Structural basis for DNA break sensing by human MRE11-RAD50-NBS1 and its regulation by telomeric factor TRF2.

Λεπτομέρειες βιβλιογραφικής εγγραφής
Τίτλος: Structural basis for DNA break sensing by human MRE11-RAD50-NBS1 and its regulation by telomeric factor TRF2.
Συγγραφείς: Fan Y; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Kuybu F; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Cui H; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Lammens K; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Chen JX; Proteomics Core Facility, Institute of Molecular Biology, Mainz, Germany., Kugler M; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Jung C; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany., Hopfner KP; Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor Lynen Straße 25, 81377, Munich, Germany. karlpeter.hopfner@lmu.de.
Πηγή: Nature communications [Nat Commun] 2025 Sep 18; Vol. 16 (1), pp. 8320. Date of Electronic Publication: 2025 Sep 18.
Τύπος έκδοσης: Journal Article
Γλώσσα: English
Στοιχεία περιοδικού: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Imprint Name(s): Original Publication: [London] : Nature Pub. Group
Ιατρικοί όροι (MeSH): MRE11 Homologue Protein*/metabolism , MRE11 Homologue Protein*/chemistry , MRE11 Homologue Protein*/genetics , MRE11 Homologue Protein*/ultrastructure , Telomeric Repeat Binding Protein 2*/metabolism , Telomeric Repeat Binding Protein 2*/chemistry , Telomeric Repeat Binding Protein 2*/genetics , Cell Cycle Proteins*/metabolism , Cell Cycle Proteins*/chemistry , Cell Cycle Proteins*/genetics , Cell Cycle Proteins*/ultrastructure , DNA-Binding Proteins*/metabolism , DNA-Binding Proteins*/chemistry , DNA-Binding Proteins*/genetics , DNA-Binding Proteins*/ultrastructure , Nuclear Proteins*/metabolism , Nuclear Proteins*/chemistry , Nuclear Proteins*/genetics , Nuclear Proteins*/ultrastructure , DNA Repair Enzymes*/metabolism , DNA Repair Enzymes*/chemistry , DNA Repair Enzymes*/genetics , DNA Repair Enzymes*/ultrastructure , DNA Breaks, Double-Stranded*, DNA/metabolism ; Acid Anhydride Hydrolases/metabolism ; Telomere/metabolism ; Ataxia Telangiectasia Mutated Proteins/metabolism ; Humans ; Cryoelectron Microscopy ; Protein Binding
Περίληψη: The MRE11-RAD50-NBS1 (MRN) complex is a central, multifunctional factor in the detection, signaling and nucleolytic processing of DNA double-strand breaks (DSBs). To clarify how human MRN binds generic and telomeric DNA ends and can separate DNA end sensing from nuclease activities, we determined cryo-electron microscopy (cryo-EM) structures of human MRN bound to DNA and to DNA and the telomere protection factor TRF2. MRN senses DSBs through a tight clamp-like sensing state with closed coiled-coil domains, but auto-inhibited MRE11 nuclease. NBS1 wraps around the MRE11 dimer, with NBS1's ATM recruitment motif sequestered by binding to the regulatory RAD50 S site, necessitating a switch in the NBS1 C helix for ATM activation. At telomeric DNA, TRF2 blocks the second S site via the iDDR motif to prevent nuclease and ATM activation. Our results provide a structural framework for DNA sensing via a gating mechanism and separation of sensing, signaling and processing activities of mammalian MRN.
(© 2025. The Author(s).)
Competing Interests: Competing interests: The authors declare no competing interests.
