Academic Journal
View in EDS

Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.

Bibliographic Details
Title: Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.
Authors: Weber, Karrie, Hedrick, David, Peacock, Aaron, Thrash, J., White, David, Achenbach, Laurie, Coates, John
Source: Applied Microbiology & Biotechnology; Jun2009, Vol. 83 Issue 3, p555-565, 11p, 2 Diagrams, 3 Charts, 3 Graphs
Subject Terms: Autotrophic bacteria, Oxidation, Iron, Anaerobic bacteria, Nitrates, Bioremediation, Uranium, Fatty acids, Organic acids, Nitrous oxide, Neisseriaceae, Lake sediments
Abstract: A lithoautotrophic, Fe(II) oxidizing, nitrate-reducing bacterium, strain 2002 (ATCC BAA-1479; =DSM 18807), was isolated as part of a study on nitrate-dependent Fe(II) oxidation in freshwater lake sediments. Here we provide an in-depth phenotypic and phylogenetic description of the isolate. Strain 2002 is a gram-negative, non-spore forming, motile, rod-shaped bacterium which tested positive for oxidase, catalase, and urease. Analysis of the complete 16S rRNA gene sequence placed strain 2002 in a clade within the family Neisseriaceae in the order Nessieriales of the Betaproteobacteria 99.3% similar to Pseudogulbenkiania subflava. Similar to P. sublfava, predominant whole cell fatty acids were identified as 16:17c, 42.4%, and 16:0, 34.1%. Whole cell difference spectra of the Fe(II) reduced minus nitrate oxidized cyctochrome content revealed a possible role of c-type cytochromes in nitrate-dependent Fe(II) oxidation. Strain 2002 was unable to oxidize aqueous or solid-phase Mn(II) with nitrate as the electron acceptor. In addition to lithotrophic growth with Fe(II), strain 2002 could alternatively grow heterotrophically with long-chain fatty acids, simple organic acids, carbohydrates, yeast extract, or casamino acids. Nitrate, nitrite, nitrous oxide, and oxygen also served as terminal electron acceptors with acetate as the electron donor. [ABSTRACT FROM AUTHOR]
Copyright of Applied Microbiology & Biotechnology is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
Database: Complementary Index
FullText Links:
  – Type: other
Text:
  Availability: 0
CustomLinks:
  – Url: https://dx.doi.org/doi:10.1007/s00253-009-1934-7
    Name: EDS - Springer Nature Journals (s7799221)
    Category: fullText
    Text: View record at Springer
Header DbId: edb
DbLabel: Complementary Index
An: 40076847
RelevancyScore: 833
AccessLevel: 6
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 833.48291015625
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AR" term="%22Weber%2C+Karrie%22">Weber, Karrie</searchLink><br /><searchLink fieldCode="AR" term="%22Hedrick%2C+David%22">Hedrick, David</searchLink><br /><searchLink fieldCode="AR" term="%22Peacock%2C+Aaron%22">Peacock, Aaron</searchLink><br /><searchLink fieldCode="AR" term="%22Thrash%2C+J%2E%22">Thrash, J.</searchLink><br /><searchLink fieldCode="AR" term="%22White%2C+David%22">White, David</searchLink><br /><searchLink fieldCode="AR" term="%22Achenbach%2C+Laurie%22">Achenbach, Laurie</searchLink><br /><searchLink fieldCode="AR" term="%22Coates%2C+John%22">Coates, John</searchLink>
– Name: TitleSource
  Label: Source
  Group: Src
  Data: Applied Microbiology & Biotechnology; Jun2009, Vol. 83 Issue 3, p555-565, 11p, 2 Diagrams, 3 Charts, 3 Graphs
– Name: Subject
  Label: Subject Terms
  Group: Su
  Data: <searchLink fieldCode="DE" term="%22Autotrophic+bacteria%22">Autotrophic bacteria</searchLink><br /><searchLink fieldCode="DE" term="%22Oxidation%22">Oxidation</searchLink><br /><searchLink fieldCode="DE" term="%22Iron%22">Iron</searchLink><br /><searchLink fieldCode="DE" term="%22Anaerobic+bacteria%22">Anaerobic bacteria</searchLink><br /><searchLink fieldCode="DE" term="%22Nitrates%22">Nitrates</searchLink><br /><searchLink fieldCode="DE" term="%22Bioremediation%22">Bioremediation</searchLink><br /><searchLink fieldCode="DE" term="%22Uranium%22">Uranium</searchLink><br /><searchLink fieldCode="DE" term="%22Fatty+acids%22">Fatty acids</searchLink><br /><searchLink fieldCode="DE" term="%22Organic+acids%22">Organic acids</searchLink><br /><searchLink fieldCode="DE" term="%22Nitrous+oxide%22">Nitrous oxide</searchLink><br /><searchLink fieldCode="DE" term="%22Neisseriaceae%22">Neisseriaceae</searchLink><br /><searchLink fieldCode="DE" term="%22Lake+sediments%22">Lake sediments</searchLink>
