Harmonized Protocol for Subfield Segmentation in the Hippocampal Body on High-Resolution In Vivo MRI From the Hippocampal Subfields Group (HSG).

Bibliographic Details
Title: Harmonized Protocol for Subfield Segmentation in the Hippocampal Body on High-Resolution In Vivo MRI From the Hippocampal Subfields Group (HSG).
Authors: Daugherty AM; Wayne State University, Detroit, Michigan, USA., Carr V; San Jose State University, San Jose, California, USA., Canada KL; University of Massachusetts Amherst, Amherst, Massachusetts, USA., Rådman G; Lund University, Lund, Sweden., Brown T; Georgia Institute of Technology, Atlanta, Georgia, USA., Augustinack J; Massachusetts General Hospital, Harvard, Massachusetts, USA., Amunts K; Research Centre Jülich, Institute of Neurosciences and Medicine (INM-1), Jülich, Germany.; C. & O. Vogt Institute for Brain Research, University Hospital Düsseldorf, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany., Bakker A; Johns Hopkins University, Baltimore, Maryland, USA., Berron D; German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany., Burggren A; University of Oregon, Eugene, Oregon, USA., Chetelat G; Normandie Univ, UNICAEN, INSERM, U1237, PhIND, Neuropresage Team, Caen, France., de Flores R; Normandie Univ, UNICAEN, INSERM, U1237, PhIND, Neuropresage Team, Caen, France., Ding SL; Allen Institute for Brain Science, Seatle, Washington, USA., Huang Y; University of Alberta, Edmonton, Alberta, Canada., Johnson E; University of California Davis, Davis, California, USA., Kanel P; University of Michigan, Ann Arbor, Michigan, USA., Keresztes A; Brain Imaging Centre, HUN-REN Research Centre for Natural Sciences, and Institute of Psychology, ELTE Eötvös Loránd University, Budapest, Hungary., Kedo O; Research Centre Jülich, Institute of Neurosciences and Medicine (INM-1), Jülich, Germany., Kennedy KM; Center for Vital Longevity, School of Behavioral and Brain Sciences, The University of Texas at Dallas, Dallas, Texas, USA., Lee J; University of California Davis, Davis, California, USA., Malykhin N; University of Alberta, Edmonton, Alberta, Canada., Martinez A; San Jose State University, San Jose, California, USA., Mueller S; University of California San Francisco, San Francisco, California, USA., Mulligan E; University of Illinois at Chicago, Chicago, Illinois, USA., Ofen N; Center for Vital Longevity, School of Behavioral and Brain Sciences, The University of Texas at Dallas, Dallas, Texas, USA., Palombo D; The University of British Columbia, Vancouver, British Columbia, Canada., Pasquini L; University of California San Francisco, San Francisco, California, USA., Pluta J; University of Pennsylvania, Philadelphia, Pennsylvania, USA., Raz N; Stony Brook University, Stony Brook, New York, USA.; Max Planck Institute for Human Development, Berlin, Germany., Riggins T; University of Maryland, College Park, Maryland, USA., Rodrigue KM; Center for Vital Longevity, School of Behavioral and Brain Sciences, The University of Texas at Dallas, Dallas, Texas, USA., Saifullah S; Wayne State University, Detroit, Michigan, USA., Schlichting ML; University of Toronto, Toronto, Ontario, Canada., Stark C; University of California Irvine, Irvine, California, USA., Wang L; University of Toronto, Toronto, Ontario, Canada.; Baycrest Academy for Research and Education, Rotman Research Institute, Toronto, Ontario, Canada., Yushkevich P; Department of Radiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA., La Joie R; Memory and Aging Center, UCSF Weill Institute for Neurosciences, Department of Neurology, University of California, San Francisco, California, USA., Wisse L; Lund University, Lund, Sweden., Olsen R; University of Toronto, Toronto, Ontario, Canada.; Baycrest Academy for Research and Education, Rotman Research Institute, Toronto, Ontario, Canada.
Corporate Authors: Alzheimer’s Disease Neuroimaging Initiative, Hippocampal Subfields Group
Source: Hippocampus [Hippocampus] 2026 Mar; Vol. 36 (2), pp. e70073.