References: Mol Cell. 2016 Nov 3;64(3):593-606. (PMID: 27814491)
Nat Rev Mol Cell Biol. 2020 Dec;21(12):765-781. (PMID: 33077885)
J Proteome Res. 2018 Nov 2;17(11):3923-3931. (PMID: 30293428)
J Biol Chem. 1997 Aug 8;272(32):19819-26. (PMID: 9242643)
J Biol Chem. 2018 Jul 6;293(27):10524-10535. (PMID: 29599286)
Mol Syst Biol. 2019 Sep;15(9):e8994. (PMID: 31556486)
Mol Cell Biol. 2009 Oct;29(20):5552-63. (PMID: 19667071)
Anal Chem. 2003 Feb 1;75(3):663-70. (PMID: 12585499)
Annu Rev Genet. 2018 Nov 23;52:223-247. (PMID: 30208292)
Curr Opin Struct Biol. 2023 Oct;82:102651. (PMID: 37437397)
J Vis Exp. 2019 Feb 7;(144):. (PMID: 30799844)
Mol Cell Biol. 2005 Jul;25(13):5363-79. (PMID: 15964794)
Nucleic Acids Res. 2010 Jan;38(2):441-54. (PMID: 19892829)
Nat Methods. 2019 Nov;16(11):1153-1160. (PMID: 31591578)
Nucleic Acids Res. 2009 Apr;37(5):1580-8. (PMID: 19151086)
Genes Dev. 2002 Sep 1;16(17):2237-51. (PMID: 12208847)
Nat Methods. 2017 Aug;14(8):793-796. (PMID: 28671674)
Nat Rev Cancer. 2023 Feb;23(2):78-94. (PMID: 36471053)
Biochem Soc Trans. 2024 Aug 28;52(4):1551-1564. (PMID: 39109533)
Nat Struct Mol Biol. 2021 Oct;28(10):789-798. (PMID: 34556870)
Nucleic Acids Res. 2024 Jul 22;52(13):7704-7719. (PMID: 38884214)
Annu Rev Biochem. 2018 Jun 20;87:263-294. (PMID: 29709199)
Nat Commun. 2022 May 2;13(1):2374. (PMID: 35501303)
Mol Cell. 2016 Dec 1;64(5):1010. (PMID: 27912094)
Mol Cell. 2017 Mar 2;65(5):801-817.e4. (PMID: 28216226)
PLoS Genet. 2013;9(2):e1003277. (PMID: 23468639)
Annu Rev Genet. 2021 Nov 23;55:285-307. (PMID: 34813349)
Science. 2024 Aug 16;385(6710):eado3867. (PMID: 38900911)
Cell Rep. 2021 Mar 30;34(13):108906. (PMID: 33789097)
Nat Methods. 2017 Mar;14(3):290-296. (PMID: 28165473)
Mol Cell. 1998 Jun;1(7):969-79. (PMID: 9651580)
Front Genet. 2022 Jan 31;13:793884. (PMID: 35173769)
Cell. 2001 May 18;105(4):473-85. (PMID: 11371344)
Nature. 2005 Mar 31;434(7033):605-11. (PMID: 15758953)
Mol Cell. 2019 Nov 7;76(3):382-394.e6. (PMID: 31492634)
Sci Adv. 2020 Jan 08;6(2):eaay0922. (PMID: 31934630)
Mol Cell. 2018 Apr 19;70(2):358-370.e4. (PMID: 29628308)
Annu Rev Biochem. 2019 Jun 20;88:221-245. (PMID: 30917004)
J Mol Biol. 2024 Sep 1;436(17):168656. (PMID: 39237202)
Proteins. 2021 Feb;89(2):251-255. (PMID: 32875643)
Mol Cell. 2023 Jan 19;83(2):167-185.e9. (PMID: 36577401)
Nat Struct Mol Biol. 2011 Apr;18(4):423-31. (PMID: 21441914)
Cell. 1998 May 1;93(3):477-86. (PMID: 9590181)
Genes Dev. 2017 Dec 1;31(23-24):2331-2336. (PMID: 29321177)
Cell. 2000 Jun 23;101(7):789-800. (PMID: 10892749)
Immunology. 2020 Jul;160(3):233-247. (PMID: 32031242)
DNA Repair (Amst). 2003 Jul 16;2(7):795-807. (PMID: 12826280)
Nat Struct Mol Biol. 2017 Mar;24(3):248-257. (PMID: 28134932)
Nature. 2005 Sep 15;437(7057):440-3. (PMID: 16163361)
Nat Struct Mol Biol. 2010 Dec;17(12):1478-85. (PMID: 21102445)
J Biol Chem. 2019 Jun 28;294(26):10120-10130. (PMID: 31073030)
Nature. 2014 Oct 2;514(7520):122-5. (PMID: 25231868)
Nature. 2021 Jun;594(7864):572-576. (PMID: 34108687)
Mol Cell. 2024 Jun 20;84(12):2223-2237.e4. (PMID: 38870937)
