Academic Journal
Recombination, mobile genetic elements, and genetic transfer contribute to the adaptation of Streptococcus uberis causing mastitis.
| Title: | Recombination, mobile genetic elements, and genetic transfer contribute to the adaptation of Streptococcus uberis causing mastitis. |
|---|---|
| Authors: | Srithanasuwan A; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands.; School of Veterinary Medicine, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai, 50100, Thailand., Zou Y; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands., Zadoks RN; Sydney School of Veterinary Science, Faculty of Science, University of Sydney, Camden, NSW, 2570, Australia., Suriyasathaporn W; School of Veterinary Medicine, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai, 50100, Thailand. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp.; Research Center of Producing and Development of Products and Innovations for Animal Health and Production, Chiang Mai University, Chiang Mai, 50100, Thailand. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp.; Cambodia Campus, Asian Satellite Campuses Institute, Nagoya University, Nagoya, 464-8601, Japan. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp., Schukken YH; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands. ynte.schukken@wur.nl.; GD Animal Health, PO Box 9, 7400 AA, Deventer, The Netherlands. ynte.schukken@wur.nl.; Department of Population Health Sciences, Utrecht University, 3584 CL, Utrecht, The Netherlands. ynte.schukken@wur.nl. |
| Source: | Veterinary research [Vet Res] 2026 Jul 07; Vol. 57 (1). Date of Electronic Publication: 2026 Jul 07. |
| Publication Type: | Journal Article |
| Language: | English |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 9309551 Publication Model: Electronic Cited Medium: Internet ISSN: 1297-9716 (Electronic) Linking ISSN: 09284249 NLM ISO Abbreviation: Vet Res Subsets: MEDLINE |
| Imprint Name(s): | Publication: 2011- : London : BioMed Central Original Publication: Paris : Editions Scientifiques Elsevier ; INRA, c1993- |
| MeSH Terms: | Streptococcus*/genetics , Streptococcus*/physiology , Mastitis, Bovine*/microbiology , Streptococcal Infections*/veterinary , Streptococcal Infections*/microbiology , Interspersed Repetitive Sequences* , Recombination, Genetic* , Gene Transfer, Horizontal*, Adaptation, Physiological/genetics ; Animals ; Cattle ; Genome, Bacterial ; Female ; Thailand |
| Abstract: | Streptococcus uberis is a major cause of bovine mastitis. However, the genomic mechanisms that facilitate adaptation of the pathogen within different host-associated environment or selection pressures remain poorly understood. This study analyzed whole-genome sequence data from three Thai dairy herds to investigate the contributions of recombination and mobile genetic elements (MGEs) to S. uberis evolution and adaptation. Among the 138 S. uberis genomes, 42 core genome sequence types (cgSTs) were identified, along with frequent detection of MGEs such as plasmid-associated genes (81.1% of isolates), prophages (67.4% of isolates), and insertion sequences (26.1% of isolates). The isolates from farm A exhibited the longest recombined fragment size, but with extremely low recombination frequency and recombination-to-mutation ratio. By contrast, the isolates from farm B, which had the highest prevalence of antimicrobial resistance (AMR) gene, showed a high recombination-to-mutation ratio (R/θ = 4.42) and more frequently contained MGEs associated with AMR genes. Finally, isolates from farm C shared a single core genome and AMR profile but harbored diverse prophages. Several prophages shared high sequence similarity (>99%) with phages infecting other bacterial genera, suggesting that ecological overlap between bacterial species may facilitate cross-genus genetic exchange, highlighting the influence of microbial ecology on the evolution of S. uberis. Collectively, our results illustrate the variety of mechanisms and genetic elements that contribute to the adaptive evolution of S. uberis in dairy farming environments. (© 2026. The Author(s).) |
