FtsW protein-protein interactions visualized in live Staphylococcus aureus cells by FLIM-FRET.

Bibliographic Details
Title: FtsW protein-protein interactions visualized in live Staphylococcus aureus cells by FLIM-FRET.
Authors: Meiresonne NY; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal. nmeiresonne@itqb.unl.pt., Costa SF; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal.; Single Molecule Microbiology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal., Schäper S; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal., Ferreira MJ; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal., Reed P; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal., Hensel Z; Single Molecule Microbiology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal., Fernandes F; iBB-Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal.; i4HB-Institute for Health and Bioeconomy, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal.; Bioengineering Department, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal., Pinho MG; Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Oeiras, Portugal. mgpinho@itqb.unl.pt.
Source: Nature communications [Nat Commun] 2026 May 09; Vol. 17 (1). Date of Electronic Publication: 2026 May 09.
Publication Type: Journal Article
Language: English
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Imprint Name(s): Original Publication: [London] : Nature Pub. Group
MeSH Terms: Fluorescence Resonance Energy Transfer*/methods , Staphylococcus aureus*/metabolism , Bacterial Proteins*/metabolism , Bacterial Proteins*/genetics , Membrane Proteins*/metabolism , Membrane Proteins*/genetics , Cell Cycle Proteins*/metabolism, Peptidoglycan/biosynthesis ; Peptidoglycan/metabolism ; Microscopy, Fluorescence/methods ; Penicillin-Binding Proteins/metabolism ; Cell Wall/metabolism ; Protein Binding
Abstract: The bacterial cell cycle relies on coordinated and dynamic interactions between division and peptidoglycan synthesis proteins. However, visualizing these interactions in vivo remains technically challenging. Here, we established fluorescence-lifetime imaging microscopy combined with Förster resonance energy transfer (FLIM-FRET) as a robust, spatially resolved technique to visualize protein interactions in living Staphylococcus aureus. We set up and validated the method using cytosolic and membrane-anchored control proteins, achieving FRET efficiencies of up to 40%. Using FLIM-FRET, we mapped protein interactions of the glycosyltransferase FtsW within the septal peptidoglycan-synthesizing complex. We confirmed its interaction with the cognate transpeptidase PBP1 and the regulatory protein DivIB. Notably, we found that FtsW also self-interacts, suggesting that septal peptidoglycan synthesis is performed by a complex of multimers, able to synthesize more than one glycan strand. Inhibition of peptidoglycan synthesis by directly targeting PBP1 with the beta-lactam antibiotic imipenem, but not by targeting the lipid II flippase, therefore depleting the FtsW-PBP1 substrate from the outer surface of the cell membrane, weakened FtsW-PBP1 interaction. This suggests that alterations in FtsW interactions result primarily from antibiotic-induced conformational changes or from uncoupling FtsW-PBP1 activities, resulting in the presence of uncrosslinked glycans, rather than merely from a loss of peptidoglycan synthesis activity.
(© 2026. The Author(s).)
Competing Interests: Competing interests: The authors declare no competing interests.
