterization of seizure-associated copy number variations in 741,075 individuals
| Τίτλος: | Genome-wide identification and phenotypic characterization of seizure-associated copy number variations in 741,075 individuals |
|---|---|
| Συγγραφείς: | Montanucci, Ludovica, Lewis-Smith, David, Collins, Ryan L., Niestroj, Lisa-Marie, Parthasarathy, Shridhar, Xian, Julie, Ganesan, Shiva, Macnee, Marie, Brünger, Tobias, Thomas, Rhys H., Talkowski, Michael, Motelow, Joshua E., Povysil, Gundula, Dhindsa, Ryan S., Stanley, Kate E., Allen, Andrew S., Goldstein, David B., Feng, Yen-Chen Anne, Howrigan, Daniel P., Abbott, Liam E., Tashman, Katherine, Cerrato, Felecia, Cusick, Caroline, Singh, Tarjinder, Heyne, Henrike, Byrnes, Andrea E., Churchhouse, Claire, Watts, Nick, Solomonson, Matthew, Lal, Dennis, Gupta, Namrata, Neale, Benjamin M., Berkovic, Samuel F., Lerche, Holger, Lowenstein, Daniel H., Cavalleri, Gianpiero L., Cossette, Patrick, Cotsapas, Chris, De Jonghe, Peter, Dixon-Salazar, Tracy, Guerrini, Renzo, Hakonarson, Hakon, Heinzen, Erin L., Helbig, Ingo, Kwan, Patrick, Marson, Anthony G., Petrovski, Slavé, Kamalakaran, Sitharthan, Sisodiya, Sanjay M., Stewart, Randy, Weckhuysen, Sarah, Depondt, Chantal, Dlugos, Dennis J., Scheffer, Ingrid E., Striano, Pasquale, Freyer, Catharine, Krause, Roland, May, Patrick, McKenna, Kevin, Regan, Brigid M., Bennett, Caitlin A., Leech, Stephanie L., Leu, Costin, O'Brien, Terence J., Todaro, Marian, Stamberger, Hannah, Depondti, Chantal, Andrade, Danielle M., Ali, Quratulain Zulfiqar, Sadoway, Tara R., Krestel, Heinz, Schaller, André, Papacostas, Savvas S., Kousiappa, Ioanna, Tanteles, George A., Yiolanda, Christou, Štěrbová, Katalin, Vlčková, Markéta, Sedláčková, Lucie, Laššuthová, Petra, Klein, Karl Martin, Rosenow, Felix, Reif, Philipp S., Knake, Susanne, Neubauer, Bernd A., Zimprich, Friedrich, Feucht, Martha, Reinthaler, Eva, Kunz, Wolfram S., Zsurka, Gábor, Surges, Rainer, Baumgartner, Tobias H., von Wrede, Randi, Pendziwiat, Manuela, Muhle, Hiltrud, Rademacher, Annika, van Baalen, Andreas, von Spiczak, Sarah, Stephani, Ulrich, Afawi, Zaid, Korczyn, Amos D., Kanaan, Moien, Canavati, Christina, Kurlemann, Gerhard, Müller-Schlüter, Karen, Kluger, Gerhard, Häusler, Martin, Blatt, Ilan, Lemke, Johannes R., Krey, Ilona, Weber, Yvonne G., Wolking, Stefan, Becker, Felicitas, Lauxmann, Stephan, Bosselmann, Christian, Kegele, Josua, Hengsbach, Christian, Rau, Sarah, Steinhoff, Bernhard J., Schulze-Bonhage, Andreas, Borggräfe, Ingo, Schankin, Christoph J., Schubert-Bast, Susanne, Schreiber, Herbert, Mayer, Thomas, Korinthenberg, Rudolf, Brockmann, Knut, Wolff, Markus, Dennig, Dieter, Madeleyn, Rene, Kälviäinen, Reetta, Saarela, Anni, Timonen, Oskari, Linnankivi, Tarja, Lehesjoki, Anna-Elina, Rheims, Sylvain, Lesca, Gaetan, Ryvlin, Philippe, Maillard, Louis, Valton, Luc, Derambure, Philippe, Bartolomei, Fabrice, Hirsch, Edouard, Michel, Véronique, Chassoux, Francine, Rees, Mark I., Chung, Seo-Kyung, Pickrell, William O., Powell, Robert H. W., Baker, Mark D., Fonferko-Shadrach, Beata, Lawthom, Charlotte, Anderson, Joe, Schneider, Natascha, Balestrini, Simona, Zagaglia, Sara, Braatz, Vera, Johnson, Michael