Academic Journal
Προβολή σε EDS

Microcomputer programs for prediction and comparative evaluation of protein secondary structure from nucleotide sequence data: application to ribulose-1,5-bisphosphate carboxylase sequences.

Λεπτομέρειες βιβλιογραφικής εγγραφής
Τίτλος: Microcomputer programs for prediction and comparative evaluation of protein secondary structure from nucleotide sequence data: application to ribulose-1,5-bisphosphate carboxylase sequences.
Συγγραφείς: Pongor S, Guttieri MJ, Cohen LM, Szalay AA
Πηγή: DNA (Mary Ann Liebert, Inc.) [DNA] 1985 Aug; Vol. 4 (4), pp. 319-26.
Τύπος έκδοσης: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Γλώσσα: English
Στοιχεία περιοδικού: Publisher: Mary Ann Liebert Country of Publication: United States NLM ID: 8302432 Publication Model: Print Cited Medium: Print ISSN: 0198-0238 (Print) Linking ISSN: 01980238 NLM ISO Abbreviation: DNA Subsets: MEDLINE
Imprint Name(s): Publication: New York Ny : Mary Ann Liebert
Original Publication: New York : M.A. Liebert, [c1981]-c1989.
Ιατρικοί όροι (MeSH): Computers* , Ribulose-Bisphosphate Carboxylase*, Base Sequence ; Epitopes ; Genes ; Hydrogen Bonding ; Protein Conformation ; Solubility
Περίληψη: Apple II PASCAL computer programs are described for routine evaluation of protein secondary structures predicted from DNA or amino acid sequence data. The programs predict protein secondary structure using the directional information algorithm of Garnier et al. (1978), and calculate hydrophobicity (Kyte and Doolittle, 1982), hydrophilicity (Hopp and Woods, 1981), hydrophobic moment (Eisenberg et al., 1984b), and secondary structure propensity profiles. The novel feature of these programs is the application of numeric and graphic methods, designed to facilitate detection and characterization of structural similarities/divergences using the aforementioned structural parameters. The use of the programs is demonstrated on a set of sequences from the large and small subunits of ribulose-1,5-bisphosphate carboxylase.
Substance Nomenclature: 0 (Epitopes)
EC 4.1.1.39 (Ribulose-Bisphosphate Carboxylase)
Entry Date(s): Date Created: 19850801 Date Completed: 19851121 Latest Revision: 20061115
Update Code: 20260130
DOI: 10.1089/dna.1985.4.319
PMID: 2412771
Βάση Δεδομένων: MEDLINE
FullText Text:
  Availability: 0
Header DbId: cmedm
DbLabel: MEDLINE
An: 2412771
AccessLevel: 3
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: Microcomputer programs for prediction and comparative evaluation of protein secondary structure from nucleotide sequence data: application to ribulose-1,5-bisphosphate carboxylase sequences.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Pongor+S%22">Pongor S</searchLink><br /><searchLink fieldCode="AU" term="%22Guttieri+MJ%22">Guttieri MJ</searchLink><br /><searchLink fieldCode="AU" term="%22Cohen+LM%22">Cohen LM</searchLink><br /><searchLink fieldCode="AU" term="%22Szalay+AA%22">Szalay AA</searchLink>
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%228302432%22">DNA (Mary Ann Liebert, Inc.)</searchLink> [DNA] 1985 Aug; Vol. 4 (4), pp. 319-26.
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
– Name: Language
  Label: Language
  Group: Lang
  Data: English
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Mary+Ann+Liebert%22">Mary Ann Liebert </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>8302432 <i>Publication Model: </i>Print <i>Cited Medium: </i>Print <i>ISSN: </i>0198-0238 (Print) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2201980238%22">01980238 </searchLink><i>NLM ISO Abbreviation: </i>DNA <i>Subsets: </i>MEDLINE
– Name: PublisherInfo
  Label: Imprint Name(s)
  Group: PubInfo
  Data: <i>Publication</i>: New York Ny : Mary Ann Liebert<br /><i>Original Publication</i>: New York : M.A. Liebert, [c1981]-c1989.
