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Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)

Λεπτομέρειες βιβλιογραφικής εγγραφής
Τίτλος: Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)
Συγγραφείς: Hamarsheh, Omar, Karakuş, Mehmet, Azmi, Kifaya, Jaouadi, Kaouther, Yaghoobi-Ershadi, Mohammad Reza, Krüger, Andreas, Amro, Ahmad, Kenawy, Mohamed, Dokhan, Mostafa, Abdeen, Ziad, Mcdowell, Mary
Συνεισφορές: Al-Quds University, Department of Biological Sciences Notre Dame, University of Notre Dame Indiana (UND), Ege university, Laboratoire de Transmission, Contrôle et Immunobiologie des Infections - Laboratory of Transmission, Control and Immunobiology of Infection (LR11IPT02), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Tehran University of Medical Sciences (TUMS), Bernhard Nocht Institute for Tropical Medicine - Bernhard-Nocht-Institut für Tropenmedizin Hamburg, Germany (BNITM), Université Ain Shams, University of Sabratha, This work was supported by a grant from the Eck Institute for Global Health at the University of Notre Dame and travel grants awarded to Omar Hamarsheh from Fulbright Association and Zamallah Academic Development Programme.
Πηγή: ISSN: 1756-3305.
Στοιχεία εκδότη: HAL CCSD
BioMed Central
Έτος έκδοσης: 2018
Συλλογή: Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe)
Θεματικοί όροι: Leishmania major, Population structure, Phlebotomus papatasi, Microsatellites, MESH: Africa, Northern, MESH: Alleles, MESH: Middle East, MESH: Phlebotomus/classification, MESH: Phlebotomus/genetics, MESH: Phlebotomus/growth & development, MESH: Animal Distribution, MESH: Animals, MESH: Expressed Sequence Tags, MESH: Genetic Variation, MESH: Genotype, MESH: Heterozygote, MESH: Insect Vectors/classification, MESH: Insect Vectors/genetics, MESH: Insect Vectors/growth & development, MESH: Microsatellite Repeats, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology
Περιγραφή: International audience ; BACKGROUND: Phlebotomus papatasi is a widely distributed sand fly species in different tropical and sub-tropical regions including the Middle East and North Africa. It is considered an important vector that transmits Leishmania major parasites, the causative agents of cutaneous leishmaniasis. The development of microsatellite markers for this sand fly vector is of high interest to understand its population structure and to monitor its geographic dispersal.RESULTS: Fourteen polymorphic microsatellite markers were developed with simple di-, tri- and tetra-nucleotide repeats. The F statistics calculated for the 14 markers revealed high genetic diversity; expected heterozygosity (He) ranged from 0.407 to 0.767, while observed heterozygosity (Ho) was lower and ranged from 0.083 to 0.514. The number of alleles sampled fall in the range of 9-29. Three out of 14 markers deviated from Hardy-Weinberg expectations, no significant linkage disequilibrium was detected and high values for inbreeding coefficient (FIS) were likely due to inbreeding.CONCLUSIONS: The development of these functional microsatellites enable a high resolution of P. papatasi populations. It opens a path for researchers to perform multi locus-based population genetic structure analyses, and comparative mapping, a part of the efforts to uncover the population dynamics of this vector, which is an important global strategy for understanding the epidemiology and control of leishmaniasis.
Τύπος εγγράφου: article in journal/newspaper
Γλώσσα: English
Relation: info:eu-repo/semantics/altIdentifier/pmid/29523212; pasteur-01731436; https://hal-riip.archives-ouvertes.fr/pasteur-01731436; https://hal-riip.archives-ouvertes.fr/pasteur-01731436/document; https://hal-riip.archives-ouvertes.fr/pasteur-01731436/file/Development%20of%20polymorphic.pdf; PUBMED: 29523212; PUBMEDCENTRAL: PMC5845265
DOI: 10.1186/s13071-018-2770-3
Διαθεσιμότητα: https://hal-riip.archives-ouvertes.fr/pasteur-01731436
https://hal-riip.archives-ouvertes.fr/pasteur-01731436/document
https://hal-riip.archives-ouvertes.fr/pasteur-01731436/file/Development%20of%20polymorphic.pdf
https://doi.org/10.1186/s13071-018-2770-3
Rights: http://creativecommons.org/licenses/by/ ; info:eu-repo/semantics/OpenAccess
Αριθμός Καταχώρησης: edsbas.CEC85520
Βάση Δεδομένων: BASE
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  Availability: 0
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  – Url: https://hal-riip.archives-ouvertes.fr/pasteur-01731436#
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  Data: Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)
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  Data: <searchLink fieldCode="AR" term="%22Hamarsheh%2C+Omar%22">Hamarsheh, Omar</searchLink><br /><searchLink fieldCode="AR" term="%22Karakuş%2C+Mehmet%22">Karakuş, Mehmet</searchLink><br /><searchLink fieldCode="AR" term="%22Azmi%2C+Kifaya%22">Azmi, Kifaya</searchLink><br /><searchLink fieldCode="AR" term="%22Jaouadi%2C+Kaouther%22">Jaouadi, Kaouther</searchLink><br /><searchLink fieldCode="AR" term="%22Yaghoobi-Ershadi%2C+Mohammad+Reza%22">Yaghoobi-Ershadi, Mohammad Reza</searchLink><br /><searchLink fieldCode="AR" term="%22Krüger%2C+Andreas%22">Krüger, Andreas</searchLink><br /><searchLink fieldCode="AR" term="%22Amro%2C+Ahmad%22">Amro, Ahmad</searchLink><br /><searchLink fieldCode="AR" term="%22Kenawy%2C+Mohamed%22">Kenawy, Mohamed</searchLink><br /><searchLink fieldCode="AR" term="%22Dokhan%2C+Mostafa%22">Dokhan, Mostafa</searchLink><br /><searchLink fieldCode="AR" term="%22Abdeen%2C+Ziad%22">Abdeen, Ziad</searchLink><br /><searchLink fieldCode="AR" term="%22Mcdowell%2C+Mary%22">Mcdowell, Mary</searchLink>
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  Data: Al-Quds University<br />Department of Biological Sciences Notre Dame<br />University of Notre Dame Indiana (UND)<br />Ege university<br />Laboratoire de Transmission, Contrôle et Immunobiologie des Infections - Laboratory of Transmission, Control and Immunobiology of Infection (LR11IPT02)<br />Institut Pasteur de Tunis<br />Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)<br />Tehran University of Medical Sciences (TUMS)<br />Bernhard Nocht Institute for Tropical Medicine - Bernhard-Nocht-Institut für Tropenmedizin Hamburg, Germany (BNITM)<br />Université Ain Shams<br />University of Sabratha<br />This work was supported by a grant from the Eck Institute for Global Health at the University of Notre Dame and travel grants awarded to Omar Hamarsheh from Fulbright Association and Zamallah Academic Development Programme.