Publication Type: Journal Article
Language: English
Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 9108167 Publication Model: Print Cited Medium: Internet ISSN: 1098-1063 (Electronic) Linking ISSN: 10509631 NLM ISO Abbreviation: Hippocampus Subsets: MEDLINE
Imprint Name(s): Publication: New York, NY : Wiley
Original Publication: New York, NY : Churchill Livingstone, c1991-
MeSH Terms: Magnetic Resonance Imaging*/methods , Hippocampus*/anatomy & histology , Hippocampus*/diagnostic imaging , Image Processing, Computer-Assisted*/methods, Humans ; Female ; Male ; Adult ; Middle Aged
Abstract: Hippocampal subfields differentially develop and age, and they vary in vulnerability to neurodegenerative diseases. Innovation in high-resolution imaging has accelerated clinical research on human hippocampal subfields, but substantial differences in segmentation protocols impede comparisons of results across laboratories. The Hippocampal Subfields Group (HSG) is an international organization seeking to address this issue by developing a histologically valid, reliable, and freely available segmentation protocol for high-resolution T2-weighted 3 T MRI (http://www.hippocampalsubfields.com). Here, we report the first portion of the protocol focused on subfields in the hippocampal body; protocols for the head and tail are in development. The body protocol includes definitions of the internal boundaries between subiculum, Cornu Ammonis (CA) 1-3 subfields, and dentate gyrus, in addition to the external boundaries of the hippocampus apart from surrounding white matter and cerebrospinal fluid. The segmentation protocol is based on a novel histological reference dataset labeled by multiple expert neuroanatomists. With broad participation of the research community, we voted on the segmentation protocol via an online survey, which included detailed protocol information, feasibility testing, demonstration videos, example segmentations, and labeled histology. All boundary definitions were rated as having high clarity and reached consensus agreement by Delphi procedure. The harmonized body protocol yielded high inter- and intra-rater reliability. In the present paper we report the procedures to develop and test the protocol, as well as the detailed procedures for manual segmentation using the harmonized protocol. The harmonized protocol will significantly facilitate cross-study comparisons and provide increased insight into the structure and function of hippocampal subfields across the lifespan and in neurodegenerative diseases.
(© 2026 The Author(s). Hippocampus published by Wiley Periodicals LLC.)
Comments: Update of: bioRxiv. 2025 May 04:2025.04.29.651039. doi: 10.1101/2025.04.29.651039.. (PMID: 40654693)
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Grant Information: R01 AG072056 United States AG NIA NIH HHS; R01-HD079518 United States NH NIH HHS; RF1-AG056014 United States NH NIH HHS; R01-AG072056 United States NH NIH HHS; Transition Therapeutics; Cogstate; Fondation Vaincre Alzheimer; R01-AG011230 United States NH NIH HHS; F32-HD108960 United States NH NIH HHS; EuroImmun; Biogen; InterLabs-0015 Helmholz Association's Initiative and Networking Fund; Johnson & Johnson Pharmaceutical Research & Development LLC.; P30-AG072931 United States NH NIH HHS; Alzheimer's Drug Discovery Foundation; Servier; Lumosity; Bristol-Myers Squibb Company; U01 AG024904 United States AG NIA NIH HHS; R01-AG069474 United States NH NIH HHS; Piramal Imaging; R00 AG065457 United States AG NIA NIH HHS; Takeda Pharmaceutical Company; R01-AG073250 United States NH NIH HHS; Meso Scale Diagnostics LLC.; RF1 AG072056 United States AG NIA NIH HHS; R01 AG070592 United States AG NIA NIH HHS; R01 AG011230 United States AG NIA NIH HHS; F32 HD108960 United States HD NICHD NIH HHS; U01 AG024904 United States NH NIH HHS; 667696 European Union's Horizon Europe Programme; Araclon Biotech; P30 AG066519 United States AG NIA NIH HHS; Merck & Co. Inc.; RF1 AG056014 United States AG NIA NIH HHS; R01-AG070592 United States NH NIH HHS; Joint Lab Supercomputing and Modeling for the Human Brain; Novartis Pharmaceuticals Corporation; R01 AG056014 United States AG NIA NIH HHS; P30-AG066519 United States NH NIH HHS; GE Healthcare; R01-MH107512 United States NH NIH HHS; R01 HD079518 United States HD NICHD NIH HHS; Fondation Alzheimer; Elan Pharmaceuticals Inc.; Fondation pour la Recherche Médicale; R37 AG011230 United States AG NIA NIH HHS; AbbVie, Alzheimer's Association; R01 AG069474 United States AG NIA NIH HHS; United States EB NIBIB NIH HHS; K99 AG065457 United States AG NIA NIH HHS; Janssen Alzheimer Immunotherapy Research & Development LLC.; Agence Nationale de la Recherche; Pfizer Inc.; 101147319 European Union's Horizon Europe Programme; F. Hoffmann-La Roche Ltd.; RF1 AG069474 United States AG NIA NIH HHS; Eli Lilly and Company; PJT-162292 Canada CAPMC CIHR; Foundation for the National Institutes of Health; CereSpir Inc.; IXICO Ltd.; K99/R00-AG065457 United States NH NIH HHS; P30 AG072931 United States AG NIA NIH HHS; Department of Defense; NeuroRx Research; BioClinica Inc.; R01 MH107512 United States MH NIMH NIH HHS; MultiPark-A Strategic Research Area at Lund University; Neurotrack Technologies; Fujirebio; Lundbeck; Genentech Inc.; Eisai Inc.; Fondation Recherche Alzheimer; R01 AG073250 United States AG NIA NIH HHS
Contributed Indexing: Keywords: Cornu Ammonis; dentate gyrus; neuroimaging; subiculum
Entry Date(s): Date Created: 20260204 Date Completed: 20260706 Latest Revision: 20260706
Update Code: 20260707
PubMed Central ID: PMC12869135
DOI: 10.1002/hipo.70073
PMID: 41635209
Database: MEDLINE
Description
ISSN:1098-1063
DOI:10.1002/hipo.70073