References: Du, S. & Lutkenhaus, J. Assembly and activation of the Escherichia coli divisome. Mol. Microbiol. 105, 177–187 (2017). (PMID: 28419603551705510.1111/mmi.13696)
Adams, D. W. & Errington, J. Bacterial cell division: assembly, maintenance and disassembly of the Z ring. Nat. Rev. Microbiol. 7, 642–653 (2009). (PMID: 1968024810.1038/nrmicro2198)
Pinho, M. G. & Foster, S. J. Cell growth and division of Staphylococcus aureus. Annu. Rev. Microbiol. 78, 293–310 (2024). (PMID: 3956595110.1146/annurev-micro-041222-125931)
Pichoff, S. & Lutkenhaus, J. Tethering the Z ring to the membrane through a conserved membrane-targeting sequence in FtsA. Mol. Microbiol. 55, 1722–1734 (2005). (PMID: 1575219610.1111/j.1365-2958.2005.04522.x)
Fujita, J. et al. Crystal structure of FtsA from Staphylococcus aureus. FEBS Lett. 588, 1879–1885 (2014). (PMID: 2474668710.1016/j.febslet.2014.04.008)
Bisson-Filho, A. W. et al. Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division. Science 355, 739–743 (2017). (PMID: 28209898548565010.1126/science.aak9973)
Yang, X. et al. GTPase activity-coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell wall synthesis. Science 355, 744–747 (2017). (PMID: 28209899585177510.1126/science.aak9995)
Gamba, P., Veening, J. W., Saunders, N. J., Hamoen, L. W. & Daniel, R. A. Two-step assembly dynamics of the Bacillus subtilis divisome. J. Bacteriol. 191, 4186–4194 (2009). (PMID: 19429628269851010.1128/JB.01758-08)
Tinajero-Trejo, M. et al. Control of morphogenesis during the Staphylococcus aureus cell cycle. Sci. Adv. 11, eadr5011 (2025). (PMID: 402153011198841110.1126/sciadv.adr5011)
Monteiro, J. M. et al. Peptidoglycan synthesis drives an FtsZ-treadmilling-independent step of cytokinesis. Nature 554, 528–532 (2018). (PMID: 29443967582376510.1038/nature25506)
Aarsman, M. E. G. et al. Maturation of the Escherichia coli divisome occurs in two steps. Mol. Microbiol. 55, 1631–1645 (2005). (PMID: 1575218910.1111/j.1365-2958.2005.04502.x)
Reichmann, N. T. et al. SEDS–bPBP pairs direct lateral and septal peptidoglycan synthesis in Staphylococcus aureus. Nat. Microbiol. 4, 1368–1377 (2019). (PMID: 3108630910.1038/s41564-019-0437-2)
Taguchi, A. et al. FtsW is a peptidoglycan polymerase that is functional only in complex with its cognate penicillin-binding protein. Nat. Microbiol. 4, 587–594 (2019). (PMID: 30692671643070710.1038/s41564-018-0345-x)
Pereira, S. F. F., Henriques, A. O., Pinho, M. G., de Lencastre, H. & Tomasz, A. Role of PBP1 in cell division of Staphylococcus aureus. J. Bacteriol. 189, 3525–3531 (2007). (PMID: 17307860185588610.1128/JB.00044-07)
Schäper, S. et al. Cell constriction requires processive septal peptidoglycan synthase movement independent of FtsZ treadmilling in Staphylococcus aureus. Nat. Microbiol. 9, 1049–1063 (2024). (PMID: 384809001099484610.1038/s41564-024-01629-6)
Monteiro, J. M. et al. Cell shape dynamics during the staphylococcal cell cycle. Nat. Commun. 6, 8055 (2015). (PMID: 26278781455733910.1038/ncomms9055)
Pazos, M. et al. Z-ring membrane anchors associate with cell wall synthases to initiate bacterial cell division. Nat. Commun. 9, 5090 (2018). (PMID: 30504892626947710.1038/s41467-018-07559-2)
Söderström, B., Chan, H., Shilling, P. J., Skoglund, U. & Daley, D. O. Spatial separation of FtsZ and FtsN during cell division. Mol. Microbiol. 107, 387–401 (2018). (PMID: 2919343210.1111/mmi.13888)
Lyu, Z. et al. FtsN maintains active septal cell wall synthesis by forming a processive complex with the septum-specific peptidoglycan synthases in Escherichia coli. Nat. Commun. 13, 5751 (2022). (PMID: 36180460952531210.1038/s41467-022-33404-8)
Suhling, K., French, P. M. W. & Phillips, D. Time-resolved fluorescence microscopy. Photochem. Photobiol. Sci. 4, 13–22 (2005). (PMID: 1561668710.1039/b412924p)
Gadella, T. W. J. et al. FRET and FLIM Techniques. (Elsevier, 2009).