R., Auce, Pauls, Sills, Graeme J., Baum, Larry W., Sham, Pak C., Cherny, Stacey S., Lui, Colin H. T., Delanty, Norman, Doherty, Colin P., Shukralla, Arif, El-Naggar, Hany, Widdess-Walsh, Peter, Barišić, Nina, Canafoglia, Laura, Franceschetti, Silvana, Castellotti, Barbara, Granata, Tiziana, Ragona, Francesca, Zara, Federico, Iacomino, Michele, Riva, Antonella, Madia, Francesca, Vari, Maria Stella, Salpietro, Vincenzo, Scala, Marcello, Mancardi, Maria Margherita, Lino, Nobili, Amadori, Elisa, Giacomini, Thea, Bisulli, Francesca, Pippucci, Tommaso, Licchetta, Laura, Minardi, Raffaella, Tinuper, Paolo, Muccioli, Lorenzo, Mostacci, Barbara, Gambardella, Antonio, Labate, Angelo, Annesi, Grazia, Manna, Lorella, Gagliardi, Monica, Parrini, Elena, Mei, Davide, Vetro, Annalisa, Bianchini, Claudia, Montomoli, Martino, Doccini, Viola, Barba, Carmen, Hirose, Shinichi, Ishii, Atsushi, Suzuki, Toshimitsu, Inoue, Yushi, Yamakawa, Kazuhiro, Beydoun, Ahmad, Nasreddine, Wassim, Khoueiry-Zgheib, Nathalie, Tumiene, Birute, Utkus, Algirdas, Sadleir, Lynette G., King, Chontelle, Caglayan, S. Hande, Arslan, Mutluay, Yapıcı, Zuhal, Topaloglu, Pınar, Kara, Bulent, Yis, Uluc, Turkdogan, Dilsad, Gundogdu-Eken, Aslı, Bebek, Nerses, Uğur-İşeri, Sibel, Baykan, Betül, Salman, Barış, Haryanyan, Garen, Yücesan, Emrah, Kesim, Yeşim, Özkara, Çiğdem, Tsai, Meng-Han, Ho, Chen-Jui, Lin, Chih-Hsiang, Lin, Kuang-Lin, Chou, I-Jun, Poduri, Annapurna, Shiedley, Beth R., Shain, Catherine, Noebels, Jeffrey L., Goldman, Alicia, Busch, Robyn M., Jehi, Lara, Najm, Imad M., Ferguson, Lisa, Khoury, Jean, Glauser, Tracy A., Clark, Peggy O., Buono, Russell J., Ferraro, Thomas N., Sperling, Michael R., Lo, Warren, Privitera, Michael, French, Jacqueline A., Schachter, Steven, Kuzniecky, Ruben I., Devinsky, Orrin, Hegde, Manu, Greenberg, David A., Ellis, Colin A., Goldberg, Ethan, Helbig, Katherine L., Cosico, Mahgenn, Vaidiswaran, Priya, Fitch, Eryn, Newton, Charles R. J. C., Kariuki, Symon M., Wagner, Ryan G., Owusu-Agyei, Seth, Cole, Andrew J., McGraw, Christopher M., Siena, S. Anthony, Davis, Lea, Hucks, Donald, Faucon, Annika, Wu, David, Abou-Khalil, Bassel W., Haas, Kevin, Taneja, Randip S., null, null |
| Συνεισφορές: | İstanbul University Cerrahpaşa Institutional Repository, Collaborative, Epi25, Newton, CRJ, Montanucci, Ludovica, Lewis-Smith, David, Collins, Ryan L., Niestroj, Lisa-Marie, Parthasarathy, Shridhar, Xian, Julie, Ganesan, Shiva, Macnee, Marie, Brünger, Tobias, Thomas, Rhys H., Lal, Dennis, Epi25 Collaborative, Montanucci L., Collins R. L., Niestroj L., Parthasarathy S., Xian J., Ganesan S., Macnee M., Brünger T., Thomas R. H., Talkowski M., et al., von Spiczak, Sarah, Stephani, Ulrich, Afawi, Zaid, Korczyn, Amos D., Kanaan, Moien, Canavati, Christina, Kurlemann, Gerhard, Müller-Schlüter, Karen, Kluger, Gerhard, Häusler, Martin Georg, Blatt, Ilan, Lemke, Johannes R., Krey, Ilona, Weber, Yvonne, Wolking, Stefan, Becker, Felicitas, Lauxmann, Stephan, Bosselmann, Christian, Kegele, Josua, Hengsbach, Christian, Motelow, Joshua E., Rau, Sarah, Steinhoff, Bernhard J., Schulze-Bonhage, Andreas, Borggräfe, Ingo, Schankin, Christoph