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Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021

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Title: Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021
Authors: Smallman-Raynor, MR, Cliff, AD, Robson, SC, Connor, TR, Loman, NJ, Golubchik, T, Martinez Nunez, RT, Bonsall, D, Rambaut, A, Snell, LB, Livett, R, Ludden, C, Corden, S, Nastouli, E, Nebbia, G, Johnston, I, Lythgoe, K, Torok, ME, Goodfellow, IG, Prieto, JA, Saeed, K, Jackson, DK, Houlihan, C, Frampton, D, Hamilton, WL, Witney, AA, Bucca, G, Pope, CF, Moore, C, Thomson, EC, Harrison, EM, Smith, CP, Rogan, F, Beckwith, SM, Murray, A, Singleton, D, Eastick, K, Sheridan, LA, Randell, PA, Jackson, LM, Ariani, CV, Gonçalves, S, Fairley, DJ, Loose, MW, Watkins, J, Moses, S, Nicholls, S, Bull, M, Amato, R, Smith, DL, Aanensen, DM, Barrett, JC, Aggarwal, D, Shepherd, JG, Curran, MD, Parmar, S, Parker, MD, Williams, C, Glaysher, S, Underwood, AP, Bashton, M, Pacchiarini, N, Loveson, KF, Byott, M, Carabelli, AM, Templeton, KE, de Silva, TI, Wang, D, Langford, CF, Sillitoe, J, Gunson, RN, Cottrell, S, O'Grady, J, Kwiatkowski, D, Lillie, PJ, Cortes, N, Moore, N, Thomas, C, Burns, PJ, Mahungu, TW, Liggett, S, Beckett, AH, Holden, MTG, Levett, LJ, Osman, H, Hassan-Ibrahim, MO, Simpson, DA, Chand, M, Gupta, RK, Darby, AC, Paterson, S, Pybus, OG, Volz, EM, de Angelis, D, Robertson, DL, Page, AJ, Martincorena, I, Aigrain, L, Bassett, AR, Wong, N, Taha, Y, Erkiert, MJ, Spencer Chapman, MH, Dewar, R, McHugh, MP, Mookerjee, S, Aplin, S, Harvey, M, Sass, T, Umpleby, H, Wheeler, H, McKenna, JP, Warne, B, Taylor, JF, Chaudhry, Y, Izuagbe, R, Jahun, AS, Young, GR, McMurray, CL, McCann, CM, Nelson, A, Elliott, S, Lowe, H, Price, A, Crown, MR, Rey, S, Roy, S, Temperton, B, Shaaban, S, Hesketh, AR, Laing, KG, Monahan, IM, Heaney, J, Pelosi, E, Silviera, S, Wilson-Davies, E, Fryer, H, Adams, H, du Plessis, L, Johnson, R, Harvey, WT, Hughes, J, Orton, RJ, Spurgin, LG, Bourgeois, Y, Ruis, C, O'Toole, Á, Gourtovaia, M, Sanderson, T, Fraser, C, Edgeworth, J, Breuer, J, Michell, SL, Todd, JA, John, M, Buck, D, Gajee, K, Kay, GL, Peacock, SJ, Heyburn, D, Kitchman, K, McNally, A, Pritchard, DT, Dervisevic, S, Muir, P, Robinson, E, Vipond, BB, Ramadan, NA, Jeanes, C, Weldon, D, Catalan, J, Jones, N, da Silva Filipe, A, Fuchs, M, Miskelly, J, Jeffries, AR, Oliver, K, Park, NR, Ash, A, Koshy, C, Barrow, M, Buchan, SL, Mantzouratou, A, Clark, G, Holmes, CW, Campbell, S, Davis, T, Tan, NK, Brown, JR, Harris, KA, Kidd, SP, Grant, PR, Xu-McCrae, L, Cox, A, Madona, P, Pond, M, Withell, KT, Graham, C, Denton-Smith, R, Swindells, E, Turnbull, R, Sloan, TJ, Bosworth, A, Hutchings, S, Pymont, HM, Casey, A, Ratcliffe, L, Jones, CR, Knight, BA, Haque, T, Hart, J, Irish-Tavares, D, Witele, E, Mower, C, Watson, LK, Collins, J, Eltringham, G, Crudgington, D, Macklin, B, Iturriza-Gomara, M, Lucaci, AO, McClure, PC, Carlile, M, Holmes, N, Storey, N, Rooke, S, Yebra, G, Craine, N, Perry, M, Alikhan, N - F, Bridgett, S, Cook, KF, Fearn, C, Goudarzi, S, Lyons, RA, Williams, T, Haldenby, ST, Durham, J, Leonard, S, Davies, RM, Batra, R, Blane, B, Spyer, MJ, Smith, P, Yavus, M, Williams, RJ, Mahanama, AIK, Samaraweera, B, Girgis, ST, Hansford, SE, Green, A, Beaver, C, Bellis, KL, Dorman, MJ, Kay, S, Prestwood, L, Rajatileka, S, Quick, J, Poplawski, R, Reynolds, N, Mack, A, Morriss, A, Whalley, T, Patel, B, Georgana, I, Hosmillo, M, Pinckert, ML, Stockton, J, Henderson, JH, Hollis, A, Stanley, W, Yew, WC, Myers, R, Thornton, A, Adams, A, Annett, T, Asad, H, Birchley, A, Coombes, J, Evans, JM, Fina, L, Gatica-Wilcox, B, Gilbert, L, Graham, L, Hey, J, Hilvers, E, Jones, S, Jones, H, Kumziene-Summerhayes, S, McKerr, C, Powell, J, Pugh, G, Taylor, S, Trotter, AJ, Williams, CA, Kermack, LM, Foulkes, BH, Gallis, M, Hornsby, HR, Louka, SF, Pohare, M, Wolverson, P, Zhang, P, MacIntyre-Cockett, G, Trebes, A, Moll, RJ, Ferguson, L, Goldstein, EJ, Maclean, A, Tomb, R, Starinskij, I, Thomson, L, Southgate, J, Kraemer, MUG, Raghwani, J, Zarebski, AE, Boyd, O, Geidelberg, L, Illingworth, CJ, Jackson, C, Pascall, D, Vattipally, S, Freeman, TM, Hsu, SN, Lindsey, BB, James, K, Lewis, K, Tonkin-Hill, G, Tovar-Corona, JM, Cox, M, Abudahab, K, Menegazzo, M, Taylor, BEW, Yeats, CA, Mukaddas, A, Wright, DW, de Oliveira Martins, L, Colquhoun, R, Hill, V, Jackson, B, McCrone, JT, Medd, N, Scher, E, Keatley, J - P, Curran, T, Morgan, S, Maxwell, P, Smith, K, Eldirdiri, S, Kenyon, A, Holmes, AH, Price, JR, Wyatt, T, Mather, AE, Skvortsov, T, Hartley, JA, Guest, M, Kitchen, C, Merrick, I, Munn, R, Bertolusso, B, Lynch, J, Vernet, G, Kirk, S, Wastnedge, E, Stanley, R, Idle, G, Bradley, DT, Poyner, J, Mori, M, Jones, O, Wright, V, Brooks, E, Churcher, CM, Fragakis, M, Galai, K, Jermy, A, Judges, S, McManus, GM, Smith, KS, Westwick, E, Attwood, SW, Bolt, F, Davies, A, De Lacy, E, Downing, F, Edwards, S, Meadows, L, Jeremiah, S, Smith, N, Foulser, L, Charalampous, T, Patel, A, Berry, L, Boswell, T, Fleming, VM, Howson-Wells, HC, Joseph, A, Khakh, M, Lister, MM, Bird, PW, Fallon, K, Helmer, T, Odedra, M, Shaw, J, Tang, JW, Willford, NJ, Blakey, V, Raviprakash, V, Sheriff, N, Williams, L - A, Feltwell, T, Bedford, L, Cargill, JS, Hughes, W, Moore, J, Stonehouse, S, Atkinson, L, Lee, JCD, Shah, D, Alcolea-Medina, A, Ohemeng-Kumi, N, Ramble, J, Sehmi, J, Williams, R, Chatterton, W, Pusok, M, Everson, W, Castigador, A, Macnaughton, E, El Bouzidi, K, Lampejo, T, Sudhanva, M, Breen, C, Sluga, G, Ahmad, SSY, George, RP, Machin, NW, Binns, D, James, V, Blacow, R, Coupland, L, Smith, L, Barton, E, Padgett, D, Scott, G, Cross, A, Mirfenderesky, M, Greenaway, J, Cole, K, Clarke, P, Duckworth, N, Walsh, S, Bicknell, K, Impey, R, Wyllie, S, Hopes, R, Bishop, C, Chalker, V, Harrison, I, Gifford, L, Molnar, Z, Auckland, C, Evans, C, Johnson, K, Partridge, DG, Raza, M, Baker, P, Bonner, S, Essex, S, Murray, LJ, Lawton, AI, Burton-Fanning, S, Payne, BAI, Waugh, S, Gomes, AN, Kimuli, M, Murray, DR, Ashfield