Academic Journal
Identification and in-depth characterization of clinical isolates of Peribacillus frigoritolerans.
| Τίτλος: | Identification and in-depth characterization of clinical isolates of Peribacillus frigoritolerans. |
|---|---|
| Συγγραφείς: | Calvigioni M; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy., Rossi V; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy., Celandroni F; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy., Barnini S; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy., Lupetti A; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy., Mazzantini D; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy., Ghelardi E; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy. |
| Πηγή: | Microbiology spectrum [Microbiol Spectr] 2026 Aug 04; Vol. 14 (8), pp. e0024526. Date of Electronic Publication: 2026 Jul 15. |
| Τύπος έκδοσης: | Journal Article |
| Γλώσσα: | English |
| Στοιχεία περιοδικού: | Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Washington, DC : ASM Press, 2013- |
| Ιατρικοί όροι (MeSH): | Bacillaceae*/genetics , Bacillaceae*/isolation & purification , Bacillaceae*/classification , Bacillaceae*/drug effects , Gram-Positive Bacterial Infections*/microbiology, RNA, Ribosomal, 16S/genetics ; Anti-Bacterial Agents/pharmacology ; Virulence Factors/genetics ; Biofilms/growth & development ; Humans ; Whole Genome Sequencing ; Virulence ; Phylogeny ; Microbial Sensitivity Tests ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Drug Resistance, Bacterial ; Genome, Bacterial |
| Περίληψη: | Peribacillus frigoritolerans is a bacterial species commonly found in the environment and used as a plant-growth promoter and biocontrol agent in agriculture. Recent evidence has proven that Peribacillus spp. are also able to cause severe infections in humans, thus emerging as new human pathogens. In this study, for the first time, 10 P. frigoritolerans strains were isolated from human samples (both superficial and sterile deep body sites) and characterized in terms of morphology, lifestyle, genetics, and virulence. The molecular identification by MALDI-TOF mass spectrometry and 16S rRNA gene sequencing was inconclusive, while whole-genome sequencing was effective in properly identifying isolates within the species P. frigoritolerans. The pangenome analysis provided an overview of the virulence potential of P. frigoritolerans, revealing the presence of genes involved in antibiotic resistance and toxin/exoenzyme production. Phenotypically, the strains displayed different features and behaviors, indicating strain-specific properties and high intra-species variability. A part of the strains exhibited virulence factors, being able to swim and swarm, form biofilms, and produce enzymes and toxins. Antibiotic susceptibility testing revealed resistance to ampicillin for all strains and resistance to erythromycin and clindamycin for some of them. Antimicrobial activity against Gram-positive bacteria and fungi was demonstrated, further corroborating the presence of putative bacteriocin/antimicrobial peptide-encoding genes. An association between the overall virulence potential and infection site/severity was hypothesized. Altogether, these findings highlight the extreme diversity within the species, reveal the strain-dependent pathogenic potential of P. frigoritolerans, and support its role as a candidate human pathogen. Importance: This study provides insights into the infectious role of Peribacillus frigoritolerans, an almost unknown bacterial species with agrobiotechnological potential but no history of human infections. This is the first report of P. frigoritolerans isolation from human clinical samples. Ten P. frigorit-olerans strains were herein characterized for their morphology, lifestyle, genetics, and virulence, highlighting an extreme intra-species variability and the potential to act as pathogens in humans. Importantly, this study points out the need for unconventional methods for proper identification of this species, since traditional techniques result inconclusive. Resistance to commonly prescribed antibiotics was also evidenced, confirming the importance of antimicrobial testing on clinical iso-lates. This study lays the foundation for a more in-depth characterization of Peribacillus spp. in the clinical context. |
