Academic Journal
Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
| Τίτλος: | Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea. |
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| Συγγραφείς: | Prokchorchik M; Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea., Pandey A; Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea., Moon H; Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea., Kim W; Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.; Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea., Jeon H; Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.; Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea., Jung G; Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea., Jayaraman J; The New Zealand Institute for Plant and Food Research, Auckland, New Zealand., Poole S; Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA., Segonzac C; Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.; Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.; Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea., Sohn KH; Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.; School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea., McCann HC; New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.; Max Planck Institute for Developmental Biology, Tübingen, Germany. |
| Πηγή: | Microbial genomics [Microb Genom] 2020 Nov; Vol. 6 (11). |
| Τύπος έκδοσης: | Journal Article; Research Support, Non-U.S. Gov't |
| Γλώσσα: | English |
| Στοιχεία περιοδικού: | Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE |
| Imprint Name(s): | Publication: Oct. 2015- : [London] : Microbiology Society Original Publication: [London] : Society for General Microbiology, [2015]- |
| Ιατρικοί όροι (MeSH): | Capsicum/*microbiology , Host Adaptation/*genetics , Solanum lycopersicum/*microbiology , Ralstonia/*genetics , Ralstonia solanacearum/*genetics, Disease Resistance/genetics ; Genetic Variation/genetics ; Genome, Bacterial/genetics ; Plant Diseases/microbiology ; Ralstonia/isolation & purification ; Ralstonia solanacearum/isolation & purification ; Virulence/genetics ; Phylogeny ; Republic of Korea |
| Περίληψη: | Bacterial wilt caused by the Ralstonia solanacearum species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (R. pseudosolanacearum) strains isolated from pepper (Capsicum annuum) and tomato (Solanum lycopersicum) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in Ralstonia evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats. |
| References: | FEMS Microbiol Ecol. 2008 Oct;66(1):14-24. (PMID: 18662313) Plant Pathol J. 2020 Feb;36(1):43-53. (PMID: 32089660) Mol Plant Pathol. 2019 Sep;20(9):1237-1251. (PMID: 31218811) Mol Biol Evol. 2013 May;30(5):1224-8. (PMID: 23408797) ISME J. 2016 Sep;10(9):2317-30. (PMID: 26943626) ISME J. 2012 May;6(5):961-74. (PMID: 22094345) Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8296-301. (PMID: 27335458) Org Lett. 2017 Aug 18;19(16):4175-4178. (PMID: 28753290) Curr Opin Plant Biol. 2014 Aug;20:110-7. (PMID: 24880553) J Comput Biol. 2012 May;19(5):455-77. (PMID: 22506599) BMC Genomics. 2015 Apr 08;16:270. (PMID: 25888333) Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32-6. (PMID: 16381877) Plant Commun. 2020 Jan 21;1(4):100025. (PMID: 33367244) Science. 2008 Jun 20;320(5883):1632-5. (PMID: 18566285) Microbiol Immunol. 1992;36(12):1251-75. (PMID: 1283774) Nucleic Acids Res. 2012 Jan;40(Database issue):D621-6. (PMID: 22009673) Bioinformatics. 2010 Mar 1;26(5):589-95. (PMID: 20080505) Front Plant Sci. 2019 Apr 05;10:418. (PMID: 31024592) PLoS Genet. 2019 Apr 15;15(4):e1008114. (PMID: 30986243) Mol Biol Evol. 2016 Jun;33(6):1635-8. (PMID: 26921390) PLoS One. 2015 May 22;10(5):e0128036. (PMID: 26000737) PLoS Genet. 2012;8(8):e1002877. (PMID: 22912595) PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. (PMID: 28594827) Mol Plant Microbe Interact. 2012 Jul;25(7):941-53. (PMID: 22414437) Bioinformatics. 2011 Nov 1;27(21):2987-93. (PMID: 21903627) Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21. (PMID: 27141966) J Bacteriol. 1990 Sep;172(9):4836-43. (PMID: 2203731) PLoS One. 2008;3(11):e3647. (PMID: 18985154) Nat Methods. 2012 Mar 04;9(4):357-9. (PMID: 22388286) BMC Genomics. 2013 Dec 06;14:859. (PMID: 24314259) BMC Genomics. 2016 Feb 01;17:90. (PMID: 26830494) Microbiol Immunol. 1995;39(11):897-904. (PMID: 8657018) Phytopathology. 2015 May;105(5):597-607. (PMID: 25710204) Mol Plant Microbe Interact. 2009 May;22(5):538-50. (PMID: 19348572) Bioinformatics. 2006 Nov 1;22(21):2688-90. (PMID: 16928733) Annu Rev Phytopathol. 2012;50:67-89. (PMID: 22559068) PLoS Comput Biol. 2015 Feb 12;11(2):e1004041. (PMID: 25675341) PLoS One. 2014 Nov 19;9(11):e112963. (PMID: 25409509) Nature. 2006 Nov 16;444(7117):323-9. (PMID: 17108957) Nat Rev Microbiol. 2020 Aug;18(8):415-427. (PMID: 32346148) Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11341-6. (PMID: 26305955) Trends Microbiol. 2018 Nov;26(11):929-942. (PMID: 29941188) Bioinformatics. 2010 Mar 15;26(6):841-2. (PMID: 20110278) Nat Genet. 2014 Mar;46(3):305-309. (PMID: 24509479) Genome Biol. 2015 Aug 06;16:157. (PMID: 26243257) Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063) Microbiol Mol Biol Rev. 2017 Aug 9;81(3):. (PMID: 28794225) J Mol Biol. 2015 Nov 20;427(23):3754-65. (PMID: 26388411) |
| Contributed Indexing: | Keywords: Ralstonia solanacearum; microbial competition; pathogen evolution; plant–microbe interactions; population genomics |
| SCR Organism: | Ralstonia pseudosolanacearum |
| Entry Date(s): | Date Created: 20201105 Date Completed: 20210816 Latest Revision: 20240804 |
| Update Code: | 20260130 |
| PubMed Central ID: | PMC7725338 |
| DOI: | 10.1099/mgen.0.000461 |
| PMID: | 33151139 |
| Βάση Δεδομένων: | MEDLINE |
| ISSN: | 2057-5858 |
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| DOI: | 10.1099/mgen.0.000461 |