J., Schubert-Bast, Susanne, Schreiber, Herbert, Mayer, Thomas, Korinthenberg, Rudolf, Brockmann, Knut, Povysil, Gundula, Wolff, Markus, Dennig, Dieter, Madeleyn, Rene, Kälviäinen, Reetta, Saarela, Anni, Timonen, Oskari, Linnankivi, Tarja, Lehesjoki, Anna-Elina, Rheims, Sylvain, Dhindsa, Ryan S., Lesca, Gaetan, Ryvlin, Philippe, Maillard, Louis, Valton, Luc, Derambure, Philippe, Bartolomei, Fabrice, Hirsch, Edouard, Michel, Véronique, Chassoux, Francine, Rees, Mark I., Stanley, Kate E., Chung, Seo-Kyung, Pickrell, William O., Powell, Robert H. W., Baker, Mark D., Fonferko-Shadrach, Beata, Lawthom, Charlotte, Anderson, Joe, Schneider, Natascha, Balestrini, Simona, Zagaglia, Sara, Allen, Andrew S., Braatz, Vera, Johnson, Michael R., Auce, Pauls, Sills, Graeme J., Kwan, Patrick, Baum, Larry W., Sham, Pak C., Cherny, Stacey S., Lui, Colin H. T., Delanty, Norman, Goldstein, David B., Doherty, Colin P., Shukralla, Arif, El-Naggar, Hany, Widdess-Walsh, Peter, Barišić, Nina, Canafoglia, Laura, Franceschetti, Silvana, Castellotti, Barbara, Granata, Tiziana, Ragona, Francesca, Feng, Yen-Chen Anne, Zara, Federico, Iacomino, Michele, Riva, Antonella, Madia, Francesca, Vari, Maria Stella, Salpietro, Vincenzo, Scala, Marcello, Mancardi, Maria Margherita, Lino, Nobili, Amadori, Elisa, Howrigan, Daniel P., Giacomini, Thea, Bisulli, Francesca, Pippucci, Tommaso, Licchetta, Laura, Minardi, Raffaella, Tinuper, Paolo, Muccioli, Lorenzo, Mostacci, Barbara, Gambardella, Antonio, Labate, Angelo, Abbott, Liam E., Annesi, Grazia, Manna, Lorella, Gagliardi, Monica, Parrini, Elena, Mei, Davide, Vetro, Annalisa, Bianchini, Claudia, Montomoli, Martino, Doccini, Viola, Barba, Carmen, Tashman, Katherine, Hirose, Shinichi, Ishii, Atsushi, Suzuki, Toshimitsu, Inoue, Yushi, Yamakawa, Kazuhiro, Beydoun, Ahmad, Nasreddine, Wassim, Khoueiry-Zgheib, Nathalie, Tumiene, Birute, Utkus, Algirdas, Cerrato, Felecia, Sadleir, Lynette G., King, Chontelle, Caglayan, S. Hande, Arslan, Mutluay, Yapıcı, Zuhal, Topaloglu, Pınar, Kara, Bulent, Yis, Uluc, Turkdogan, Dilsad, Gundogdu-Eken, Aslı, Cusick, Caroline, Bebek, Nerses, Uğur-İşeri, Sibel, Baykan, Betül, Salman, Barış, Haryanyan, Garen, Yücesan, Emrah, Kesim, Yeşim, Özkara, Çiğdem, Tsai, Meng-Han, Ho, Chen-Jui, Singh, Tarjinder, Lin, Chih-Hsiang, Lin, Kuang-Lin, Chou, I.-Jun, Poduri, Annapurna, Shiedley, Beth R., Shain, Catherine, Noebels, Jeffrey L., Goldman, Alicia, Busch, Robyn M., Jehi, Lara, Heyne, Henrike, Najm, Imad M., Ferguson, Lisa, Khoury, Jean, Glauser, Tracy A., Clark, Peggy O., Buono, Russell J., Ferraro, Thomas N., Sperling, Michael R., Dlugos, Dennis J., Byrnes, Andrea E., Lo, Warren, Privitera, Michael, French, Jacqueline A., Schachter, Steven, Kuzniecky, Ruben I., Devinsky, Orrin, Hegde, Manu, Greenberg, David A., Ellis, Colin A., Goldberg, Ethan, Churchhouse, Claire, Helbig, Katherine L., Cosico, Mahgenn, Vaidiswaran, Priya, Fitch, Eryn, Newton, Charles R. J. C., Kariuki, Symon M., Wagner, Ryan G., Owusu-Agyei, Seth, Cole, Andrew J., McGraw, Christopher M., Watts, Nick, Siena, S. Anthony, Davis, Lea, Hucks, Donald, Faucon, Annika, Wu, David, Abou-Khalil, Bassel