| Competing Interests: | The authors declare no conflict of interest. |
| References: | Sci Total Environ. 2023 Apr 15;869:161809. (PMID: 36702282) Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. (PMID: 36263822) Curr Microbiol. 2020 Aug;77(8):1916-1923. (PMID: 32248281) Microb Genom. 2021 Nov;7(11):. (PMID: 34739369) J Appl Microbiol. 2022 Aug;133(2):1078-1088. (PMID: 35611609) Int J Biol Macromol. 2024 Oct;277(Pt 4):134583. (PMID: 39122074) Pest Manag Sci. 2024 Feb;80(2):724-733. (PMID: 37774135) Nat Commun. 2020 May 19;11(1):2500. (PMID: 32427907) Front Microbiol. 2018 Aug 17;9:1946. (PMID: 30174669) Nat Commun. 2019 May 16;10(1):2182. (PMID: 31097708) Biocontrol Sci. 2021;26(2):67-74. (PMID: 34092716) Curr Microbiol. 2023 Jan 20;80(2):80. (PMID: 36662359) J Appl Microbiol. 2024 Apr 1;135(4):. (PMID: 38486365) Biotechnol J. 2024 Jan;19(1):e2300330. (PMID: 38180313) Int J Syst Evol Microbiol. 2020 Jan;70(1):406-438. (PMID: 31617837) Front Microbiol. 2024 Jul 03;15:1415400. (PMID: 39021634) Bioinformatics. 2015 Nov 15;31(22):3691-3. (PMID: 26198102) ACS Omega. 2023 Sep 13;8(38):34982-34994. (PMID: 37779958) Microb Pathog. 2021 Jan;150:104734. (PMID: 33429050) Emerg Microbes Infect. 2022 Dec;11(1):2340-2349. (PMID: 36032037) Front Plant Sci. 2025 Apr 15;16:1570986. (PMID: 40303853) Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623) Gene. 2024 Jul 1;914:148395. (PMID: 38531176) J Bacteriol. 1991 Jan;173(2):697-703. (PMID: 1987160) Microorganisms. 2023 Oct 12;11(10):. (PMID: 37894197) Microorganisms. 2022 Nov 28;10(12):. (PMID: 36557608) Methods Mol Biol. 2020;2075:285-294. (PMID: 31584170) Environ Microbiol Rep. 2024 Dec;16(6):e70053. (PMID: 39604090) Front Microbiol. 2023 Sep 01;14:1219581. (PMID: 37720141) Int J Food Microbiol. 2015 Mar 16;197:30-9. (PMID: 25555227) Microbiol Spectr. 2019 Nov;7(6):. (PMID: 31858953) Nat Biotechnol. 2023 Nov;41(11):1633-1644. (PMID: 36823356) Nucleic Acids Res. 2022 Jan 7;50(D1):D912-D917. (PMID: 34850947) Pathogens. 2022 Oct 18;11(10):. (PMID: 36297260) Access Microbiol. 2025 Jan 14;7(1):. (PMID: 39810798) Microorganisms. 2023 Sep 05;11(9):. (PMID: 37764079) Microbiol Resour Announc. 2022 May 19;11(5):e0015222. (PMID: 35389269) J Comput Biol. 2012 May;19(5):455-77. (PMID: 22506599) Sci Rep. 2022 Nov 7;12(1):18883. (PMID: 36344604) J Hazard Mater. 2024 Jan 5;461:132539. (PMID: 37717445) Proc Natl Acad Sci U S A. 1965 Sep;54(3):704-11. (PMID: 4956288) Nucleic Acids Res. 2018 Jul 2;46(W1):W278-W281. (PMID: 29788290) J Bacteriol. 2023 Jun 27;205(6):e0013323. (PMID: 37195186) Front Microbiol. 2023 Dec 08;14:1290697. (PMID: 38143858) Front Microbiol. 2023 May 05;14:1127321. (PMID: 37234535) Arch Microbiol. 2022 Feb 4;204(3):162. (PMID: 35119529) Clin Infect Dis. 2007 Jan 15;44(2):280-6. (PMID: 17173232) Environ Microbiol. 2012 Nov;14(11):2870-90. (PMID: 22882546) Saudi J Biol Sci. 2020 Oct;27(10):2660-2668. (PMID: 32994725) Sci Rep. 2024 Oct 22;14(1):24909. (PMID: 39438497) Appl Environ Microbiol. 2022 Sep 27;88(18):e0099122. (PMID: 36036594) Curr Microbiol. 2020 Oct;77(10):2896-2903. (PMID: 32651608) |
| Contributed Indexing: | Keywords: Peribacillus frigoritolerans; antibiotic resistance; genome analysis; identification; microbiological characterization; virulence potential |
