Academic Journal
A Conserved DT2-bZIP66-NF-YC4 Regulatory Module Confers Drought Tolerance in Rice and Arabidopsis.
| Title: | A Conserved DT2-bZIP66-NF-YC4 Regulatory Module Confers Drought Tolerance in Rice and Arabidopsis. |
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| Authors: | Shen J; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.; College of Agronomy, Bio-breeding Laboratory of Anhui Province, Anhui Agricultural University, Hefei, China., Li Y; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Zhang L; College of Agronomy, Bio-breeding Laboratory of Anhui Province, Anhui Agricultural University, Hefei, China., Ma X; Shanghai Agrobiological Gene Center, Shanghai, China., Peng C; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Yuan C; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Wu Y; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Zhao K; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Zhao S; College of Agronomy, Bio-breeding Laboratory of Anhui Province, Anhui Agricultural University, Hefei, China., Guo J; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Li R; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Yan Z; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Ren S; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Han Y; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Lin X; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Li X; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Li M; State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China., Yang P; State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China., Song S; State Key Laboratory of Rice Biology and Breeding, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China. |
| Source: | Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2026 Aug; Vol. 13 (48), pp. e76034. Date of Electronic Publication: 2026 Jun 09. |
| Publication Type: | Journal Article |
| Language: | English |
| Journal Info: | Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844 (Electronic) Linking ISSN: 21983844 NLM ISO Abbreviation: Adv Sci (Weinh) Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Weinheim : WILEY-VCH, [2014]- |
| MeSH Terms: | Oryza*/genetics , Oryza*/physiology , Oryza*/metabolism , Drought Resistance*/genetics , Arabidopsis*/genetics , Arabidopsis*/physiology , Arabidopsis*/metabolism , Plant Proteins*/genetics , Plant Proteins*/metabolism , Basic-Leucine Zipper Transcription Factors*/genetics , Basic-Leucine Zipper Transcription Factors*/metabolism, Gene Expression Regulation, Plant/genetics ; Plants, Genetically Modified/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Stress, Physiological/genetics ; Droughts |
| Abstract: | Drought stress severely restricts plant growth and crop productivity. Although numerous transcription factors have been linked to drought responses, the regulatory networks underlying drought tolerance in rice remain incompletely understood. Here, through a CRISPR/Cas9-based genetic screen of a rice mutant population, we identified a mutant with decreased drought tolerance, osdt2. OsDT2 encodes a CCCH-type zinc-finger protein and its overexpression confers strong drought resistance. We demonstrate that OsDT2 physically interacts with the bZIP transcription factor OsbZIP66, and they synergistically activate drought-responsive genes, such as LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3), to enhance drought tolerance. Furthermore, the nuclear factor Y subunit C4 (OsNF-YC4) interacts with both OsDT2 and OsbZIP66, coordinating their recruitment to the promoter of OsLEA3. Remarkably, the OsDT2 function is conserved across cereals, including wheat and maize, and the tripartite DT2-bZIP66-NF-YC4 module is functionally conserved in mediating drought responses in both rice and Arabidopsis. Collectively, our study reveals a novel, evolutionarily conserved transcriptional regulatory module that fine-tunes drought-responsive gene expression and provides potential targets for engineering drought-resilient crops. (© 2026 The Author(s). Advanced Science published by Wiley‐VCH GmbH.) |
| References: | A. Gupta, A. Rico‐Medina, and A. I. Caño‐Delgado, “The Physiology of Plant Responses to Drought,” Science 368 (2020): 266–269, https://doi.org/10.1126/science.aaz7614. H. Hu and L. Xiong, “Genetic Engineering and Breeding of Drought‐Resistant Crops,” Annual Review of Plant Biology 65 (2014): 715–741, https://doi.org/10.1146/annurev‐arplant‐050213‐040000. H. Zhang, J. Zhu, Z. Gong, and J.‐K. Zhu, “Abiotic Stress Responses in Plants,” Nature Reviews Genetics 23 (2022): 104–119, https://doi.org/10.1038/s41576‐021‐00413‐0. Y. Chen, J. Shen, L. Zhang, et al., “Nuclear Translocation of OsMFT1 That Is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice,” Molecular Plant 14 (2021): 1297–1311, https://doi.org/10.1016/j.molp.2021.05.001. R. Joshi, S. H. Wani, B. Singh, et al., “Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions,” Frontiers in Plant Science 7 (2016): 1029. H. Jung, P. J. Chung, S. H. Park, et al., “Overexpression of OsERF48 Causes Regulation of OsCML16, a Calmodulin‐Like Protein Gene That Enhances Root Growth And Drought Tolerance,” Plant Biotechnology Journal 15 (2017): 1295–1308, https://doi.org/10.1111/pbi.12716. K. Yamaguchi‐Shinozaki and K. Shinozaki, “Transcriptional Regulatory Networks in Cellular Responses and Tolerance to Dehydration and Cold Stresses,” Annual Review of Plant Biology 57 (2006): 781–803, https://doi.org/10.1146/annurev.arplant.57.032905.105444. D. Wang, Y. H. Guo, C. G. Wu, G. D. Yang, Y. Y. Li, and C. C. Zheng, “Genome‐wide Analysis of CCCH Zinc Finger family in Arabidopsis and Rice,” BMC Genomics 9 (2008): 44, https://doi.org/10.1186/1471‐2164‐9‐44. J. P. Cui, G. Jander, L. R. Racki, P. D. Kim, N. E. Pierce, and F. M. Ausubel, “Signals Involved in Arabidopsis Resistance to Trichoplusia ni Caterpillars Induced by Virulent and Avirulent Strains of the Phytopathogen Pseudomonas Syringae,” Plant Physiology 129 (2002): 551–564, https://doi.org/10.1104/pp.010815. W.‐C. Kim, J.‐Y. Kim, J.‐H. Ko, H. Kang, J. Kim, and K.‐H. Han, “AtC3H14, a Plant‐Specific Tandem CCCH Zinc‐Finger Protein, Binds to its Target mRNAs in a Sequence‐Specific Manner And Affects Cell Elongation in Arabidopsis Thaliana,” Plant Journal 80 (2014): 772–784, https://doi.org/10.1111/tpj.12667. A. Mukhopadhyay, S. Vij, and A. K. Tyagi, “Overexpression of a Zinc‐finger Protein Gene From Rice Confers Tolerance to Cold, Dehydration, and Salt Stress in Transgenic Tobacco,” Proceedings of the National Academy of Sciences 101 (2004): 6309–6314, https://doi.org/10.1073/pnas.0401572101. C. Y. Wu, C. J. You, C. S. Li, et al., “RID1, Encoding a Cys2/His2‐type Zinc Finger Transcription Factor, Acts