| Competing Interests: | Declarations. Ethics approval and consent to participate: All S. uberis genome sequences used in this study were derived from a previous study approved by the Chiang Mai University Animal Care and Use Committee (Ref. no. S26/2562). No new animal sampling was conducted. Consent for publication: Not applicable. Competing interests: The authors declare no competing interests. |
| References: | Genome Res. 2018 Sep;28(9):1395-1404. (PMID: 30049790) Ir Vet J. 2005 Jun 01;58(6):333-7. (PMID: 21851671) Sci Rep. 2021 Nov 24;11(1):22859. (PMID: 34819576) Anim Reprod Sci. 2017 Oct;185:109-117. (PMID: 28869109) J Med Microbiol. 2024 Oct;73(10):. (PMID: 39412238) Mob Genet Elements. 2011 May;1(1):55-65. (PMID: 22016845) BMC Vet Res. 2022 Jul 7;18(1):264. (PMID: 35799261) Sci Rep. 2021 Feb 4;11(1):3046. (PMID: 33542314) Antimicrob Agents Chemother. 2015 Nov 23;60(2):1164-6. (PMID: 26596938) Wellcome Open Res. 2018 Sep 24;3:124. (PMID: 30345391) Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32-6. (PMID: 16381877) Microb Genom. 2025 Jul;11(7):. (PMID: 40709905) Nat Commun. 2024 Apr 24;15(1):3477. (PMID: 38658529) Front Microbiol. 2022 Jan 06;12:773284. (PMID: 35069478) Animals (Basel). 2022 Nov 25;12(23):. (PMID: 36496808) Viruses. 2016 Mar 01;8(3):66. (PMID: 26938550) J Dairy Sci. 2025 Sep;108(9):10173-10185. (PMID: 40645489) Asian-Australas J Anim Sci. 2012 Sep;25(9):1322-8. (PMID: 25049697) BMC Genomics. 2013 Dec 27;14:920. (PMID: 24369756) mBio. 2025 Mar 12;16(3):e0285224. (PMID: 39976435) PLoS One. 2025 Aug 18;20(8):e0330304. (PMID: 40824964) J Dairy Sci. 2013 Feb;96(2):962-70. (PMID: 23200465) J Dairy Sci. 2020 Apr;103(4):3565-3576. (PMID: 32037160) BMC Vet Res. 2021 Oct 7;17(1):321. (PMID: 34620161) PLoS One. 2007 Mar 21;2(3):e315. (PMID: 17375201) Sci Rep. 2024 Feb 2;14(1):2745. (PMID: 38302507) FEMS Microbes. 2024 Sep 09;5:xtae027. (PMID: 39391373) Microb Genom. 2016 Apr 29;2(4):e000056. (PMID: 28348851) Mol Biol Evol. 2006 Feb;23(2):254-67. (PMID: 16221896) Int J Food Microbiol. 2022 Oct 2;378:109821. (PMID: 35816956) Animals (Basel). 2022 Sep 07;12(18):. (PMID: 36139187) J Antimicrob Chemother. 2021 Jan 1;76(1):101-109. (PMID: 33009809) Microb Genom. 2024 Jul;10(7):. (PMID: 39017043) J Dairy Sci. 1996 Jan;79(1):62-70. (PMID: 8675783) PLoS One. 2025 Jun 17;20(6):e0324920. (PMID: 40526704) Virology. 2016 Sep;496:42-50. (PMID: 27254594) J Dairy Sci. 2022 Feb;105(2):1504-1518. (PMID: 34955276) Front Microbiol. 2020 Aug 31;11:1993. (PMID: 32983017) Vet Microbiol. 2025 Jan;300:110319. (PMID: 39637769) Antibiotics (Basel). 2024 Apr 25;13(5):. (PMID: 38786118) Nucleic Acids Res. 2023 Jul 5;51(W1):W443-W450. (PMID: 37194694) Antibiotics (Basel). 2025 Mar 12;14(3):. (PMID: 40149107) Int J Mol Sci. 2024 Jul 26;25(15):. (PMID: 39125755) Microb Genom. 2021 Sep;7(9):. (PMID: 34486971) Nucleic Acids Res. 2019 Jul 2;47(W1):W74-W80. (PMID: 31114893) Clin Microbiol Rev. 2018 Aug 1;31(4):. (PMID: 30068738) Microb Genom. 2024 Oct;10(10):. (PMID: 39418095) Antibiotics (Basel). 2026 Jan 01;15(1):. (PMID: 41594068) BMC Microbiol. 2019 Jan 28;19(1):24. (PMID: 30691408) Appl Environ Microbiol. 2010 Dec;76(24):7957-65. (PMID: 20952646) PLoS Comput Biol. 2015 Feb 12;11(2):e1004041. (PMID: 25675341) Front Genet. 2015 Jun 15;6:214. (PMID: 26124774) Chemosphere. 2024 Dec;369:143808. (PMID: 39608649) J Dairy Sci. 2016 Dec;99(12):9864-9874. (PMID: 27743665) Res Vet Sci. 2023 Nov;164:105032. (PMID: 37844492) Bioinformatics. 2024 Jun 3;40(6):. (PMID: 38870520) |