| Substance Nomenclature: | 0 (RNA, Ribosomal, 16S) 0 (Anti-Bacterial Agents) 0 (Virulence Factors) |
| Entry Date(s): | Date Created: 20260715 Date Completed: 20260807 Latest Revision: 20260923 |
| Update Code: | 20260923 |
| PubMed Central ID: | PMC13436373 |
| DOI: | 10.1128/spectrum.00245-26 |
| PMID: | 42454910 |
| Βάση Δεδομένων: | MEDLINE |
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| Header | DbId: cmedm DbLabel: MEDLINE An: 42454910 AccessLevel: 3 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Identification and in-depth characterization of clinical isolates of Peribacillus frigoritolerans. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Calvigioni+M%22">Calvigioni M</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Rossi+V%22">Rossi V</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Celandroni+F%22">Celandroni F</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Barnini+S%22">Barnini S</searchLink>; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Lupetti+A%22">Lupetti A</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Mazzantini+D%22">Mazzantini D</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.<br /><searchLink fieldCode="AU" term="%22Ghelardi+E%22">Ghelardi E</searchLink>; Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.; Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101634614%22">Microbiology spectrum</searchLink> [Microbiol Spectr] 2026 Aug 04; Vol. 14 (8), pp. e0024526. <i>Date of Electronic Publication: </i>2026 Jul 15. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: Language Label: Language Group: Lang Data: English – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22ASM+Press%22">ASM Press </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>101634614 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2165-0497 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2221650497%22">21650497 </searchLink><i>NLM ISO Abbreviation: </i>Microbiol Spectr <i>Subsets: </i>MEDLINE – Name: PublisherInfo Label: Imprint Name(s) Group: PubInfo Data: <i>Original Publication</i>: Washington, DC : ASM Press, 2013- – Name: SubjectMESH Label: MeSH Terms Group: Su Data: <searchLink fieldCode="MM" term="%22Bacillaceae%22">Bacillaceae*</searchLink>/<searchLink fieldCode="MM" term="%22Bacillaceae+genetics%22">genetics</searchLink> <br /><searchLink fieldCode="MM" term="%22Bacillaceae%22">Bacillaceae*</searchLink>/<searchLink fieldCode="MM" term="%22Bacillaceae+isolation+%26+purification%22">isolation & purification</searchLink> <br /><searchLink fieldCode="MM" term="%22Bacillaceae%22">Bacillaceae*</searchLink>/<searchLink fieldCode="MM" term="%22Bacillaceae+classification%22">classification</searchLink> <br /><searchLink fieldCode="MM" term="%22Bacillaceae%22">Bacillaceae*</searchLink>/<searchLink fieldCode="MM" term="%22Bacillaceae+drug+effects%22">drug effects</searchLink> <br /><searchLink fieldCode="MM" term="%22Gram-Positive+Bacterial+Infections%22">Gram-Positive Bacterial Infections*</searchLink>/<searchLink fieldCode="MM" term="%22Gram-Positive+Bacterial+Infections+microbiology%22">microbiology</searchLink><br /><searchLink fieldCode="MH" term="%22RNA%2C+Ribosomal%2C+16S%22">RNA, Ribosomal, 16S</searchLink>/<searchLink fieldCode="MH" term="%22RNA%2C+Ribosomal%2C+16S+genetics%22">genetics</searchLink> ; <searchLink fieldCode="MH" term="%22Anti-Bacterial+Agents%22">Anti-Bacterial Agents</searchLink>/<searchLink fieldCode="MH" term="%22Anti-Bacterial+Agents+pharmacology%22">pharmacology</searchLink> ; <searchLink fieldCode="MH" term="%22Virulence+Factors%22">Virulence Factors</searchLink>/<searchLink fieldCode="MH" term="%22Virulence+Factors+genetics%22">genetics</searchLink> ; <searchLink fieldCode="MH" term="%22Biofilms%22">Biofilms</searchLink>/<searchLink fieldCode="MH" term="%22Biofilms+growth+%26+development%22">growth & development</searchLink> ; <searchLink fieldCode="MH" term="%22Humans%22">Humans</searchLink> ; <searchLink fieldCode="MH" term="%22Whole+Genome+Sequencing%22">Whole Genome Sequencing</searchLink> ; <searchLink fieldCode="MH" term="%22Virulence%22">Virulence</searchLink> ; <searchLink fieldCode="MH" term="%22Phylogeny%22">Phylogeny</searchLink> ; <searchLink fieldCode="MH" term="%22Microbial+Sensitivity+Tests%22">Microbial Sensitivity Tests</searchLink> ; <searchLink fieldCode="MH" term="%22Spectrometry%2C+Mass%2C+Matrix-Assisted+Laser+Desorption-Ionization%22">Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</searchLink> ; <searchLink fieldCode="MH" term="%22Drug+Resistance%2C+Bacterial%22">Drug Resistance, Bacterial</searchLink> ; <searchLink fieldCode="MH" term="%22Genome%2C+Bacterial%22">Genome, Bacterial</searchLink> – Name: Abstract Label: Abstract Group: Ab Data: Peribacillus frigoritolerans is a bacterial species commonly found in the environment and used as a plant-growth promoter and biocontrol agent in agriculture. Recent evidence has proven that Peribacillus spp. are also able to cause severe infections in humans, thus emerging as new human pathogens. In this study, for the first time, 10 P. frigoritolerans strains were isolated from human samples (both superficial and sterile deep body sites) and characterized in terms of morphology, lifestyle, genetics, and virulence. The molecular identification by MALDI-TOF mass spectrometry and 16S rRNA gene sequencing was inconclusive, while whole-genome sequencing was effective in properly identifying isolates within the species P. frigoritolerans. The pangenome analysis provided an overview of the virulence potential of P. frigoritolerans, revealing the presence of genes involved in antibiotic resistance and toxin/exoenzyme production. Phenotypically, the strains displayed different features and behaviors, indicating strain-specific properties and high intra-species variability. A part of the strains exhibited virulence factors, being able to swim and swarm, form biofilms, and produce enzymes and toxins. Antibiotic susceptibility testing revealed resistance to ampicillin for all strains and resistance to erythromycin and clindamycin for some of them. Antimicrobial activity against Gram-positive bacteria and fungi was demonstrated, further corroborating the presence of putative bacteriocin/antimicrobial peptide-encoding genes. An association between the overall virulence potential and infection site/severity was hypothesized. Altogether, these findings highlight the extreme diversity within the species, reveal the strain-dependent pathogenic potential of P. frigoritolerans, and support its role as a candidate human pathogen.<br />Importance: This study provides insights into the infectious role of Peribacillus frigoritolerans, an almost unknown bacterial species with agrobiotechnological potential but no history of human infections. This is the first report of P. frigoritolerans isolation from human clinical samples. Ten P. frigorit-olerans strains were herein characterized for their morphology, lifestyle, genetics, and virulence, highlighting an extreme intra-species variability and the potential to act as pathogens in humans. Importantly, this study points out the need for unconventional methods for proper identification of this species, since traditional techniques result inconclusive. Resistance to commonly prescribed antibiotics was also evidenced, confirming the importance of antimicrobial testing on clinical iso-lates. This study lays the foundation for a more in-depth characterization of Peribacillus spp. in the clinical context. – Name: Abstract Label: Competing Interests Group: Ab Data: The authors declare no conflict of interest. – Name: Ref Label: References Group: RefInfo Data: Sci Total Environ. 