Academic Journal
Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small‐animal imaging
| Τίτλος: | Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small‐animal imaging |
|---|---|
| Συγγραφείς: | Jelescu, Ileana O., Grussu, Francesco, Ianus, Andrada, Hansen, Brian, Barrett, Rachel L. C., Aggarwal, Manisha, Michielse, Stijn, Nasrallah, Fatima, Syeda, Warda, Wang, Nian, Veraart, Jelle, Roebroeck, Alard, Bagdasarian, Andrew F., Eichner, Cornelius, Sepehrband, Farshid, Zimmermann, Jan, Soustelle, Lucas, Bowman, Christien, Tendler, Benjamin C., Hertanu, Andreea, Jeurissen, Ben, Verhoye, Marleen, Frydman, Lucio, van de Looij, Yohan, Hike, David, Dunn, Jeff F., Miller, Karla, Landman, Bennett A., Shemesh, Noam, Anderson, Adam, McKinnon, Emilie, Farquharson, Shawna, Dell'Acqua, Flavio, Pierpaoli, Carlo, Drobnjak, Ivana, Leemans, Alexander, Harkins, Kevin D., Descoteaux, Maxime, Xu, Duan, Huang, Hao, Santin, Mathieu D., Grant, Samuel C., Obenaus, Andre, Kim, Gene S., Wu, Dan, Le Bihan, Denis, Blackband, Stephen J., Ciobanu, Luisa, Fieremans, Els, Bai, Ruiliang, Leergaard, Trygve B., Zhang, Jiangyang, Dyrby, Tim B., Johnson, G. Allan, Cohen‐Adad, Julien, Budde, Matthew D., Schilling, Kurt G. |
| Συνεισφορές: | Institut Català de la Salut, [Jelescu IO] Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland. CIBM Center for Biomedical Imaging, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland. [Grussu F] Radiomics Group, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. Queen Square MS Centre, Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK. [Ianus A] Champalimaud Research, Champalimaud Foundation, Lisbon, Portugal. School of Biomedical Engineering and Imaging Sciences, King’s College London, London, UK. [Hansen B] Center of Functionally Integrative Neuroscience, Aarhus University, Aarhus, Denmark. [Barrett RLC] Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. NatBrainLab, Department of Forensics and Neurodevelopmental Sciences, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. [Aggarwal M] Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA, Vall d'Hebron Barcelona Hospital Campus, Beeldverwerking ISI, Brain, Cancer |
| Πηγή: | Magn Reson Med Scientia Scientia. Dipòsit d'Informació Digital del Departament de Salut instname Magnetic resonance in medicine, vol. 93, no. 6, pp. 2507-2534 Magnetic resonance in medicine Jelescu, I O, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Acqua, F D, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Bihan, D L, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Schilling, K G 2025, ' Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 1--In vivo small-animal imaging ', Magnetic Resonance in Medicine . Jelescu, I O, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Dell'Acqua, F, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Le Bihan, D, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Schilling, K G 2025, 'Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI : Part 1: In vivo small-animal imaging', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507-2534. https://doi.org/10.1002/mrm.30429 Magnetic Resonance in Medicine |
| Publication Status: | Preprint |
| Στοιχεία εκδότη: | Wiley, 2025. |
| Έτος έκδοσης: | 2025 |
| Θεματικοί όροι: | small animal, q-bio.TO, TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética::imagen de resonancia magnética de difusión, Image Processing, Computer-Assisted/methods, diffusion tensor, microstructure, tractography, FOS: Physical sciences, Review, physics.med-ph, ORGANISMOS::Eukaryota::animales::Chordata::vertebrados::mamíferos::Eutheria::Rodentia::Muridae::Murinae::ratones, diffusion MRI, Mice, 03 medical and health sciences, 0302 clinical medicine, Imatges - Processament, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging::Diffusion Magnetic Resonance Imaging, open science, preclinical, Animals, Diffusion Magnetic Resonance Imaging/methods, Brain/diagnostic imaging, Software, Reproducibility of Results, acquisition, best practices, processing, Journal Article, Image Processing, Computer-Assisted, Tissues and Organs (q-bio.TO), Rates (Animals de laboratori), Computer. Automation, Preclinical and Clinical Imaging, INFORMATION SCIENCE::Information Science::Computing Methodologies::Image Processing, Computer-Assisted, Brain, Quantitative Biology - Tissues and Organs, Physics - Medical Physics, CIENCIA DE LA INFORMACIÓN::Ciencias de la información::metodologías computacionales::procesamiento de imágenes asistido por ordenador, Diffusion Magnetic Resonance Imaging, FOS: Biological sciences, Imatgeria per ressonància magnètica, Human medicine, Medical Physics (physics.med-ph), ORGANISMS::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Eutheria::Rodentia::Muridae::Murinae::Mice |
| Περιγραφή: | Small‐animal diffusion MRI (dMRI) has been used for methodological development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. The steps from animal setup and monitoring, to acquisition, analysis, and interpretation are complex, with many decisions that may ultimately affect what questions can be answered using the resultant data. This work aims to present selected considerations and recommendations from the diffusion community on best practices for preclinical dMRI of in vivo animals. We describe the general considerations and foundational knowledge that must be considered when designing experiments. We briefly describe differences in animal species and disease models and discuss why some may be more or less appropriate for different studies. We, then, give recommendations for in vivo acquisition protocols, including decisions on hardware, animal preparation, and imaging sequences, followed by advice for data processing including preprocessing, model‐fitting, and tractography. Finally, we provide an online resource that lists publicly available preclinical dMRI datasets and software packages to promote responsible and reproducible research. In each section, we attempt to provide guides and recommendations, but also highlight areas for which no guidelines exist (and why), and where future work should focus. Although we mainly cover the central nervous system (on which most preclinical dMRI studies are focused), we also provide, where possible and applicable, recommendations for other organs of interest. An overarching goal is to enhance the rigor and reproducibility of small animal dMRI acquisitions and analyses, and thereby advance biomedical knowledge. |
| Τύπος εγγράφου: | Article Other literature type |
| Περιγραφή αρχείου: | application/pdf |
| Γλώσσα: | English |
| ISSN: | 1522-2594 0740-3194 |
| DOI: | 10.1002/mrm.30429 |
| DOI: | 10.48550/arxiv.2209.12994 |
| Σύνδεσμος πρόσβασης: | https://pubmed.ncbi.nlm.nih.gov/40008568 http://arxiv.org/abs/2209.12994 http://hdl.handle.net/11351/12973 https://dspace.library.uu.nl/handle/1874/461039 https://serval.unil.ch/resource/serval:BIB_7D54D697DFE6.P001/REF.pdf https://serval.unil.ch/notice/serval:BIB_7D54D697DFE6 http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_7D54D697DFE68 https://repository.uantwerpen.be/docstore/d:irua:28141 https://hdl.handle.net/10067/2133370151162165141 https://pure.au.dk/portal/en/publications/336f06f8-b082-4fd9-a2de-760051ac1ff7 |
| Rights: | CC BY CC BY NC ND |
| Αριθμός Καταχώρησης: | edsair.doi.dedup.....8dd91ad8a4c5d7ded4039cf0eea6fbcb |
| Βάση Δεδομένων: | OpenAIRE |
| ISSN: | 15222594 07403194 |
|---|---|
| DOI: | 10.1002/mrm.30429 |