Academic Journal
Standardizing Cell Ontology terms for cross-study integration in the female reproductive tract.
| Τίτλος: | Standardizing Cell Ontology terms for cross-study integration in the female reproductive tract. |
|---|---|
| Συγγραφείς: | Ong HT; Mechanobiology Institute, National University of Singapore, Singapore, Singapore., Saunders DC; Stanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA.; Department of Pediatrics, Division of Endocrinology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA., Eastwood C; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK., Puig-Barbe A; EMBL-European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK., Kochersberger A; Buck Institute for Research on Aging, Novato, CA, USA., Galligos A; Stowers Institute for Medical Research, Kansas City, MO, USA., Marshall B; Chan Zuckerberg Initiative Biohub, Redwood City, CA, USA., Johnson BK; Department of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA., Kratka CE; Department of Obstetrics and Gynecology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA., Jin C; Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA., Betancur D; Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA.; Sylvester Comprehensive Cancer Center, Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA., Guimarães GR; Laboratory of Bioinformatics and Computational Biology, Division of Experimental and Translational Research, Brazilian National Cancer Institute (INCA), Rio de Janeiro, Brazil., Machlin JH; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.; Cellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI, USA., Isola JVV; Aging & Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.; Nutrition College, Federal University of Pelotas, Pelotas, Brazil., Adam KM; Buck Institute for Research on Aging, Novato, CA, USA.; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA., Morales-Casanova O; Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA.; Sylvester Comprehensive Cancer Center, Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA., Djirackor S; Department of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA., Schissel T; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA., Lorenzi V; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.; EMBL-European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK., Wang X; Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA., Shen X; Mechanobiology Institute, National University of Singapore, Singapore, Singapore., Soygur B; Buck Institute for Research on Aging, Novato, CA, USA.; Center for Healthy Aging in Women, Buck Institute for Research on Aging, Novato, CA, USA., Aevermann B; Chan Zuckerberg Initiative Biohub, Redwood City, CA, USA., Gaylord EA; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.; Center for Reproductive Sciences, Department of Obstetrics, Gynecology and Reproductive Science, University of California, San Francisco, San Francisco, CA, USA.; Bakar Aging Research Institute, University of California, San Francisco, San Francisco, CA, USA., Foecke MH; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.; Center for Reproductive Sciences, Department of Obstetrics, Gynecology and Reproductive Science, University of California, San Francisco, San Francisco, CA, USA.; Bakar Aging Research Institute, University of California, San Francisco, San Francisco, CA, USA.; Vitra Labs Inc., San Francisco, CA, USA., Tavares NK; Chan Zuckerberg Initiative Biohub, Redwood City, CA, USA., Samuel RM; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA., Szady S; Department of Medicine, Cardiovascular Research Center, Yale School of Medicine, New Haven, CT, USA., Mahalingam S; Department of Obstetrics, Gynecology and Women's Health, School of Medicine, University of Missouri-Columbia, Columbia, MO, USA., Biswas S; Aging & Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA., Liao W; New York Genome Center, New York, NY, USA., Benayoun BA; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.; Cancer Biology Department, USC Keck School of Medicine, USC Norris Comprehensive Cancer Center, Los Angeles, CA, USA.; Pharmacology and Pharmaceutical Sciences Department, USC Mann School of Pharmacy and Pharmacology, Los Angeles, CA, USA.; USC Stem Cell Initiative, Los Angeles, CA, USA., Chung H; Department of Medicine, Cardiovascular Research Center, Yale School of Medicine, New Haven, CT, USA.; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.; Department of Obstetrics, Gynecology and Reproductive Sciences, Yale School of Medicine, New Haven, CT, USA.; Yale Center for Research on Aging, Yale School of Medicine, New Haven, CT, USA., Winuthayanon W; Department of Obstetrics, Gynecology and Women's Health, School of Medicine, University of Missouri-Columbia, Columbia, MO, USA.; Division of Animal Sciences, College of Agriculture, Food and Natural Resources, University of Missouri-Columbia, Columbia, MO, USA., Li JZ; Department of Molecular Genetics and Genome Sciences, College of Medicine, University of Oklahoma Health Campus, Oklahoma City, OK, USA.; Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA.; Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Molè MA; Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA, USA.; Department of Obstetrics and Gynecology, Stanford University School of Medicine, Stanford, CA, USA.; Dunlevie Maternal-Fetal Medicine Center for Discovery, Innovation and Impact, Stanford University School of Medicine, Stanford, CA, USA., Angelo M; Department of Pathology, Stanford University, Stanford, CA, USA.; Immunology Program, Stanford University School of Medicine, Stanford, CA, USA.; Cancer Biology Program, Stanford University School of Medicine, Stanford, CA, USA.; Parker Institute for Cancer Immunotherapy, San Francisco, CA, USA., Jeudin P; Sylvester Comprehensive Cancer