W., Haas, Kevin, Taneja, Randip S., Solomonson, Matthew, Gupta, Namrata, Neale, Benjamin M., Berkovic, Samuel F., Lerche, Holger, Lowenstein, Daniel H., Cavalleri, Gianpiero L., Cossette, Patrick, Cotsapas, Chris, De Jonghe, Peter, Dixon-Salazar, Tracy, Guerrini, Renzo, Hakonarson, Hakon, Heinzen, Erin L., Helbig, Ingo, Marson, Anthony G., Petrovski, Slavé, Kamalakaran, Sitharthan, Sisodiya, Sanjay M., Stewart, Randy, Weckhuysen, Sarah, Depondt, Chantal, Scheffer, Ingrid E., Striano, Pasquale, Freyer, Catharine, Krause, Roland, May, Patrick, McKenna, Kevin, Regan, Brigid M., Bennett, Caitlin A., Leech, Stephanie L., Leu, Costin, O'Brien, Terence J., Todaro, Marian, Stamberger, Hannah, Depondti, Chantal, Andrade, Danielle M., Ali, Quratulain Zulfiqar, Sadoway, Tara R., Krestel, Heinz, Schaller, André, Papacostas, Savvas S., Kousiappa, Ioanna, Tanteles, George A., Yiolanda, Christou, Štěrbová, Katalin, Vlčková, Markéta, Sedláčková, Lucie, Laššuthová, Petra, Klein, Karl Martin, Rosenow, Felix, Reif, Philipp S., Knake, Susanne, Neubauer, Bernd A., Zimprich, Friedrich, Feucht, Martha, Reinthaler, Eva, Kunz, Wolfram S., Zsurka, Gábor, Surges, Rainer, Baumgartner, Tobias H., von Wrede, Randi, Pendziwiat, Manuela, Muhle, Hiltrud, Rademacher, Annika, van Baalen, Andreas |
| Πηγή: | Nat Commun Nature Communications, Vol 14, Iss 1, Pp 1-19 (2023) Nature communications Montanucci, Ludovica; Lewis-Smith, David; Collins, Ryan L; Niestroj, Lisa-Marie; Parthasarathy, Shridhar; Xian, Julie; Ganesan, Shiva; Macnee, Marie; Brünger, Tobias; Thomas, Rhys H; Talkowski, Michael; Helbig, Ingo; Leu, Costin; Lal, Dennis (2023). Genome-wide identification and phenotypic characterization of seizure-associated copy number variations in 741,075 individuals. Nature Communications, 14(1), p. 4392. Springer Nature 10.1038/s41467-023-39539-6 <http://dx.doi.org/10.1038/s41467-023-39539-6> Nature communications., Berlin : Nature Portfolio, 2023, vol. 14, iss. 1, art. no. 4392, p. [1-19]. Nature Communications, vol 14, iss 1 Nature Communications 14, 4392 (2023). doi:10.1038/s41467-023-39539-6 |
| Στοιχεία εκδότη: | Springer Science and Business Media LLC, 2023. |
| Έτος έκδοσης: | 2023 |
| Θεματικοί όροι: | Temel Bilimler (SCI), DNA Copy Number Variations* Epilepsy* / genetics Genome-Wide Association Study Humans Phenotype Seizures, General Physics and Astronomy, Astronomi ve Astrofizik, Genel Biyokimya, Genetik ve Moleküler Biyoloji, Kimya, 16p13.11 Predispose, CHEMISTRY, BİYOKİMYA VE MOLEKÜLER BİYOLOJİ, Medical Specialties, Medicine and Health Sciences, GWAS, ASTRONOMY & ASTROPHYSICS, SPACE SCIENCE, Temel Bilimler, Physics, Variants, Life Sciences, Chromosomal Microarray, Structural Variation, 3. Good health, MOLECULAR BIOLOGY & GENETICS, Chemistry, Phenotype, Neurology, Natural Sciences (SCI), Physical Sciences, Position Paper, Natural Sciences, Generalized Epilepsy, BIOCHEMISTRY & MOLECULAR BIOLOGY, Engineering sciences. Technology, Sitogenetik, Risk, DNA Copy Number Variations, Uzay bilimi, Science, Life Sciences (LIFE), Molecular Biology and Genetics, 610 Medicine & health, Fizik, General Biochemistry, Genetics and Molecular Biology, Article, Seizures, ASTRONOMİ VE ASTROFİZİK, Spectrum, Yaşam Bilimleri, 15q13.3 Microdeletions, Humans, Cytogenetic, copy number variants, seizure, genome wide, Ilae Commission, Moleküler Biyoloji ve Genetik, Epilepsy, Astronomy and Astrophysics, General Chemistry, Genel Fizik ve Astronomi, Genel Kimya, Fizik Bilimleri, Yaşam Bilimleri (LIFE), Human medicine, Genome-Wide Association Study |
