Report from the BV-BRC, CDC, NCBI, and NIAID Viral Sub-Species Classification Workshop.
| Τίτλος: | Report from the BV-BRC, CDC, NCBI, and NIAID Viral Sub-Species Classification Workshop. |
|---|---|
| Συγγραφείς: | Lefkowitz EJ; Department of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA., Rutvisuttinunt W; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, USA., Brister JR; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA., Capria A; J. Craig Venter Institute, La Jolla, California, USA., Click ES; National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Caravas J; National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Hatcher E; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA., MacCannell D; National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Rota P; National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Singh I; J. Craig Venter Institute, La Jolla, California, USA., Stewart L; J. Craig Venter Institute, La Jolla, California, USA., St John A; National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Zmasek C; J. Craig Venter Institute, La Jolla, California, USA., Brown LL; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, USA. |
| Πηγή: | Journal of virology [J Virol] 2026 Jul 21; Vol. 100 (7), pp. e0021026. Date of Electronic Publication: 2026 Jun 12. |
| Τύπος έκδοσης: | Conference Proceedings |
| Γλώσσα: | English |
| Στοιχεία περιοδικού: | Publisher: American Society For Microbiology Country of Publication: United States NLM ID: 0113724 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5514 (Electronic) Linking ISSN: 0022538X NLM ISO Abbreviation: J Virol Subsets: MEDLINE |
| Imprint Name(s): | Publication: Washington Dc : American Society For Microbiology Original Publication: Baltimore, American Society for Microbiology. |
| Ιατρικοί όροι (MeSH): | Viruses*/classification , Viruses*/genetics, Virus Diseases/virology ; Computational Biology ; United States ; National Institute of Allergy and Infectious Diseases (U.S.) ; Centers for Disease Control and Prevention, U.S. ; Humans ; Terminology as Topic ; Phylogeny ; Animals ; Genome, Viral |
| Περίληψη: | The Viral Sub-Species Classification Workshop, held from 8 to 10 April 2024 at the National Institute of Allergy and Infectious Diseases (NIAID), addressed scientific and technological challenges in the classification of viruses below the level of species. Co-organized by the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), the Centers for Disease Control and Prevention (CDC), the National Center for Biotechnology Information (NCBI), and NIAID, it convened experts in virology, bioinformatics, and public health to discuss topics including tracking the real-time evolution of virus lineages; developing useful and non-stigmatizing nomenclature; supporting global coordination for the development of diagnostics, vaccines, treatments, and public health strategies; and ensuring accurate and timely updates of information. The workshop emphasized the role of a formal viral taxonomy and characterization below the species level, such as clades, genotypes, and lineages. Discussions included systems such as the variants of concern short nomenclature and Pango lineages for respiratory viruses, alongside similar systems for other viral pathogens. Presentations highlighted real-time genomic tracking for timely vaccine updates and addressed challenges in nomenclature systems. Technological advancements and community collaboration were deemed vital. Discussions included high-level descriptions of systems that could be used to track and classify evolving viral lineages; name them using dynamic nomenclature systems; and integrate pathogenic, antigenic, and other phenotypic data with genetic information. |
| Competing Interests: | The authors declare no conflict of interest. |
| References: | mSphere. 2016 Dec 14;1(6):. (PMID: 27981236) Emerg Infect Dis. 2008 Jul;14(7):e1. (PMID: 18598616) Nat Microbiol. 2021 Mar;6(3):415. (PMID: 33514928) Nat Genet. 2021 Jun;53(6):809-816. (PMID: 33972780) Nat Microbiol. 2020 Nov;5(11):1403-1407. (PMID: 32669681) Avian Dis. 2010 Mar;54(1 Suppl):220-3. (PMID: 20521635) Cold Spring Harb Perspect Med. 2021 Mar 1;11(3):. (PMID: 31988203) Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. (PMID: 36350631) Science. 2023 Oct 6;382(6666):eadj0070. (PMID: 37797027) |
| Grant Information: | HHSN75N93019C00076 National Institute of Allergy and Infectious Diseases |
| Contributed Indexing: | Keywords: genomic surveillance; nomenclature; viral sub-species classification; viral taxonomy |
| Entry Date(s): | Date Created: 20260612 Date Completed: 20260721 Latest Revision: 20260828 |
| Update Code: | 20260828 |
| PubMed Central ID: | PMC13386822 |
| DOI: | 10.1128/jvi.00210-26 |
| PMID: | 42283465 |
| Βάση Δεδομένων: | MEDLINE |
καταχωρήστε σχόλιο πρώτοι!