– Name: Abstract
  Label: Abstract
  Group: Ab
  Data: A lithoautotrophic, Fe(II) oxidizing, nitrate-reducing bacterium, strain 2002 (ATCC BAA-1479; =DSM 18807), was isolated as part of a study on nitrate-dependent Fe(II) oxidation in freshwater lake sediments. Here we provide an in-depth phenotypic and phylogenetic description of the isolate. Strain 2002 is a gram-negative, non-spore forming, motile, rod-shaped bacterium which tested positive for oxidase, catalase, and urease. Analysis of the complete 16S rRNA gene sequence placed strain 2002 in a clade within the family Neisseriaceae in the order Nessieriales of the Betaproteobacteria 99.3% similar to Pseudogulbenkiania subflava. Similar to P. sublfava, predominant whole cell fatty acids were identified as 16:17c, 42.4%, and 16:0, 34.1%. Whole cell difference spectra of the Fe(II) reduced minus nitrate oxidized cyctochrome content revealed a possible role of c-type cytochromes in nitrate-dependent Fe(II) oxidation. Strain 2002 was unable to oxidize aqueous or solid-phase Mn(II) with nitrate as the electron acceptor. In addition to lithotrophic growth with Fe(II), strain 2002 could alternatively grow heterotrophically with long-chain fatty acids, simple organic acids, carbohydrates, yeast extract, or casamino acids. Nitrate, nitrite, nitrous oxide, and oxygen also served as terminal electron acceptors with acetate as the electron donor. [ABSTRACT FROM AUTHOR]
– Name: Abstract
  Label:
  Group: Ab
  Data: <i>Copyright of Applied Microbiology & Biotechnology is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=40076847
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1007/s00253-009-1934-7
    Languages:
      – Code: eng
        Text: English
    PhysicalDescription:
      Pagination:
        PageCount: 11
        StartPage: 555
    Subjects:
      – SubjectFull: Autotrophic bacteria
        Type: general
      – SubjectFull: Oxidation
        Type: general
      – SubjectFull: Iron
        Type: general
      – SubjectFull: Anaerobic bacteria
        Type: general
      – SubjectFull: Nitrates
        Type: general
      – SubjectFull: Bioremediation
        Type: general
      – SubjectFull: Uranium
        Type: general
      – SubjectFull: Fatty acids
        Type: general
      – SubjectFull: Organic acids
        Type: general
      – SubjectFull: Nitrous oxide
        Type: general
      – SubjectFull: Neisseriaceae
        Type: general
      – SubjectFull: Lake sediments
        Type: general
    Titles:
      – TitleFull: Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Weber, Karrie
      – PersonEntity:
          Name:
            NameFull: Hedrick, David
      – PersonEntity:
          Name:
            NameFull: Peacock, Aaron
      – PersonEntity:
          Name:
            NameFull: Thrash, J.
      – PersonEntity:
          Name:
            NameFull: White, David
      – PersonEntity:
          Name:
            NameFull: Achenbach, Laurie
      – PersonEntity:
          Name:
            NameFull: Coates, John
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 01
              M: 06
              Text: Jun2009
              Type: published
              Y: 2009
          Identifiers:
            – Type: issn-print
              Value: 01757598
          Numbering:
            – Type: volume
              Value: 83
            – Type: issue
              Value: 3
          Titles:
            – TitleFull: Applied Microbiology & Biotechnology
              Type: main
ResultId 1