, P, Dobie, D, Ashford, F, Best, A, Crawford, L, Cumley, N, Mayhew, M, Megram, O, Mirza, J, Moles-Garcia, E, Percival, B, Driscoll, M, Ensell, L, Lowe, HL, Maftei, L, Mondani, M, Chaloner, NJ, Cogger, BJ, Easton, LJ, Huckson, H, Lewis, J, Lowdon, S, Malone, CS, Munemo, F, Mutingwende, M, Nicodemi, R, Podplomyk, O, Somassa, T, Beggs, A, Richter, A, Cormie, C, Dias, J, Forrest, S, Higginson, EE, Maes, M, Young, J, Davidson, RK, Jackson, KA, Turtle, L, Keeley, AJ, Ball, J, Byaruhanga, T, Chappell, JG, Dey, J, Hill, JD, Park, EJ, Fanaie, A, Hilson, RA, Yaze, G, Lo, S, Afifi, S, Beer, R, Maksimovic, J, McCluggage, K, Spellman, K, Bresner, C, Fuller, W, Marchbank, A, Workman, T, Shelest, E, Debebe, J, Sang, F, Zamudio, ME, Francois, S, Gutierrez, B, Vasylyeva, TI, Flaviani, F, Ragonnet-Cronin, M, Smollett, KL, Broos, A, Mair, D, Nichols, J, Nomikou, K, Tong, L, Tsatsani, I, O'Brien, S, Rushton, S, Sanderson, R, Perkins, J, Cotton, S, Gallagher, A, Allara, E, Pearson, C, Bibby, D, Dabrera, G, Ellaby, N, Gallagher, E, Hubb, J, Lackenby, A, Lee, D, Manesis, N, Mbisa, T, Platt, S, Twohig, KA, Morgan, M, Aydin, A, Baker, DJ, Foster-Nyarko, E, Prosolek, SJ, Rudder, S, Baxter, C, Carvalho, SF, Lavin, D, Mariappan, A, Radulescu, C, Singh, A, Tang, M, Morcrette, H, Bayzid, N, Cotic, M, Balcazar, CE, Gallagher, MD, Maloney, D, Stanton, TD, Williamson, KA, Manley, R, Michelsen, ML, Sambles, CM, Studholme, DJ, Warwick-Dugdale, J, Eccles, R, Gemmell, M, Gregory, R, Hughes, M, Nelson, C, Rainbow, L, Vamos, EE, Webster, HJ, Whitehead, M, Wierzbicki, C, Angyal, A, Green, LR, Whiteley, M, Betteridge, E, Bronner, IF, Farr, BW, Goodwin, S, Lensing, SV, McCarthy, SA, Quail, MA, Rajan, D, Redshaw, NM, Scott, C, Shirley, L, Thurston, SAJ, Rowe, W, Gaskin, A, Le-Viet, T, Bonfield, J, Liddle, J, Whitwham, A
Publication Year: 2022
Collection: Bournemouth University Research Online (BURO)
Description: This paper uses a robust method of spatial epidemiological analysis to assess the spatial growth rate of multiple lineages of SARS-CoV-2 in the local authority areas of England, September 2020–December 2021. Using the genomic surveillance records of the COVID-19 Genomics UK (COG-UK) Consortium, the analysis identifies a substantial (7.6-fold) difference in the average rate of spatial growth of 37 sample lineages, from the slowest (Delta AY.4.3) to the fastest (Omicron BA.1). Spatial growth of the Omicron (B.1.1.529 and BA) variant was found to be 2.81× faster than the Delta (B.1.617.2 and AY) variant and 3.76× faster than the Alpha (B.1.1.7 and Q) variant. In addition to AY.4.2 (a designated variant under investigation, VUI-21OCT-01), three Delta sublineages (AY.43, AY.98 and AY.120) were found to display a statistically faster rate of spatial growth than the parent lineage and would seem to merit further investigation. We suggest that the monitoring of spatial growth rates is a potentially valuable adjunct to outbreak response procedures for emerging SARS-CoV-2 variants in a defined population.
