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Using registries to integrate bioinformatics tools and services into workbench environments.

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Τίτλος: Using registries to integrate bioinformatics tools and services into workbench environments.
Συγγραφείς: Ménager, Hervé, Kalaš, Matúš, Rapacki, Kristoffer, Ison, Jon
Πηγή: International Journal on Software Tools for Technology Transfer; Nov2016, Vol. 18 Issue 6, p581-586, 6p
Θεματικοί όροι: Bioinformatics, Workbenches, Data analysis, Elixir (Computer program language), Biological research, Software development tools
Περίληψη: The diversity and complexity of bioinformatics resources presents significant challenges to their localisation, deployment and use, creating a need for reliable systems that address these issues. Meanwhile, users demand increasingly usable and integrated ways to access and analyse data, especially within convenient, integrated 'workbench' environments. Resource descriptions are the core element of registry and workbench systems, which are used to both help the user find and comprehend available software tools, data resources, and Web Services, and to localise, execute and combine them. The descriptions are, however, hard and expensive to create and maintain, because they are volatile and require an exhaustive knowledge of the described resource, its applicability to biological research, and the data model and syntax used to describe it. We present here the Workbench Integration Enabler, a software component that will ease the integration of bioinformatics resources in a workbench environment, using their description provided by the existing ELIXIR Tools and Data Services Registry. [ABSTRACT FROM AUTHOR]
Copyright of International Journal on Software Tools for Technology Transfer is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
Βάση Δεδομένων: Complementary Index
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  Data: Using registries to integrate bioinformatics tools and services into workbench environments.
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  Data: <searchLink fieldCode="AR" term="%22Ménager%2C+Hervé%22">Ménager, Hervé</searchLink><br /><searchLink fieldCode="AR" term="%22Kalaš%2C+Matúš%22">Kalaš, Matúš</searchLink><br /><searchLink fieldCode="AR" term="%22Rapacki%2C+Kristoffer%22">Rapacki, Kristoffer</searchLink><br /><searchLink fieldCode="AR" term="%22Ison%2C+Jon%22">Ison, Jon</searchLink>
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  Data: International Journal on Software Tools for Technology Transfer; Nov2016, Vol. 18 Issue 6, p581-586, 6p
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  Data: <searchLink fieldCode="DE" term="%22Bioinformatics%22">Bioinformatics</searchLink><br /><searchLink fieldCode="DE" term="%22Workbenches%22">Workbenches</searchLink><br /><searchLink fieldCode="DE" term="%22Data+analysis%22">Data analysis</searchLink><br /><searchLink fieldCode="DE" term="%22Elixir+%28Computer+program+language%29%22">Elixir (Computer program language)</searchLink><br /><searchLink fieldCode="DE" term="%22Biological+research%22">Biological research</searchLink><br /><searchLink fieldCode="DE" term="%22Software+development+tools%22">Software development tools</searchLink>
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  Label: Abstract
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  Data: The diversity and complexity of bioinformatics resources presents significant challenges to their localisation, deployment and use, creating a need for reliable systems that address these issues. Meanwhile, users demand increasingly usable and integrated ways to access and analyse data, especially within convenient, integrated 'workbench' environments. Resource descriptions are the core element of registry and workbench systems, which are used to both help the user find and comprehend available software tools, data resources, and Web Services, and to localise, execute and combine them. The descriptions are, however, hard and expensive to create and maintain, because they are volatile and require an exhaustive knowledge of the described resource, its applicability to biological research, and the data model and syntax used to describe it. We present here the Workbench Integration Enabler, a software component that will ease the integration of bioinformatics resources in a workbench environment, using their description provided by the existing ELIXIR Tools and Data Services Registry. [ABSTRACT FROM AUTHOR]
– Name: Abstract
  Label:
  Group: Ab
  Data: <i>Copyright of International Journal on Software Tools for Technology Transfer is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=118527156
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              Text: Nov2016
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