as a Master Switch From Vegetative to Floral Development in Rice,” Proceedings of the National Academy of Sciences 105 (2008), 12915–12920. Y. Yang, C. Ma, Y. Xu, et al., “A Zinc Finger Protein Regulates Flowering Time and Abiotic Stress Tolerance in Chrysanthemum by Modulating Gibberellin Biosynthesis,” The Plant Cell 26 (2014): 2038–2054, https://doi.org/10.1105/tpc.114.124867. H. Zhang, L. Ni, Y. Liu, et al., “The C2H2 ‐type Zinc Finger Protein ZFP182 is Involved in Abscisic Acid‐Induced Antioxidant Defense in Rice F,” Journal of Integrative Plant Biology 54 (2012): 500–510, https://doi.org/10.1111/j.1744‐7909.2012.01135.x. S.‐J. Lee, H. J. Jung, H. Kang, and S. Y. Kim, “Arabidopsis Zinc Finger Proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 Are Involved in ABA and JA Responses,” Plant and Cell Physiology 53 (2012): 673–686, https://doi.org/10.1093/pcp/pcs023. P.‐C. Lin, M. C. Pomeranz, Y. Jikumaru, et al., “The Arabidopsis Tandem Zinc Finger Protein AtTZF1 Affects ABA‐ and GA‐Mediated Growth, Stress And Gene Expression Responses,” Plant Journal 65 (2011): 253–268, https://doi.org/10.1111/j.1365‐313X.2010.04419.x. C. Guo, L. Chen, Y. Cui, et al., “RNA Binding Protein OsTZF7 Traffics between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice,” Frontiers in Plant Science 13 (2022): 802337, https://doi.org/10.3389/fpls.2022.802337. A. Jan, K. Maruyama, D. Todaka, et al., “OsTZF1, a CCCH‐Tandem Zinc Finger Protein, Confers Delayed Senescence and Stress Tolerance in Rice by Regulating Stress‐Related Genes,” Plant Physiology 161 (2013): 1202–1216, https://doi.org/10.1104/pp.112.205385. M. G. Selvaraj, A. Jan, T. Ishizaki, et al., “Expression of the CCCH‐tandem Zinc Finger Protein Gene OsTZF5 Under a Stress‐Inducible Promoter Mitigates The Effect Of Drought Stress On Rice Grain Yield Under Field Conditions,” Plant Biotechnology Journal 18 (2020): 1711–1721, https://doi.org/10.1111/pbi.13334. S. Y. Seong, J. S. Shim, S. W. Bang, and J. K. Kim, “Overexpression of OsC3H10, a CCCH‐Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress‐Related Genes,” Plants 9 (2020): 1298, https://doi.org/10.3390/plants9101298. W. Wang, B. Liu, M. Xu, M. Jamil, and G. Wang, “ABA‐induced CCCH Tandem Zinc Finger Protein OsC3H47 Decreases ABA Sensitivity and Promotes Drought Tolerance in Oryza sativa,” Biochemical and Biophysical Research Communications 464 (2015): 33–37, https://doi.org/10.1016/j.bbrc.2015.05.087. S. Sahid, C. Roy, D. Shee, R. Shee, R. Datta, and S. Paul, “C3H, NAC94, and bHLH148 Transcription Factors Regulate Cultivar‐specific Drought Response by Modulating r40C1 Gene Expression in Rice,” Environmental and Experimental Botany 214 (2023): 105480. M. Jakoby, B. Weisshaar, W. Dröge‐Laser, et al., “bZIP Transcription Factors in Arabidopsis,” Trends in Plant Science 7 (2002): 106–111, https://doi.org/10.1016/S1360‐1385(01)02223‐3. N. K. Rolly, Q. M. Imran, M. Shahid, et al., “Drought‐induced AtbZIP62 Transcription Factor Regulates Drought Stress Response in Arabidopsis,” Plant Physiology and Biochemistry 156 (2020): 384–395, https://doi.org/10.1016/j.plaphy.2020.09.013. T. Yoshida, Y. Fujita, H. Sayama, et al., “AREB1, AREB2, and ABF3 Are Master Transcription Factors That Cooperatively Regulate ABRE‐dependent ABA Signaling Involved in Drought Stress Tolerance and Require ABA for Full Activation,” Plant Journal 61 (2010): 672–685, https://doi.org/10.1111/j.1365‐313X.2009.04092.x. L. Zhong, D. Chen, D. Min, et al., “AtTGA4, a bZIP Transcription Factor, Confers Drought Resistance by Enhancing Nitrate Transport and Assimilation in Arabidopsis thaliana,” Biochemical and Biophysical Research Communications 457 (2015): 433–439, https://doi.org/10.1016/j.bbrc.2015.01.009. A. Nijhawan, M. Jain, A. K. Tyagi, and J. P. Khurana, “Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice,” Plant Physiology 146 (2008): 323–324, https://doi.org/10.1104/pp.107.112821. C. Liu, B. Mao, S. Ou, et al., “OsbZIP71, a bZIP Transcription Factor, Confers Salinity and Drought Tolerance in Rice,” Plant Molecular Biology 84 (2014): 19–36, https://doi.org/10.1007/s11103‐013‐0115‐3. G. Lu, C. Gao, X. Zheng, B. Han, et al., “Identification of OsbZIP72 as a Positive Regulator of ABA Response and Drought Tolerance in Rice,” Planta 229 (2009): 605–615, https://doi.org/10.1007/s00425‐008‐0857‐3. N. Tang, H. Zhang, X. Li, J. Xiao, and L. Xiong, “Constitutive Activation of Transcription Factor OsbZIP46 Improves Drought Tolerance in Rice,” Plant Physiology 158 (2012): 1755–1768, https://doi.org/10.1104/pp.111.190389. Y. Xiang, N. Tang, H. Du, H. Ye, and L. Xiong, “Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice,” Plant Physiology 148 (2008): 1938–1952, https://doi.org/10.1104/pp.108.128199. S. Yoon, D.‐K. Lee, I. J. Yu, Y. S. Kim, Y. D. Choi, and J.‐K. Kim, “Overexpression of the OsbZIP66 Transcription Factor Enhances Drought Tolerance of Rice Plants,” Plant Biotechnology Reports 11 (2017): 53–62, https://doi.org/10.1007/s11816‐017‐0430‐2. W. Zong, J. Yang, J. Fu, and L. Xiong, “Synergistic Regulation of Drought‐Responsive Genes by Transcription Factor OsbZIP23 and Histone Modification In Rice,” Journal of Integrative Plant Biology 62 (2020): 723–729, https://doi.org/10.1111/jipb.12850. Z. A. Myers, R. W. Kumimoto, C. L. Siriwardana, et al., “NUCLEAR FACTOR Y, Subunit C (NF‐YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana,” PLOS Genetics 12 (2016): 1006333, https://doi.org/10.1371/journal.pgen.1006333. C. Zhang, Q. Qian, X. Huang, W. Zhang, X. Liu, and X. Hou, “NF‐YCs Modulate Histone Variant H2A.Z Deposition to Regulate Photomorphogenic Growth in Arabidopsis,” Journal of Integrative Plant Biology 63 (2021a): 1120–1132. M. Nardini, N. Gnesutta, G. Donati, et al., “Sequence‐specific Transcription Factor NF‐Y Displays Histone‐Like DNA Binding and H2B‐Like Ubiquitination,” Cell 152 (2013): 132–143, https://doi.org/10.1016/j.cell.2012.11.047. X. Liu, P. Hu, M. Huang, et al., “The NF‐YC–RGL2 Module Integrates GA and ABA Signalling to Regulate Seed Germination in Arabidopsis,” Nature Communications 7 (2016): 12768, https://doi.org/10.1038/ncomms12768. W. Zhang, Y. Tang, Y. Hu, et al., “Arabidopsis NF‐YCs Play Dual Roles in Repressing Brassinosteroid Biosynthesis and Signaling During Light‐regulated Hypocotyl Elongation,” Plant Cell 33 (2021b): 2360–2374. X. Huang, Z. Ma, D. He, et al., “Molecular Condensation of the CO/NF‐YB/NF‐YC/FT Complex Gates Floral Transition in Arabidopsis,” EMBO Journal 44 (2025): 225–250, https://doi.org/10.1038/s44318‐024‐00293‐0. W. Li, K. Yang, C. Hu, et al., “A Natural Gene On‐off System Confers Field Thermotolerance for Grain Quality and Yield in Rice,” Cell 188 (2025): 4170–4172, https://doi.org/10.1016/j.cell.2025.06.041. T.