Document Type: article in journal/newspaper
File Description: application/pdf
Language: English
Relation: https://eprints.bournemouth.ac.uk/39820/1/spatial-growth-rate-of-emerging-sars-cov-2-lineages-in-england-september-2020-december-2021.pdf; Smallman-Raynor, M., Cliff, A., Robson, S., Connor, T., Loman, N., Golubchik, T, Martinez Nunez, R., Bonsall, D, Rambaut, A, Snell, L., Livett, R, Ludden, C, Corden, S, Nastouli, E, Nebbia, G, Johnston, I, Lythgoe, K, Torok, M., Goodfellow, I., Prieto, J., Saeed, K, Jackson, D., Houlihan, C, Frampton, D, Hamilton, W., Witney, A., Bucca, G, Pope, C., Moore, C, Thomson, E., Harrison, E., Smith, C., Rogan, F, Beckwith, S., Murray, A, Singleton, D, Eastick, K, Sheridan, L., Randell, P., Jackson, L., Ariani, C., Gonçalves, S, Fairley, D., Loose, M., Watkins, J, Moses, S, Nicholls, S, Bull, M, Amato, R, Smith, D., Aanensen, D., Barrett, J., Aggarwal, D, Shepherd, J., Curran, M., Parmar, S, Parker, M., Williams, C, Glaysher, S, Underwood, A., Bashton, M, Pacchiarini, N, Loveson, K., Byott, M, Carabelli, A., Templeton, K., de Silva, T., Wang, D, Langford, C., Sillitoe, J, Gunson, R., Cottrell, S, O'Grady, J, Kwiatkowski, D, Lillie, P., Cortes, N, Moore, N, Thomas, C, Burns, P., Mahungu, T., Liggett, S, Beckett, A., Holden, M., Levett, L., Osman, H, Hassan-Ibrahim, M., Simpson, D., Chand, M, Gupta, R., Darby, A., Paterson, S, Pybus, O., Volz, E., de Angelis, D, Robertson, D., Page, A., Martincorena, I, Aigrain, L, Bassett, A., Wong, N, Taha, Y, Erkiert, M., Spencer Chapman, M., Dewar, R, McHugh, M., Mookerjee, S, Aplin, S, Harvey, M, Sass, T, Umpleby, H, Wheeler, H, McKenna, J., Warne, B, Taylor, J., Chaudhry, Y, Izuagbe, R, Jahun, A., Young, G., McMurray, C., McCann, C., Nelson, A, Elliott, S, Lowe, H, Price, A, Crown, M., Rey, S, Roy, S, Temperton, B, Shaaban, S, Hesketh, A., Laing, K., Monahan, I., Heaney, J, Pelosi, E, Silviera, S, Wilson-Davies, E, Fryer, H, Adams, H, du Plessis, L, Johnson, R, Harvey, W., Hughes, J, Orton, R., Spurgin, L., Bourgeois, Y, Ruis, C, O'Toole, Á, Gourtovaia, M, Sanderson, T, Fraser, C, Edgeworth, J, Breuer, J, Michell, S., Todd, J., John, M, Buck, D, Gajee, K, Kay, G., Peacock, S., Heyburn, D, Kitchman, K, McNally, A, Pritchard, D., Dervisevic, S, Muir, P, Robinson, E, Vipond, B., Ramadan, N., Jeanes, C, Weldon, D, Catalan, J, Jones, N, da Silva