2023 Apr 15;869:161809. (PMID: <searchLink fieldCode="PM" term="%2236702282%22">36702282)</searchLink><br />Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. (PMID: <searchLink fieldCode="PM" term="%2236263822%22">36263822)</searchLink><br />Curr Microbiol. 2020 Aug;77(8):1916-1923. (PMID: <searchLink fieldCode="PM" term="%2232248281%22">32248281)</searchLink><br />Microb Genom. 2021 Nov;7(11):. (PMID: <searchLink fieldCode="PM" term="%2234739369%22">34739369)</searchLink><br />J Appl Microbiol. 2022 Aug;133(2):1078-1088. (PMID: <searchLink fieldCode="PM" term="%2235611609%22">35611609)</searchLink><br />Int J Biol Macromol. 2024 Oct;277(Pt 4):134583. (PMID: <searchLink fieldCode="PM" term="%2239122074%22">39122074)</searchLink><br />Pest Manag Sci. 2024 Feb;80(2):724-733. (PMID: <searchLink fieldCode="PM" term="%2237774135%22">37774135)</searchLink><br />Nat Commun. 2020 May 19;11(1):2500. (PMID: <searchLink fieldCode="PM" term="%2232427907%22">32427907)</searchLink><br />Front Microbiol. 2018 Aug 17;9:1946. 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(PMID: <searchLink fieldCode="PM" term="%2232651608%22">32651608)</searchLink> – Name: SubjectMinor Label: Contributed Indexing Group: Data: <i>Keywords: </i>Peribacillus frigoritolerans; antibiotic resistance; genome analysis; identification; microbiological characterization; virulence potential – Name: NumberCAS Label: Substance Nomenclature Group: ID Data: 0 (RNA, Ribosomal, 16S)<br />0 (Anti-Bacterial Agents)<br />0 (Virulence Factors) – Name: DateEntry Label: Entry Date(s) Group: Date Data: <i>Date Created: </i>20260715 <i>Date Completed: </i>20260807 <i>Latest Revision: </i>20260923 – Name: DateUpdate Label: Update Code Group: Date Data: 20260923 – Name: PubmedCentralID Label: PubMed Central ID Group: ID Data: PMC13436373 – Name: DOI Label: DOI Group: ID Data: 10.1128/spectrum.00245-26 – Name: AN Label: PMID Group: ID Data: 42454910 |
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| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1128/spectrum.00245-26 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: e0024526 Subjects: – SubjectFull: RNA, Ribosomal, 16S genetics Type: general – SubjectFull: Anti-Bacterial Agents pharmacology Type: general – SubjectFull: Virulence Factors genetics Type: general – SubjectFull: Biofilms growth & development Type: general – SubjectFull: Humans Type: general – SubjectFull: Whole Genome Sequencing Type: general – SubjectFull: Virulence Type: general – SubjectFull: Phylogeny Type: general – SubjectFull: Microbial Sensitivity Tests Type: general – SubjectFull: Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Type: general – SubjectFull: Drug Resistance, Bacterial Type: general – SubjectFull: Genome, Bacterial Type: general – SubjectFull: Bacillaceae genetics Type: general – SubjectFull: Bacillaceae isolation & purification Type: general – SubjectFull: Bacillaceae classification Type: general – SubjectFull: Bacillaceae drug effects Type: general – SubjectFull: Gram-Positive Bacterial Infections microbiology Type: general Titles: – TitleFull: Identification and in-depth characterization of clinical isolates of Peribacillus frigoritolerans. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Calvigioni M – PersonEntity: Name: NameFull: Rossi V – PersonEntity: Name: NameFull: Celandroni F – PersonEntity: Name: NameFull: Barnini S – PersonEntity: Name: NameFull: Lupetti A – PersonEntity: Name: NameFull: Mazzantini D – PersonEntity: Name: NameFull: Ghelardi E IsPartOfRelationships: – BibEntity: Dates: – D: 04 M: 08 Text: 2026 Aug 04 Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 2165-0497 Numbering: – Type: volume Value: 14 – Type: issue Value: 8 Titles: – TitleFull: Microbiology spectrum Type: main |
| ResultId | 1 |