Alexeeva, S., Gadella, T. W. J., Verheul, J., Verhoeven, G. S. & den Blaauwen, T. Direct interactions of early and late assembling division proteins in Escherichia coli cells resolved by FRET. Mol. Microbiol. 77, 384–398 (2010). (PMID: 2049733310.1111/j.1365-2958.2010.07211.x)
Meiresonne, N. Y., van der Ploeg, R., Hink, M. A. & den Blaauwen, T. Activity-related conformational changes in D,D-carboxypeptidases revealed by in vivo periplasmic Förster resonance energy transfer assay in Escherichia coli. mBio 8, e01089-17 (2017). (PMID: 28900026559634210.1128/mBio.01089-17)
Meiresonne, N. Y. & den Blaauwen, T. The in vitro non-tetramerizing ZapA I83E mutant is unable to recruit ZapB to the division plane in vivo in Escherichia coli. Int. J. Mol. Sci. 21, 3130 (2020). (PMID: 32365468724661210.3390/ijms21093130)
Meiresonne, N. Y. et al. Superfolder mTurquoise2 ox optimized for the bacterial periplasm allows high efficiency in vivo FRET of cell division antibiotic targets. Mol. Microbiol. 111, 1025–1038 (2019). (PMID: 30648295685065010.1111/mmi.14206)
Manko, H. et al. PvdL orchestrates the assembly of the non-ribosomal peptide synthetases involved in pyoverdine biosynthesis in Pseudomonas aeruginosa. Int. J. Mol. Sci. 25, 6013 (2024). (PMID: 388922001117279010.3390/ijms25116013)
Manko, H. et al. FLIM-FRET measurements of protein–protein interactions in live bacteria. J. Vis.Exp.162, 61602 (2020).
Detert Oude Weme, R. G. J. et al. analysis for the identification of optimal FRET pairs in Bacillus subtilis using a prototype MEM-FLIM system. PLoS One 10, e0123239 (2015). (PMID: 25886351440144510.1371/journal.pone.0123239)
Mastop, M. et al. Characterization of a spectrally diverse set of fluorescent proteins as FRET acceptors for mTurquoise2. Sci. Rep. 7, 11999 (2017). (PMID: 28931898560732910.1038/s41598-017-12212-x)
Forsyth, R. A. et al. A genome-wide strategy for the identification of essential genes in Staphylococcus aureus. Mol. Microbiol. 43, 1387–1400 (2002). (PMID: 1195289310.1046/j.1365-2958.2002.02832.x)
Sillen, A. & Engelborghs, Y. The correct use of “average” fluorescence parameters. Photochem. Photobiol. 67, 475–486 (1998). (PMID: 10.1111/j.1751-1097.1998.tb09082.x)
Clegg, R. M. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 211, 353–388 (1992). (PMID: 140631510.1016/0076-6879(92)11020-J)
Meiresonne, N., Consoli, E., Mertens, L. & den Blaauwen, T. Detection of in vivo protein interactions in all bacterial compartments by Förster resonance energy transfer with the superfolder mTurquoise2 ox–mNeonGreen FRET pair. Bio-Protoc. 9, e3448 (2019). (PMID: 336549437853951)
Karimova, G., Pidoux, J., Ullmann, A. & Ladant, D. A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc. Natl. Acad. Sci. USA. 95, 5752–5756 (1998). (PMID: 95769562045110.1073/pnas.95.10.5752)
Karimova, G., Dautin, N. & Ladant, D. Interaction network among Escherichia coli membrane proteins involved in cell division as revealed by bacterial two-hybrid analysis. J. Bacteriol. 187, 2233–2243 (2005). (PMID: 15774864106521610.1128/JB.187.7.2233-2243.2005)
Käshammer, L. et al. Cryo-EM structure of the bacterial divisome core complex and antibiotic target FtsWIQBL. Nat. Microbiol. 8, 1149–1159 (2023). (PMID: 37127704761461210.1038/s41564-023-01368-0)
D’Ulisse, V., Fagioli, M., Ghelardini, P. & Paolozzi, L. Three functional subdomains of the Escherichia coli FtsQ protein are involved in its interaction with the other division proteins. Microbiology 153, 124–138 (2007). (PMID: 1718554110.1099/mic.0.2006/000265-0)