Filipe, A, Williams, C, Fuchs, M, Miskelly, J, Jeffries, A., Oliver, K, Park, N., Ash, A, Koshy, C, Barrow, M, Buchan, S., Mantzouratou, A, Clark, G, Holmes, C., Campbell, S, Davis, T, Tan, N., Brown, J., Harris, K., Kidd, S., Grant, P., Xu-McCrae, L, Cox, A, Madona, P, Pond, M, Withell, K., Williams, C, Graham, C, Denton-Smith, R, Swindells, E, Turnbull, R, Sloan, T., Bosworth, A, Hutchings, S, Pymont, H., Casey, A, Ratcliffe, L, Jones, C., Knight, B., Haque, T, Hart, J, Irish-Tavares, D, Witele, E, Mower, C, Watson, L., Collins, J, Eltringham, G, Crudgington, D, Macklin, B, Iturriza-Gomara, M, Lucaci, A., McClure, P., Carlile, M, Holmes, N, Moore, C, Storey, N, Rooke, S, Yebra, G, Craine, N, Perry, M, Alikhan, N - F, Bridgett, S, Cook, K., Fearn, C, Goudarzi, S, Lyons, R., Williams, T, Haldenby, S., Durham, J, Leonard, S, Davies, R., Batra, R, Blane, B, Spyer, M., Smith, P, Yavus, M, Williams, R., Mahanama, A., Samaraweera, B, Girgis, S., Hansford, S., Green, A, Beaver, C, Bellis, K., Dorman, M., Kay, S, Prestwood, L, Rajatileka, S, Quick, J, Poplawski, R, Reynolds, N, Mack, A, Morriss, A, Whalley, T, Patel, B, Georgana, I, Hosmillo, M, Pinckert, M., Stockton, J, Henderson, J., Hollis, A, Stanley, W, Yew, W., Myers, R, Thornton, A, Adams, A, Annett, T, Asad, H, Birchley, A, Coombes, J, Evans, J., Fina, L, Gatica-Wilcox, B, Gilbert, L, Graham, L, Hey, J, Hilvers, E, Jones, S, Jones, H, Kumziene-Summerhayes, S, McKerr, C, Powell, J, Pugh, G, Taylor, S, Trotter, A., Williams, C., Kermack, L., Foulkes, B., Gallis, M, Hornsby, H., Louka, S., Pohare, M, Wolverson, P, Zhang, P, MacIntyre-Cockett, G, Trebes, A, Moll, R., Ferguson, L, Goldstein, E., Maclean, A, Tomb, R, Starinskij, I, Thomson, L, Southgate, J, Kraemer, M., Raghwani, J, Zarebski, A., Boyd, O, Geidelberg, L, Illingworth, C., Jackson, C, Pascall, D, Vattipally, S, Freeman, T., Hsu, S., Lindsey, B., James, K, Lewis, K, Tonkin-Hill, G, Tovar-Corona, J., Cox, M, Abudahab, K, Menegazzo, M, Taylor, B., Yeats, C., Mukaddas, A, Wright, D., de Oliveira Martins, L, Colquhoun, R, Hill, V, Jackson, B, McCrone, J., Medd, N, Scher, E, Keatley, J - P, Curran, T, Morgan, S, Maxwell, P, Smith, K, Eldirdiri, S, Kenyon, A, Holmes, A., Price, J., Wyatt, T, Mather, A., Skvortsov, T, Hartley, J., Guest, M, Kitchen, C, Merrick, I, Munn, R, Bertolusso, B, Lynch, J, Vernet, G, Kirk, S, Wastnedge, E, Stanley, R, Idle, G, Bradley, D., Poyner, J, Mori, M, Jones, O, Wright, V, Brooks, E, Churcher, C., Fragakis, M, Galai, K, Jermy, A, Judges, S, McManus, G., Smith, K., Westwick, E, Attwood, S., Bolt, F, Davies, A, De Lacy, E, Downing, F, Edwards, S, Meadows, L, Jeremiah, S, Smith, N, Foulser, L, Charalampous, T, Patel, A, Berry, L, Boswell, T, Fleming, V., Howson-Wells, H., Joseph, A, Khakh, M, Lister, M., Bird, P., Fallon, K, Helmer, T, Odedra, M, Shaw, J, Tang, J., Willford, N., Blakey, V, Raviprakash, V, Sheriff, N, Williams, L - A, Feltwell, T, Bedford, L, Cargill, J., Hughes, W, Moore, J, Stonehouse, S, Atkinson, L, Lee, J., Shah, D, Alcolea-Medina, A, Ohemeng-Kumi, N, Ramble, J, Sehmi, J, Williams, R, Chatterton, W, Pusok, M, Everson, W, Castigador, A, Macnaughton, E, El Bouzidi, K, Lampejo, T, Sudhanva, M, Breen, C, Sluga, G, Ahmad, S., George, R., Machin, N., Binns, D, James, V, Blacow, R, Coupland, L, Smith, L, Barton, E, Padgett, D, Scott, G, Cross, A, Mirfenderesky, M, Greenaway, J, Cole, K, Clarke, P, Duckworth, N, Walsh, S, Bicknell, K, Impey, R, Wyllie, S, Hopes, R, Bishop, C, Chalker, V, Harrison, I, Gifford, L, Molnar, Z, Auckland, C, Evans, C, Johnson, K, Partridge, D., Raza, M, Baker, P, Bonner, S, Essex, S, Murray, L., Lawton, A., Burton-Fanning, S, Payne, B., Waugh, S, Gomes, A., Kimuli, M, Murray, D., Ashfield, P, Dobie, D, Ashford, F, Best, A, Crawford, L, Cumley, N, Mayhew, M, Megram, O, Mirza, J, Moles-Garcia, E, Percival, B, Driscoll, M, Ensell, L, Lowe, H., Maftei, L, Mondani, M, Chaloner, N., Cogger, B., Easton, L., Huckson, H, Lewis, J, Lowdon, S, Malone, C., Munemo, F, Mutingwende, M, Nicodemi, R, Podplomyk, O, Somassa, T, Beggs, A, Richter, A, Cormie, C, Dias, J, Forrest, S, Higginson, E., Maes, M, Young, J, Davidson, R., Jackson, K., Turtle, L, Keeley, A., Ball, J, Byaruhanga, T, Chappell, J., Dey, J, Hill, J., Park, E., Fanaie, A, Hilson, R., Yaze, G, Lo, S, Afifi, S, Beer, R, Maksimovic, J, McCluggage, K, Spellman, K, Bresner, C, Fuller, W, Marchbank, A, Workman, T, Shelest, E, Debebe, J, Sang, F, Zamudio, M., Francois, S, Gutierrez, B, Vasylyeva, T., Flaviani, F, Ragonnet-Cronin, M, Smollett, K., Broos, A, Mair, D, Nichols, J, Nomikou, K, Tong, L, Tsatsani, I, O'Brien, S, Rushton, S, Sanderson, R, Perkins, J, Cotton, S, Gallagher, A, Allara, E, Pearson, C, Bibby, D, Dabrera, G, Ellaby, N, Gallagher, E, Hubb, J, Lackenby, A, Lee, D, Manesis, N, Mbisa, T, Platt, S, Twohig, K., Morgan, M, Aydin, A, Baker, D., Foster-Nyarko, E, Prosolek, S., Rudder, S, Baxter, C, Carvalho, S., Lavin, D, Mariappan, A, Radulescu, C, Singh, A, Tang, M, Morcrette, H, Bayzid, N, Cotic, M, Balcazar, C., Gallagher, M., Maloney, D, Stanton, T., Williamson, K., Manley, R, Michelsen, M., Sambles, C., Studholme, D., Warwick-Dugdale, J, Eccles, R, Gemmell, M, Gregory, R, Hughes, M, Nelson, C, Rainbow, L, Vamos, E., Webster, H., Whitehead, M, Wierzbicki, C, Angyal, A, Green, L., Whiteley, M, Betteridge, E, Bronner, I., Farr, B., Goodwin, S, Lensing, S., McCarthy, S., Quail, M., Rajan, D, Redshaw, N., Scott, C, Shirley, L, Thurston, S., Rowe, W, Gaskin, A, Le-Viet, T, Bonfield, J, Liddle, J and Whitwham, A, 2022. Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021. Epidemiology and Infection, 150, e145.