| Contributed Indexing: | Keywords: Streptococcus uberis; antimicrobial resistance; mobile genetic elements; prophage; recombinant event |
| SCR Organism: | Streptococcus uberis |
| Entry Date(s): | Date Created: 20260708 Date Completed: 20260708 Latest Revision: 20260813 |
| Update Code: | 20260814 |
| PubMed Central ID: | PMC13343983 |
| DOI: | 10.1186/s13567-026-01795-x |
| PMID: | 42415201 |
| Database: | MEDLINE |
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| Header | DbId: cmedm DbLabel: MEDLINE An: 42415201 AccessLevel: 3 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Recombination, mobile genetic elements, and genetic transfer contribute to the adaptation of Streptococcus uberis causing mastitis. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Srithanasuwan+A%22">Srithanasuwan A</searchLink>; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands.; School of Veterinary Medicine, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai, 50100, Thailand.<br /><searchLink fieldCode="AU" term="%22Zou+Y%22">Zou Y</searchLink>; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Zadoks+RN%22">Zadoks RN</searchLink>; Sydney School of Veterinary Science, Faculty of Science, University of Sydney, Camden, NSW, 2570, Australia.<br /><searchLink fieldCode="AU" term="%22Suriyasathaporn+W%22">Suriyasathaporn W</searchLink>; School of Veterinary Medicine, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai, 50100, Thailand. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp.; Research Center of Producing and Development of Products and Innovations for Animal Health and Production, Chiang Mai University, Chiang Mai, 50100, Thailand. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp.; Cambodia Campus, Asian Satellite Campuses Institute, Nagoya University, Nagoya, 464-8601, Japan. suriyasathaporn.witaya.y3@f.mail.nagoya-u.ac.jp.<br /><searchLink fieldCode="AU" term="%22Schukken+YH%22">Schukken YH</searchLink>; Infectious Disease Epidemiology, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands. ynte.schukken@wur.nl.; GD Animal Health, PO Box 9, 7400 AA, Deventer, The Netherlands. ynte.schukken@wur.nl.; Department of Population Health Sciences, Utrecht University, 3584 CL, Utrecht, The Netherlands. ynte.schukken@wur.nl. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%229309551%22">Veterinary research</searchLink> [Vet Res] 2026 Jul 07; Vol. 57 (1). <i>Date of Electronic Publication: </i>2026 Jul 07. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: Language Label: Language Group: Lang Data: English – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>9309551 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1297-9716 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2209284249%22">09284249 </searchLink><i>NLM ISO Abbreviation: </i>Vet Res <i>Subsets: </i>MEDLINE – Name: PublisherInfo Label: Imprint Name(s) Group: PubInfo Data: <i>Publication</i>: 2011- : London : BioMed Central<br /><i>Original Publication</i>: Paris : Editions Scientifiques Elsevier ; INRA, c1993- – Name: SubjectMESH Label: MeSH Terms Group: Su Data: <searchLink fieldCode="MM" term="%22Streptococcus%22">Streptococcus*</searchLink>/<searchLink fieldCode="MM" term="%22Streptococcus+genetics%22">genetics</searchLink> <br /><searchLink fieldCode="MM" term="%22Streptococcus%22">Streptococcus*</searchLink>/<searchLink fieldCode="MM" term="%22Streptococcus+physiology%22">physiology</searchLink> <br /><searchLink fieldCode="MM" term="%22Mastitis%2C+Bovine%22">Mastitis, Bovine*</searchLink>/<searchLink