‐F. Yu, Y. Liu, J.‐D. Fu, et al., “The NF‐Y‐PYR Module Integrates The Abscisic Acid Signal Pathway To Regulate Plant Stress Tolerance,” Plant Biotechnology Journal 19 (2021): 2589–2605, https://doi.org/10.1111/pbi.13684. L. Yang, Y. Chen, L. Xu, et al., “The OsFTIP6‐OsHB22‐OsMYBR57 Module Regulates Drought Response in Rice,” Molecular Plant 15 (2022): 1227–1242, https://doi.org/10.1016/j.molp.2022.06.003. B. Xiao, Y. Huang, N. Tang, and L. Xiong, “Over‐expression of a LEA Gene in Rice Improves Drought Resistance Under the Field Conditions,” Theoretical and Applied Genetics 115 (2007): 35–46, https://doi.org/10.1007/s00122‐007‐0538‐9. K. Xie, Y. Ren, Y. Huang, et al., “A Conserved Nuclear Factor YC Subunit, NF‐YC3, is Essential for Arbuscule Development,” Plant Journal 121 (2025): 17195. C. Zhang, M. Jian, W. Li, et al., “Gibberellin signaling modulates flowering via the DELLA–BRAHMA–NF‐YC module in Arabidopsis,” Plant Cell 35 (2023): 3470–3484, https://doi.org/10.1093/plcell/koad166. J. Y. Kang, H. I. Choi, M. Y. Im, and S. Y. Kim, “Arabidopsis Basic Leucine Zipper Proteins That Mediate Stress‐responsive Abscisic Acid Signaling,” Plant Cell 14 (2002): 343–357, https://doi.org/10.1105/tpc.010362. X. Hou, J. Zhou, C. Liu, L. Liu, L. Shen, and H. Yu, “Nuclear Factor Y‐mediated H3K27me3 Demethylation of the SOC1 Locus Orchestrates Flowering Responses of Arabidopsis,” Nature Communications 5 (2014): 4601, https://doi.org/10.1038/ncomms5601. Z. A. Myers and B. F. Holt, 3rd, “NUCLEAR FACTOR‐Y: Still Complex After all these Years?,” Current Opinion in Plant Biology 45 (2018): 96–102, https://doi.org/10.1016/j.pbi.2018.05.015. A. Testa, G. Donati, P. Yan, et al., “Chromatin Immunoprecipitation (ChIP) on Chip Experiments Uncover a Widespread Distribution of NF‐Y Binding CCAAT Sites outside of Core Promoters,” Journal of Biological Chemistry 280 (2005): 13606–13615, https://doi.org/10.1074/jbc.M414039200. H. Zhao, D. Wu, F. Kong, K. Lin, H. Zhang, and G. Li, “The Arabidopsis thaliana Nuclear Factor Y Transcription Factors,” Frontiers in Plant Science 7 (2017): 2045. S. Toki, N. Hara, K. Ono, et al., “Early Infection of Scutellum Tissue With Agrobacterium Allows High‐Speed Transformation of Rice,” Plant Journal 47 (2006): 969–976, https://doi.org/10.1111/j.1365‐313X.2006.02836.x. R. Bart, M. Chern, C.‐J. Park, L. Bartley, and P. C. Ronald, “A Novel System for Gene Silencing Using siRNAs in Rice Leaf and Stem‐derived Protoplasts,” Plant Methods 2 (2006): 13, https://doi.org/10.1186/1746‐4811‐2‐13. |
| Grant Information: | 32441049 National Natural Science Foundation of China; 32322009 National Natural Science Foundation of China; LRG25C130001 Natural Science Foundation of Zhejiang Province; 2025SWYZ0100 Bio-breeding Laboratory of Anhui Province; Zhejiang Key Laboratory of Crop Germplasm Innovation and Utilization Open Fund |
| Contributed Indexing: | Keywords: DT2‐bZIP66‐NF‐YC4; OsDT2; drought tolerance; rice and Arabidopsis |
| Substance Nomenclature: | 0 (Plant Proteins) 0 (Transcription Factors) 0 (Basic-Leucine Zipper Transcription Factors) |
| Entry Date(s): | Date Created: 20260609 Date Completed: 20260828 Latest Revision: 20260828 |
| Update Code: | 20260828 |
| PubMed Central ID: | PMC13337034 |
| DOI: | 10.1002/advs.76034 |
| PMID: | 42261789 |
| Database: | MEDLINE |
| ISSN: | 2198-3844 |
|---|---|
| DOI: | 10.1002/advs.76034 |