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  Data: Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021
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M</searchLink><br /><searchLink fieldCode="AR" term="%22Sass%2C+T%22">Sass, T</searchLink><br /><searchLink fieldCode="AR" term="%22Umpleby%2C+H%22">Umpleby, H</searchLink><br /><searchLink fieldCode="AR" term="%22Wheeler%2C+H%22">Wheeler, H</searchLink><br /><searchLink fieldCode="AR" term="%22McKenna%2C+JP%22">McKenna, JP</searchLink><br /><searchLink fieldCode="AR" term="%22Warne%2C+B%22">Warne, B</searchLink><br /><searchLink fieldCode="AR" term="%22Taylor%2C+JF%22">Taylor, JF</searchLink><br /><searchLink fieldCode="AR" term="%22Chaudhry%2C+Y%22">Chaudhry, Y</searchLink><br /><searchLink fieldCode="AR" term="%22Izuagbe%2C+R%22">Izuagbe, R</searchLink><br /><searchLink fieldCode="AR" term="%22Jahun%2C+AS%22">Jahun, AS</searchLink><br /><searchLink fieldCode="AR" term="%22Young%2C+GR%22">Young, GR</searchLink><br /><searchLink fieldCode="AR" term="%22McMurray%2C+CL%22">McMurray, CL</searchLink><br /><searchLink fieldCode="AR" term="%22McCann%2C+CM%22">McCann, CM</searchLink><br 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/><searchLink fieldCode="AR" term="%22Le-Viet%2C+T%22">Le-Viet, T</searchLink><br /><searchLink fieldCode="AR" term="%22Bonfield%2C+J%22">Bonfield, J</searchLink><br /><searchLink fieldCode="AR" term="%22Liddle%2C+J%22">Liddle, J</searchLink><br /><searchLink fieldCode="AR" term="%22Whitwham%2C+A%22">Whitwham, A</searchLink>
– Name: DatePubCY
  Label: Publication Year
  Group: Date
  Data: 2022
– Name: Subset
  Label: Collection
  Group: HoldingsInfo
  Data: Bournemouth University Research Online (BURO)
– Name: Abstract
  Label: Description
  Group: Ab
  Data: This paper uses a robust method of spatial epidemiological analysis to assess the spatial growth rate of multiple lineages of SARS-CoV-2 in the local authority areas of England, September 2020–December 2021. Using the genomic surveillance records of the COVID-19 Genomics UK (COG-UK) Consortium, the analysis identifies a substantial (7.6-fold) difference in the average rate of spatial growth of 37 sample lineages, from the slowest (Delta AY.4.3) to the fastest (Omicron BA.1). Spatial growth of the Omicron (B.1.1.529 and BA) variant was found to be 2.81× faster than the Delta (B.1.617.2 and AY) variant and 3.76× faster than the Alpha (B.1.1.7 and Q) variant. In addition to AY.4.2 (a designated variant under investigation, VUI-21OCT-01), three Delta sublineages (AY.43, AY.98 and AY.120) were found to display a statistically faster rate of spatial growth than the parent lineage and would seem to merit further investigation. We suggest that the monitoring of spatial growth rates is a potentially valuable adjunct to outbreak response procedures for emerging SARS-CoV-2 variants in a defined population.
– Name: TypeDocument
  Label: Document Type
  Group: TypDoc
  Data: article in journal/newspaper
– Name: Format
  Label: File Description
  Group: SrcInfo
  Data: application/pdf
– Name: Language
  Label: Language
  Group: Lang
  Data: English
– Name: NoteTitleSource
  Label: Relation
  Group: SrcInfo
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Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021. Epidemiology and Infection, 150, e145.
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  Data: https://eprints.bournemouth.ac.uk/39820/
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  Data: edsbas.6FBC144A
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      – TitleFull: Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021
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      – PersonEntity:
          Name:
            NameFull: Hughes, M
      – PersonEntity:
          Name:
            NameFull: Nelson, C
      – PersonEntity:
          Name:
            NameFull: Rainbow, L
      – PersonEntity:
          Name:
            NameFull: Vamos, EE
      – PersonEntity:
          Name:
            NameFull: Webster, HJ
      – PersonEntity:
          Name:
            NameFull: Whitehead, M
      – PersonEntity:
          Name:
            NameFull: Wierzbicki, C
      – PersonEntity:
          Name:
            NameFull: Angyal, A
      – PersonEntity:
          Name:
            NameFull: Green, LR
      – PersonEntity:
          Name:
            NameFull: Whiteley, M
      – PersonEntity:
          Name:
            NameFull: Betteridge, E
      – PersonEntity:
          Name:
            NameFull: Bronner, IF
      – PersonEntity:
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            NameFull: Farr, BW
      – PersonEntity:
          Name:
            NameFull: Goodwin, S
      – PersonEntity:
          Name:
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      – PersonEntity:
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      – PersonEntity:
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      – PersonEntity:
          Name:
            NameFull: Scott, C
      – PersonEntity:
          Name:
            NameFull: Shirley, L
      – PersonEntity:
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      – PersonEntity:
          Name:
            NameFull: Rowe, W
      – PersonEntity:
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            NameFull: Gaskin, A
      – PersonEntity:
          Name:
            NameFull: Le-Viet, T
      – PersonEntity:
          Name:
            NameFull: Bonfield, J
      – PersonEntity:
          Name:
            NameFull: Liddle, J
      – PersonEntity:
          Name:
            NameFull: Whitwham, A
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 01
              M: 01
              Type: published
              Y: 2022
          Identifiers:
            – Type: issn-locals
              Value: edsbas
            – Type: issn-locals
              Value: edsbas.oa
ResultId 1