Bibliographic Details
| Title: |
NanoPack: visualizing and processing long-read sequencing data. |
| Authors: |
Coster, Wouter De1 wouter.decoster@molgen.vib-ua.be, D’Hert, Svenn2, Schultz, Darrin T3, Cruts, Marc1, Broeckhoven, Christine Van1 |
| Source: |
Bioinformatics. Aug2018, Vol. 34 Issue 15, p2666-2669. 4p. |
| Subject Terms: |
*Nucleotide sequence, *Computer software, *Graphical user interfaces, *Electronic data processing, *Python programming language, *Data visualization |
| Abstract: |
Summary Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Availability and implementation The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack , together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. Supplementary information Supplementary data are available at Bioinformatics online. [ABSTRACT FROM AUTHOR] |
| Database: |
Academic Search Index |