| Περιγραφή: | Copy number variants (CNV) are established risk factors for neurodevelopmental disorders with seizures or epilepsy. With the hypothesis that seizure disorders share genetic risk factors, we pooled CNV data from 10,590 individuals with seizure disorders, 16,109 individuals with clinically validated epilepsy, and 492,324 population controls and identified 25 genome-wide significant loci, 22 of which are novel for seizure disorders, such as deletions at 1p36.33, 1q44, 2p21-p16.3, 3q29, 8p23.3-p23.2, 9p24.3, 10q26.3, 15q11.2, 15q12-q13.1, 16p12.2, 17q21.31, duplications at 2q13, 9q34.3, 16p13.3, 17q12, 19p13.3, 20q13.33, and reciprocal CNVs at 16p11.2, and 22q11.21. Using genetic data from additional 248,751 individuals with 23 neuropsychiatric phenotypes, we explored the pleiotropy of these 25 loci. Finally, in a subset of individuals with epilepsy and detailed clinical data available, we performed phenome-wide association analyses between individual CNVs and clinical annotations categorized through the Human Phenotype Ontology (HPO). For six CNVs, we identified 19 significant associations with specific HPO terms and generated, for all CNVs, phenotype signatures across 17 clinical categories relevant for epileptologists. This is the most comprehensive investigation of CNVs in epilepsy and related seizure disorders, with potential implications for clinical practice. |
| Τύπος εγγράφου: | Article Other literature type |
| Περιγραφή αρχείου: | application/pdf; application/zip; pdf |
| Γλώσσα: | English |
| ISSN: | 2041-1723 |
| DOI: | 10.1038/s41467-023-39539-6 |
| DOI: | 10.48350/189664 |
| DOI: | 10.15496/publikation-96304 |
| Σύνδεσμος πρόσβασης: | https://pubmed.ncbi.nlm.nih.gov/37474567 https://doaj.org/article/5f673f8d63e1481fb289b59e8453a1ee https://avesis.kocaeli.edu.tr/publication/details/9743065a-1608-4d66-80e4-3e86cdd7159a/oai https://hdl.handle.net/20.500.14243/464276 http://hdl.handle.net/10044/1/106513 https://resolver.sub.uni-goettingen.de/purl?gro-2/132957 https://hdl.handle.net/10067/1988590151162165141 https://repository.uantwerpen.be/docstore/d:irua:19306 https://avesis.deu.edu.tr/publication/details/9743065a-1608-4d66-80e4-3e86cdd7159a/oai https://boris.unibe.ch/189664/ https://avesis.marmara.edu.tr/api/publication/9743065a-1608-4d66-80e4-3e86cdd7159a/file https://hdl.handle.net/11424/293162 https://repository.vu.lt/VU:ELABAPDB172752928&prefLang=en_US https://escholarship.org/content/qt1135x3gw/qt1135x3gw.pdf https://escholarship.org/uc/item/1135x3gw https://publications.rwth-aachen.de/record/963745 |
| Rights: | CC BY |
| Αριθμός Καταχώρησης: | edsair.doi.dedup.....bb273220a5b9d8f54aa5bb8960cbc3ae |
| Βάση Δεδομένων: | OpenAIRE |
| ISSN: | 20411723 |
|---|---|
| DOI: | 10.1038/s41467-023-39539-6 |