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  Data: <i>ISSN: 1756-3305</i>.
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  Data: 2018
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  Data: <searchLink fieldCode="DE" term="%22Leishmania+major%22">Leishmania major</searchLink><br /><searchLink fieldCode="DE" term="%22Population+structure%22">Population structure</searchLink><br /><searchLink fieldCode="DE" term="%22Phlebotomus+papatasi%22">Phlebotomus papatasi</searchLink><br /><searchLink fieldCode="DE" term="%22Microsatellites%22">Microsatellites</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Africa%22">MESH: Africa</searchLink><br /><searchLink fieldCode="DE" term="%22Northern%22">Northern</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Alleles%22">MESH: Alleles</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Middle+East%22">MESH: Middle East</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Phlebotomus%2Fclassification%22">MESH: Phlebotomus/classification</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Phlebotomus%2Fgenetics%22">MESH: Phlebotomus/genetics</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Phlebotomus%2Fgrowth+%26+development%22">MESH: Phlebotomus/growth & development</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Animal+Distribution%22">MESH: Animal Distribution</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Animals%22">MESH: Animals</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Expressed+Sequence+Tags%22">MESH: Expressed Sequence Tags</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Genetic+Variation%22">MESH: Genetic Variation</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Genotype%22">MESH: Genotype</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Heterozygote%22">MESH: Heterozygote</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Insect+Vectors%2Fclassification%22">MESH: Insect Vectors/classification</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Insect+Vectors%2Fgenetics%22">MESH: Insect Vectors/genetics</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Insect+Vectors%2Fgrowth+%26+development%22">MESH: Insect Vectors/growth & development</searchLink><br /><searchLink fieldCode="DE" term="%22MESH%3A+Microsatellite+Repeats%22">MESH: Microsatellite Repeats</searchLink><br /><searchLink fieldCode="DE" term="%22[SDV%2EMP]Life+Sciences+[q-bio]%2FMicrobiology+and+Parasitology%22">[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology</searchLink>
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  Data: International audience ; BACKGROUND: Phlebotomus papatasi is a widely distributed sand fly species in different tropical and sub-tropical regions including the Middle East and North Africa. It is considered an important vector that transmits Leishmania major parasites, the causative agents of cutaneous leishmaniasis. The development of microsatellite markers for this sand fly vector is of high interest to understand its population structure and to monitor its geographic dispersal.RESULTS: Fourteen polymorphic microsatellite markers were developed with simple di-, tri- and tetra-nucleotide repeats. The F statistics calculated for the 14 markers revealed high genetic diversity; expected heterozygosity (He) ranged from 0.407 to 0.767, while observed heterozygosity (Ho) was lower and ranged from 0.083 to 0.514. The number of alleles sampled fall in the range of 9-29. Three out of 14 markers deviated from Hardy-Weinberg expectations, no significant linkage disequilibrium was detected and high values for inbreeding coefficient (FIS) were likely due to inbreeding.CONCLUSIONS: The development of these functional microsatellites enable a high resolution of P. papatasi populations. It opens a path for researchers to perform multi locus-based population genetic structure analyses, and comparative mapping, a part of the efforts to uncover the population dynamics of this vector, which is an important global strategy for understanding the epidemiology and control of leishmaniasis.
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  Data: info:eu-repo/semantics/altIdentifier/pmid/29523212; pasteur-01731436; https://hal-riip.archives-ouvertes.fr/pasteur-01731436; https://hal-riip.archives-ouvertes.fr/pasteur-01731436/document; https://hal-riip.archives-ouvertes.fr/pasteur-01731436/file/Development%20of%20polymorphic.pdf; PUBMED: 29523212; PUBMEDCENTRAL: PMC5845265
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  Data: 10.1186/s13071-018-2770-3
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  Data: https://hal-riip.archives-ouvertes.fr/pasteur-01731436<br />https://hal-riip.archives-ouvertes.fr/pasteur-01731436/document<br />https://hal-riip.archives-ouvertes.fr/pasteur-01731436/file/Development%20of%20polymorphic.pdf<br />https://doi.org/10.1186/s13071-018-2770-3
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        Value: 10.1186/s13071-018-2770-3
    Languages:
      – Text: English
    Subjects:
      – SubjectFull: Leishmania major
        Type: general
      – SubjectFull: Population structure
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      – SubjectFull: Phlebotomus papatasi
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      – TitleFull: Development of polymorphic EST microsatellite markers for the sand fly, Phlebotomus papatasi (Diptera: Psychodidae)
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