Wadsworth, K. D., Rowland, S. L., Harry, E. J. & King, G. F. The divisomal protein DivIB contains multiple epitopes that mediate its recruitment to incipient division sites. Mol. Microbiol. 67, 1143–1155 (2008). (PMID: 1820853010.1111/j.1365-2958.2008.06114.x)
Maggi, S. et al. Division protein interaction web: identification of a phylogenetically conserved common interactome between Streptococcus pneumoniae and Escherichia coli. Microbiology 154, 3042–3052 (2008). (PMID: 1883231010.1099/mic.0.2008/018697-0)
Juillot, D. et al. Transient inhibition of cell division in competent pneumococcal cells results from deceleration of the septal peptidoglycan complex. Nat. Commun. 16, 5666 (2025). (PMID: 405955801221488710.1038/s41467-025-60600-z)
Park, K. T., Pichoff, S., Du, S. & Lutkenhaus, J. FtsA acts through FtsW to promote cell wall synthesis during cell division in Escherichia coli. Proc. Natl. Acad. Sci. USA. 118, e2107210118 (2021). (PMID: 34453005853632110.1073/pnas.2107210118)
Liu, B., Persons, L., Lee, L. & de Boer, P. A. J. Roles for both FtsA and the FtsBLQ subcomplex in FtsN-stimulated cell constriction in Escherichia coli. Mol. Microbiol. 95, 945–970 (2015). (PMID: 25496160442828210.1111/mmi.12906)
Steele, V. R., Bottomley, A. L., Garcia-Lara, J., Kasturiarachchi, J. & Foster, S. J. Multiple essential roles for EzrA in cell division of Staphylococcus aureus. Mol. Microbiol. 80, 542–555 (2011). (PMID: 2140173410.1111/j.1365-2958.2011.07591.x)
Bertsche, U., Breukink, E., Kast, T. & Vollmer, W. In vitro murein (peptidoglycan) synthesis by dimers of the bifunctional transglycosylase-transpeptidase PBP1B from Escherichia coli. J. Biol. Chem. 280, 38096–38101 (2005). (PMID: 1615499810.1074/jbc.M508646200)
Bon, C. G. et al. Structural and kinetic analysis of the monofunctional Staphylococcus aureus PBP1. J. Struct. Biol. 216, 108086 (2024). (PMID: 3852771110.1016/j.jsb.2024.108086)
Fraipont, C. et al. The integral membrane FtsW protein and peptidoglycan synthase PBP3 form a subcomplex in Escherichia coli. Microbiology 157, 251–259 (2011). (PMID: 2084700210.1099/mic.0.040071-0)
Daniel, R. A., Harry, E. J. & Errington, J. Role of penicillin-binding protein PBP2B in assembly and functioning of the division machinery of Bacillus subtilis. Mol. Microbiol. 35, 299–311 (2000). (PMID: 1065209110.1046/j.1365-2958.2000.01724.x)
Choi, Y. et al. Structural insights into the FtsQ/FtsB/FtsL complex, a key component of the divisome. Sci. Rep. 8, 18061 (2018). (PMID: 30584256630548610.1038/s41598-018-36001-2)
Condon, S. G. F. et al. The FtsLB subcomplex of the bacterial divisome is a tetramer with an uninterrupted FtsL helix linking the transmembrane and periplasmic regions. J. Biol. Chem. 293, 1623–1641 (2018). (PMID: 2923389110.1074/jbc.RA117.000426)
Nguyen, H. T. V. et al. Structure of the heterotrimeric membrane protein complex FtsB-FtsL-FtsQ of the bacterial divisome. Nat. Commun. 14, 1903 (2023). (PMID: 370199341007639210.1038/s41467-023-37543-4)
Grimm, J. B. et al. A general method to fine-tune fluorophores for live-cell and in vivo imaging. Nat. Methods 14, 987–994 (2017). (PMID: 28869757562198510.1038/nmeth.4403)
Los, G. V. et al. HaloTag: a novel protein labeling technology for cell imaging and protein analysis. ACS Chem. Biol. 3, 373–382 (2008). (PMID: 1853365910.1021/cb800025k)
Padilla-Parra, S. et al. Quantitative comparison of different fluorescent protein couples for fast FRET-FLIM acquisition. Biophys. J. 97, 2368–2376 (2009). (PMID: 19843469276407210.1016/j.bpj.2009.07.044)
Lambert, T. J. FPbase: A community-editable fluorescent protein database. Nat. Methods 16, 277–278 (2019). (PMID: 3088641210.1038/s41592-019-0352-8)