Center, Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA., Drapkin R; Penn Ovarian Cancer Research Center, Department of Obstetrics and Gynecology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.; Basser Center for BRCA, Abramson Cancer Center, University of Pennsylvania School of Medicine, Philadelphia, PA, USA., Shikanov A; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.; Cellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI, USA.; Department of Obstetrics and Gynecology, University of Michigan, Ann Arbor, MI, USA., Laird DJ; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, San Francisco, CA, USA.; Center for Reproductive Sciences, Department of Obstetrics, Gynecology and Reproductive Science, University of California, San Francisco, San Francisco, CA, USA.; Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA., Duncan F; Buck Institute for Research on Aging, Novato, CA, USA.; Department of Obstetrics and Gynecology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA., Shen H; Department of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA., Garrison JL; Buck Institute for Research on Aging, Novato, CA, USA.; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.; Center for Healthy Aging in Women, Buck Institute for Research on Aging, Novato, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.; Productive Health Global Consortium, Novato, CA, USA., Boroni M; Laboratory of Bioinformatics and Computational Biology, Division of Experimental and Translational Research, Brazilian National Cancer Institute (INCA), Rio de Janeiro, Brazil.; Experimental Medicine Research Cluster (EMRC), Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil., Stout MB; Aging & Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.; Oklahoma City Veterans Affairs Medical Center, Oklahoma City, OK, USA., Vento-Tormo R; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.; Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK., George SHL; Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA.; Sylvester Comprehensive Cancer Center, Miller School of Medicine, Medical Campus, University of Miami, Miami, FL, USA., Suh Y; Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA.; Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY, USA., Young JL; Mechanobiology Institute, National University of Singapore, Singapore, Singapore.; Department of Biomedical Engineering, National University of Singapore, Singapore, Singapore., Laronda MM; Stanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA.; Department of Pediatrics, Division of Endocrinology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.; Department of Obstetrics and Gynecology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA. |
| Πηγή: | Science advances [Sci Adv] 2026 Oct 09; Vol. 12 (41), pp. eaef2358. Date of Electronic Publication: 2026 Oct 09. |
| Τύπος έκδοσης: | Journal Article; Review |
| Γλώσσα: | English |
| Στοιχεία περιοδικού: | Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101653440 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2375-2548 (Electronic) Linking ISSN: 23752548 NLM ISO Abbreviation: Sci Adv Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Washington, DC : American Association for the Advancement of Science, [2015]- |
| Ιατρικοί όροι (MeSH): | Genitalia, Female*/cytology , Genitalia, Female*/metabolism , Biological Ontologies*, Ovary/cytology ; Ovary/metabolism ; Female ; Humans ; Animals |
| Περίληψη: | The female reproductive tract is essential for fertility, pregnancy, and overall health, yet many of its cellular components remain poorly defined. Recent advances in single-cell and spatial transcriptomics have begun to reveal this complexity, but inconsistent naming of cell types and states has limited the ability to compare findings across studies. To address this challenge, an international group of reproductive biologists and ontology experts collaborated to harmonize annotations within Cell Ontology, focusing on the ovary, fallopian tube, and uterus. Standardized terms are proposed for major epithelial, stromal, and germ cell populations, supported by marker gene sets and anatomical linkages. This framework provides a shared reference that can be used to harmonize existing datasets and guide annotation of future studies, enabling consistent classification of oocytes, granulosa, theca, luteal, epithelial, stromal, and immune cells across tissues. By establishing a unified taxonomy, this work lays the foundation for integrating datasets, supporting cross-tissue comparisons, and advancing the understanding of reproductive biology, health, and disease. |
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| Grant Information: | U01 HD110336 United States HD NICHD NIH HHS; R01 HD108198 United States HD NICHD NIH HHS; R35 GM160070 United States GM NIGMS NIH HHS; R01 HD099402 United States HD NICHD NIH HHS; INV-003385 United States Bill & Melinda Gates Foundation; F31 HD110208 United States HD NICHD NIH HHS; OT2 OD033756 United States OD NIH HHS; RF1 AG093116 United States AG NIA NIH HHS; U54 AG075932 United States AG NIA NIH HHS; R01 AG069750 United States AG NIA NIH HHS; R01 HD105752 United States HD NICHD NIH HHS; P30 CA240139 United States CA NCI NIH HHS; United Kingdom WT_ Wellcome Trust; R01 CA230916 United States CA NCI NIH HHS; F31 HD116553 United States HD NICHD NIH HHS; UH3 CA268105 United States CA NCI NIH HHS; F31 HD108875 United States HD NICHD NIH HHS; R01 HD104173 United States HD NICHD NIH HHS; R01 HD097087 United States HD NICHD NIH HHS |
| Entry Date(s): | Date Created: 20261009 Date Completed: 20261009 Latest Revision: 20261012 |
| Update Code: | 20261012 |
| PubMed Central ID: | PMC13651846 |
| DOI: | 10.1126/sciadv.aef2358 |
| PMID: | 42853913 |
| Βάση Δεδομένων: | MEDLINE |
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