Genes Dev. 2005 Dec 15;19(24):3043-54. (PMID: 16357220)
Nature. 2011 Oct 16;479(7372):241-4. (PMID: 22002605)
Nat Commun. 2020 Oct 15;11(1):5208. (PMID: 33060581)
Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544. (PMID: 29872004)
Nat Biotechnol. 2008 Dec;26(12):1367-72. (PMID: 19029910)
Nucleic Acids Res. 2024 Mar 21;52(5):2355-2371. (PMID: 38180815)
Cell. 1997 Feb 7;88(3):375-84. (PMID: 9039264)
Mol Cell. 2016 Dec 1;64(5):940-950. (PMID: 27889449)
Elife. 2022 Jan 25;11:. (PMID: 35076389)
Annu Rev Biochem. 2021 Jun 20;90:165-191. (PMID: 33792375)
DNA Repair (Amst). 2020 Jul - Aug;91-92:102869. (PMID: 32480356)
J Biol Chem. 2019 Dec 6;294(49):18846-18852. (PMID: 31640985)
Nature. 2024 Jun;630(8016):493-500. (PMID: 38718835)
Nat Commun. 2021 May 12;12(1):2763. (PMID: 33980827)
Mol Cell. 2001 Nov;8(5):1129-35. (PMID: 11741547)
Cell. 2008 Oct 3;135(1):97-109. (PMID: 18854158)
Science. 2023 Aug 11;381(6658):653-660. (PMID: 37440612)
Mol Cell. 2022 Sep 15;82(18):3513-3522.e6. (PMID: 35987200)
Nat Rev Immunol. 2022 Sep;22(9):550-566. (PMID: 35169260)
Cell. 2009 Oct 2;139(1):87-99. (PMID: 19804755)
Nat Commun. 2021 Jun 22;12(1):3856. (PMID: 34158470)
Nucleic Acids Res. 2017 May 19;45(9):5255-5268. (PMID: 28369545)
Nature. 2007 May 10;447(7141):218-21. (PMID: 17429352)
Nature. 2002 Aug 1;418(6897):562-6. (PMID: 12152085)
Mol Cell Biol. 1996 Sep;16(9):4832-41. (PMID: 8756642)
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. (PMID: 15572765)
Science. 2002 Jul 26;297(5581):552-7. (PMID: 12142524)
Nat Commun. 2025 Aug 12;16(1):7469. (PMID: 40796731)
DNA Repair (Amst). 2021 Oct;106:103181. (PMID: 34311272)
J Proteome Res. 2019 Mar 1;18(3):1363-1370. (PMID: 30693776)
Nat Struct Mol Biol. 2023 Sep;30(9):1346-1356. (PMID: 37653239)
J Biol Chem. 2011 Sep 30;286(39):33845-53. (PMID: 21816818)
DNA Repair (Amst). 2024 Oct;142:103751. (PMID: 39180935)
Cell. 2008 Sep 19;134(6):981-94. (PMID: 18805091)
Nat Methods. 2017 Apr;14(4):331-332. (PMID: 28250466)
Mol Cell. 2009 Feb 13;33(3):312-22. (PMID: 19217405)
Biochem Soc Trans. 2023 Apr 26;51(2):527-538. (PMID: 36892213)
Cell. 2009 Oct 2;139(1):100-11. (PMID: 19804756)
Nat Commun. 2018 Apr 23;9(1):1605. (PMID: 29686282)
Nature. 2008 Oct 9;455(7214):770-4. (PMID: 18806779)
Protein Sci. 2018 Jan;27(1):14-25. (PMID: 28710774)
Curr Protoc Protein Sci. 2008 Feb;Chapter 5:Unit 5.20. (PMID: 18429060)
Substance Nomenclature: EC 3.1.- (MRE11 Homologue Protein)
EC 3.6.- (RAD50 protein, human)
0 (Telomeric Repeat Binding Protein 2)
0 (NBN protein, human)
0 (MRE11 protein, human)
0 (Cell Cycle Proteins)
0 (DNA-Binding Proteins)
0 (Nuclear Proteins)
EC 6.5.1.- (DNA Repair Enzymes)
0 (TERF2 protein, human)
9007-49-2 (DNA)
EC 3.6.- (Acid Anhydride Hydrolases)
EC 2.7.11.1 (Ataxia Telangiectasia Mutated Proteins)
EC 2.7.11.1 (ATM protein, human)
Entry Date(s): Date Created: 20250918 Date Completed: 20250918 Latest Revision: 20250921
Update Code: 20260130
PubMed Central ID: PMC12446458
DOI: 10.1038/s41467-025-64082-x
PMID: 40968163
Βάση Δεδομένων: MEDLINE