fieldCode="MM" term="%22Mastitis%2C+Bovine+microbiology%22">microbiology</searchLink> <br /><searchLink fieldCode="MM" term="%22Streptococcal+Infections%22">Streptococcal Infections*</searchLink>/<searchLink fieldCode="MM" term="%22Streptococcal+Infections+veterinary%22">veterinary</searchLink> <br /><searchLink fieldCode="MM" term="%22Streptococcal+Infections%22">Streptococcal Infections*</searchLink>/<searchLink fieldCode="MM" term="%22Streptococcal+Infections+microbiology%22">microbiology</searchLink> <br /><searchLink fieldCode="MM" term="%22Interspersed+Repetitive+Sequences%22">Interspersed Repetitive Sequences*</searchLink> <br /><searchLink fieldCode="MM" term="%22Recombination%2C+Genetic%22">Recombination, Genetic*</searchLink> <br /><searchLink fieldCode="MM" term="%22Gene+Transfer%2C+Horizontal%22">Gene Transfer, Horizontal*</searchLink><br /><searchLink fieldCode="MH" term="%22Adaptation%2C+Physiological%22">Adaptation, Physiological</searchLink>/<searchLink fieldCode="MH" term="%22Adaptation%2C+Physiological+genetics%22">genetics</searchLink> ; <searchLink fieldCode="MH" term="%22Animals%22">Animals</searchLink> ; <searchLink fieldCode="MH" term="%22Cattle%22">Cattle</searchLink> ; <searchLink fieldCode="MH" term="%22Genome%2C+Bacterial%22">Genome, Bacterial</searchLink> ; <searchLink fieldCode="MH" term="%22Female%22">Female</searchLink> ; <searchLink fieldCode="MH" term="%22Thailand%22">Thailand</searchLink> – Name: Abstract Label: Abstract Group: Ab Data: Streptococcus uberis is a major cause of bovine mastitis. However, the genomic mechanisms that facilitate adaptation of the pathogen within different host-associated environment or selection pressures remain poorly understood. This study analyzed whole-genome sequence data from three Thai dairy herds to investigate the contributions of recombination and mobile genetic elements (MGEs) to S. uberis evolution and adaptation. Among the 138 S. uberis genomes, 42 core genome sequence types (cgSTs) were identified, along with frequent detection of MGEs such as plasmid-associated genes (81.1% of isolates), prophages (67.4% of isolates), and insertion sequences (26.1% of isolates). The isolates from farm A exhibited the longest recombined fragment size, but with extremely low recombination frequency and recombination-to-mutation ratio. By contrast, the isolates from farm B, which had the highest prevalence of antimicrobial resistance (AMR) gene, showed a high recombination-to-mutation ratio (R/θ = 4.42) and more frequently contained MGEs associated with AMR genes. Finally, isolates from farm C shared a single core genome and AMR profile but harbored diverse prophages. Several prophages shared high sequence similarity (&gt;99%) with phages infecting other bacterial genera, suggesting that ecological overlap between bacterial species may facilitate cross-genus genetic exchange, highlighting the influence of microbial ecology on the evolution of S. uberis. Collectively, our results illustrate the variety of mechanisms and genetic elements that contribute to the adaptive evolution of S. uberis in dairy farming environments.<br /> (© 2026. The Author(s).) – Name: Abstract Label: Competing Interests Group: Ab Data: Declarations. Ethics approval and consent to participate: All S. uberis genome sequences used in this study were derived from a previous study approved by the Chiang Mai University Animal Care and Use Committee (Ref. no. S26/2562). No new animal sampling was conducted. Consent for publication: Not applicable. Competing interests: The authors declare no competing interests. – Name: Ref Label: References Group: RefInfo Data: Genome Res. 2018 Sep;28(9):1395-1404. (PMID: <searchLink fieldCode="PM" term="%2230049790%22">30049790)</searchLink><br />Ir Vet J. 2005 Jun 01;58(6):333-7. (PMID: <searchLink fieldCode="PM" term="%2221851671%22">21851671)</searchLink><br />Sci Rep. 2021 Nov 24;11(1):22859. (PMID: <searchLink fieldCode="PM" term="%2234819576%22">34819576)</searchLink><br />Anim Reprod Sci. 2017 Oct;185:109-117. (PMID: <searchLink fieldCode="PM" term="%2228869109%22">28869109)</searchLink><br />J Med Microbiol. 