Λεπτομέρειες βιβλιογραφικής εγγραφής
| Τίτλος: |
phpMs: A PHP-Based Mass Spectrometry Utilities Library. |
| Συγγραφείς: |
Collins A; Department of Functional and Comparative Genomics, Institute of Integrated Biology, University of Liverpool , Liverpool, L69 7ZB, United Kingdom., Jones AR; Department of Functional and Comparative Genomics, Institute of Integrated Biology, University of Liverpool , Liverpool, L69 7ZB, United Kingdom. |
| Πηγή: |
Journal of proteome research [J Proteome Res] 2018 Mar 02; Vol. 17 (3), pp. 1309-1313. Date of Electronic Publication: 2018 Feb 13. |
| Τύπος έκδοσης: |
Journal Article; Research Support, Non-U.S. Gov't |
| Γλώσσα: |
English |
| Στοιχεία περιοδικού: |
Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE |
| Imprint Name(s): |
Original Publication: Washington, D.C. : American Chemical Society, c2002- |
| Ιατρικοί όροι (MeSH): |
Software*, Information Dissemination/*methods , Libraries, Special/*statistics & numerical data , Mass Spectrometry/*statistics & numerical data , Small Molecule Libraries/*supply & distribution, Information Storage and Retrieval/statistics & numerical data ; Mass Spectrometry/methods ; Proteomics/methods ; Proteomics/statistics & numerical data ; Databases, Protein ; Humans ; Internet |
| Περίληψη: |
The recent establishment of cloud computing, high-throughput networking, and more versatile web standards and browsers has led to a renewed interest in web-based applications. While traditionally big data has been the domain of optimized desktop and server applications, it is now possible to store vast amounts of data and perform the necessary calculations offsite in cloud storage and computing providers, with the results visualized in a high-quality cross-platform interface via a web browser. There are number of emerging platforms for cloud-based mass spectrometry data analysis; however, there is limited pre-existing code accessible to web developers, especially for those that are constrained to a shared hosting environment where Java and C applications are often forbidden from use by the hosting provider. To remedy this, we provide an open-source mass spectrometry library for one of the most commonly used web development languages, PHP. Our new library, phpMs, provides objects for storing and manipulating spectra and identification data as well as utilities for file reading, file writing, calculations, peptide fragmentation, and protein digestion as well as a software interface for controlling search engines. We provide a working demonstration of some of the capabilities at http://pgb.liv.ac.uk/phpMs . |
| Grant Information: |
BB/L005239/1 United Kingdom Biotechnology and Biological Sciences Research Council |
| Contributed Indexing: |
Keywords: PHP; bioinformatics; library; mass spectrometry; phpMs; proteomics; software |
| Substance Nomenclature: |
0 (Small Molecule Libraries) |
| Entry Date(s): |
Date Created: 20180206 Date Completed: 20180917 Latest Revision: 20181202 |
| Update Code: |
20260130 |
| DOI: |
10.1021/acs.jproteome.7b00783 |
| PMID: |
29400473 |
| Βάση Δεδομένων: |
MEDLINE |