Yang, Y., Bhachech, N. & Bush, K. Biochemical comparison of imipenem, meropenem and biapenem: permeability, binding to penicillin-binding proteins, and stability to hydrolysis by β-lactamases. J. Antimicrob. Chemother. 35, 75–84 (1995). (PMID: 776878510.1093/jac/35.1.75)
Kuk, A. C. Y., Hao, A. & Lee, S.-Y. Structure and mechanism of the lipid flippase MurJ. Annu. Rev. Biochem. 91, 705–729 (2022). (PMID: 353206861010883010.1146/annurev-biochem-040320-105145)
Huber, J. et al. Chemical genetic identification of peptidoglycan inhibitors potentiating carbapenem activity against methicillin-resistant Staphylococcus aureus. Chem. Biol. 16, 837–848 (2009). (PMID: 1971647410.1016/j.chembiol.2009.05.012)
Whitley, K. D. et al. Peptidoglycan synthesis drives a single population of septal cell wall synthases during division in Bacillus subtilis. Nat. Microbiol. 9, 1064–1074 (2024). (PMID: 384809011099484210.1038/s41564-024-01650-9)
Lyu, Z. et al. Third track model for coordination of septal peptidoglycan synthesis and degradation by FtsN in Escherichia coli. Nat. Microbiol. 10, 1521–1534 (2025). (PMID: 404258291303213310.1038/s41564-025-02011-w)
Höltje, J.-V. A hypothetical holoenzyme involved in the replication of the murein sacculus of Escherichia coli. Microbiology 142, 1911–1918 (1996). (PMID: 876090510.1099/13500872-142-8-1911)
Höltje, J. V. Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli. Microbiol. Mol. Biol. Rev. 62, 181–203 (1998). (PMID: 95298919891010.1128/MMBR.62.1.181-203.1998)
Monk, I. R., Shah, I. M., Xu, M., Tan, M. W. & Foster, T. J. Transforming the untransformable: application of direct transformation to manipulate genetically Staphylococcus aureus and Staphylococcus epidermidis. mBio 3, e00277-11 (2012). (PMID: 22434850331221110.1128/mBio.00277-11)
Veiga, H. & Pinho, M. G. Inactivation of the SauI type I restriction-modification system is not sufficient to generate Staphylococcus aureus strains capable of efficiently accepting foreign DNA. Appl. Environ. Microbiol. 75, 3034–3038 (2009). (PMID: 19304835268162410.1128/AEM.01862-08)
Oshida, T. & Tomasz, A. Isolation and characterization of a Tn551 autolysis mutant of Staphylococcus aureus. J. Bacteriol. 174, 4952–4959 (1992). (PMID: 132111920630810.1128/jb.174.15.4952-4959.1992)
Mertens, L. M. Y. & den Blaauwen, T. Optimising expression of the large dynamic range FRET pair mNeonGreen and superfolder mTurquoise2 ox for use in the Escherichia coli cytoplasm. Sci. Rep. 12, 17977 (2022). (PMID: 36289441960637710.1038/s41598-022-22918-2)
Lakowicz, J. R. et al. Principles of fluorescence spectroscopy, 3<sup>rd</sup> edition. (Springer, 2006).
O’Connor, D. V., Ware, W. R. & Andre, J. C. Deconvolution of fluorescence decay curves. A critical comparison of techniques. J. Phys. Chem. 83, 1333–1342 (1979). (PMID: 10.1021/j100473a019)
Reed, P. et al. Staphylococcus aureus survives with a minimal peptidoglycan synthesis machine but sacrifices virulence and antibiotic resistance. PLoS Pathog. 11, e1004891 (2015). (PMID: 25951442442392210.1371/journal.ppat.1004891)
Grant Information: ERC-2022-ADG 101096393 EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council); ERC-2017-CoG-771709 EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council)
Substance Nomenclature: 0 (Bacterial Proteins)
0 (Peptidoglycan)
0 (Membrane Proteins)
125724-13-2 (FtsW protein, Bacteria)
0 (Cell Cycle Proteins)
0 (Penicillin-Binding Proteins)
Entry Date(s): Date Created: 20260509 Date Completed: 20260717 Latest Revision: 20260726
Update Code: 20260726
PubMed Central ID: PMC13376785
DOI: 10.1038/s41467-026-72752-7
PMID: 42106333
Database: MEDLINE
Be the first to leave a comment!
You must be logged in first