2024 Oct;73(10):. (PMID: <searchLink fieldCode="PM" term="%2239412238%22">39412238)</searchLink><br />Mob Genet Elements. 2011 May;1(1):55-65. (PMID: <searchLink fieldCode="PM" term="%2222016845%22">22016845)</searchLink><br />BMC Vet Res. 2022 Jul 7;18(1):264. (PMID: <searchLink fieldCode="PM" term="%2235799261%22">35799261)</searchLink><br />Sci Rep. 2021 Feb 4;11(1):3046. (PMID: <searchLink fieldCode="PM" term="%2233542314%22">33542314)</searchLink><br />Antimicrob Agents Chemother. 2015 Nov 23;60(2):1164-6. (PMID: <searchLink fieldCode="PM" term="%2226596938%22">26596938)</searchLink><br />Wellcome Open Res. 2018 Sep 24;3:124. (PMID: <searchLink fieldCode="PM" term="%2230345391%22">30345391)</searchLink><br />Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32-6. (PMID: <searchLink fieldCode="PM" term="%2216381877%22">16381877)</searchLink><br />Microb Genom. 2025 Jul;11(7):. (PMID: <searchLink fieldCode="PM" term="%2240709905%22">40709905)</searchLink><br />Nat Commun. 2024 Apr 24;15(1):3477. 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(PMID: <searchLink fieldCode="PM" term="%2238870520%22">38870520)</searchLink> – Name: SubjectMinor Label: Contributed Indexing Group: Data: <i>Keywords: </i>Streptococcus uberis; antimicrobial resistance; mobile genetic elements; prophage; recombinant event – Name: SubjectOther Label: SCR Organism Group: Su Data: Streptococcus uberis – Name: DateEntry Label: Entry Date(s) Group: Date Data: <i>Date Created: </i>20260708 <i>Date Completed: </i>20260708 <i>Latest Revision: </i>20260813 – Name: DateUpdate Label: Update Code Group: Date Data: 20260814 – Name: PubmedCentralID Label: PubMed Central ID Group: ID Data: PMC13343983 – Name: DOI Label: DOI Group: ID Data: 10.1186/s13567-026-01795-x – Name: AN Label: PMID Group: ID Data: 42415201 |
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| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1186/s13567-026-01795-x Languages: – Code: eng Text: English Subjects: – SubjectFull: Adaptation, Physiological genetics Type: general – SubjectFull: Animals Type: general – SubjectFull: Cattle Type: general – SubjectFull: Genome, Bacterial Type: general – SubjectFull: Female Type: general – SubjectFull: Thailand Type: general – SubjectFull: Streptococcus genetics Type: general – SubjectFull: Streptococcus physiology Type: general – SubjectFull: Mastitis, Bovine microbiology Type: general – SubjectFull: Streptococcal Infections veterinary Type: general – SubjectFull: Streptococcal Infections microbiology Type: general – SubjectFull: Interspersed Repetitive Sequences Type: general – SubjectFull: Recombination, Genetic Type: general – SubjectFull: Gene Transfer, Horizontal Type: general Titles: – TitleFull: Recombination, mobile genetic elements, and genetic transfer contribute to the adaptation of Streptococcus uberis causing mastitis. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Srithanasuwan A – PersonEntity: Name: NameFull: Zou Y – PersonEntity: Name: NameFull: Zadoks RN – PersonEntity: Name: NameFull: Suriyasathaporn W – PersonEntity: Name: NameFull: Schukken YH IsPartOfRelationships: – BibEntity: Dates: – D: 07 M: 07 Text: 2026 Jul 07 Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 1297-9716 Numbering: – Type: volume Value: 57 – Type: issue Value: 1 Titles: – TitleFull: Veterinary research Type: main |
| ResultId | 1 |