– Name: SubjectMESH
  Label: MeSH Terms
  Group: Su
  Data: <searchLink fieldCode="MM" term="%22Computers%22">Computers*</searchLink> <br /><searchLink fieldCode="MM" term="%22Ribulose-Bisphosphate+Carboxylase%22">Ribulose-Bisphosphate Carboxylase*</searchLink><br /><searchLink fieldCode="MH" term="%22Base+Sequence%22">Base Sequence</searchLink> ; <searchLink fieldCode="MH" term="%22Epitopes%22">Epitopes</searchLink> ; <searchLink fieldCode="MH" term="%22Genes%22">Genes</searchLink> ; <searchLink fieldCode="MH" term="%22Hydrogen+Bonding%22">Hydrogen Bonding</searchLink> ; <searchLink fieldCode="MH" term="%22Protein+Conformation%22">Protein Conformation</searchLink> ; <searchLink fieldCode="MH" term="%22Solubility%22">Solubility</searchLink>
– Name: Abstract
  Label: Abstract
  Group: Ab
  Data: Apple II PASCAL computer programs are described for routine evaluation of protein secondary structures predicted from DNA or amino acid sequence data. The programs predict protein secondary structure using the directional information algorithm of Garnier et al. (1978), and calculate hydrophobicity (Kyte and Doolittle, 1982), hydrophilicity (Hopp and Woods, 1981), hydrophobic moment (Eisenberg et al., 1984b), and secondary structure propensity profiles. The novel feature of these programs is the application of numeric and graphic methods, designed to facilitate detection and characterization of structural similarities/divergences using the aforementioned structural parameters. The use of the programs is demonstrated on a set of sequences from the large and small subunits of ribulose-1,5-bisphosphate carboxylase.
– Name: NumberCAS
  Label: Substance Nomenclature
  Group: ID
  Data: 0 (Epitopes)<br />EC 4.1.1.39 (Ribulose-Bisphosphate Carboxylase)
– Name: DateEntry
  Label: Entry Date(s)
  Group: Date
  Data: <i>Date Created: </i>19850801 <i>Date Completed: </i>19851121 <i>Latest Revision: </i>20061115
– Name: DateUpdate
  Label: Update Code
  Group: Date
  Data: 20260130
– Name: DOI
  Label: DOI
  Group: ID
  Data: 10.1089/dna.1985.4.319
– Name: AN
  Label: PMID
  Group: ID
  Data: 2412771
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=cmedm&AN=2412771
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1089/dna.1985.4.319
    Languages:
      – Code: eng
        Text: English
    PhysicalDescription:
      Pagination:
        StartPage: 319
    Subjects:
      – SubjectFull: Base Sequence
        Type: general
      – SubjectFull: Epitopes
        Type: general
      – SubjectFull: Genes
        Type: general
      – SubjectFull: Hydrogen Bonding
        Type: general
      – SubjectFull: Protein Conformation
        Type: general
      – SubjectFull: Solubility
        Type: general
      – SubjectFull: Computers
        Type: general
      – SubjectFull: Ribulose-Bisphosphate Carboxylase
        Type: general
    Titles:
      – TitleFull: Microcomputer programs for prediction and comparative evaluation of protein secondary structure from nucleotide sequence data: application to ribulose-1,5-bisphosphate carboxylase sequences.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Pongor S
      – PersonEntity:
          Name:
            NameFull: Guttieri MJ
      – PersonEntity:
          Name:
            NameFull: Cohen LM
      – PersonEntity:
          Name:
            NameFull: Szalay AA
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 01
              M: 08
              Text: 1985 Aug
              Type: published
              Y: 1985
          Identifiers:
            – Type: issn-print
              Value: 0198-0238
          Numbering:
            – Type: volume
              Value: 4
            – Type: issue
              Value: 4
          Titles:
            – TitleFull: DNA (Mary Ann Liebert, Inc.)
              Type: main
ResultId 1