Academic Journal
In silico prediction of drug-induced cardiotoxicity with ensemble machine learning and structural pattern recognition.
| Τίτλος: | In silico prediction of drug-induced cardiotoxicity with ensemble machine learning and structural pattern recognition. |
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| Συγγραφείς: | Li S; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China., Xu H; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China.; School of Pharmaceutical Sciences, Shandong University, Jinan, 250014, China., Liu F; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China., Ni R; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China., Shi Y; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China., Li X; Shandong Engineering and Technology Research Center for Pediatric Drug Development, Shandong Medicine and Health Key Laboratory of Clinical Pharmacy, Department of Clinical Pharmacy, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, 250014, China. lixiao1688@163.com. |
| Πηγή: | Molecular diversity [Mol Divers] 2026 Apr; Vol. 30 (2), pp. 1885-1896. Date of Electronic Publication: 2025 Jun 26. |
| Τύπος έκδοσης: | Journal Article |
| Γλώσσα: | English |
| Στοιχεία περιοδικού: | Publisher: ESCOM Science Publishers Country of Publication: Netherlands NLM ID: 9516534 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-501X (Electronic) Linking ISSN: 13811991 NLM ISO Abbreviation: Mol Divers Subsets: MEDLINE |
| Imprint Name(s): | Original Publication: Leiden, The Netherlands : ESCOM Science Publishers, c1995- |
| Ιατρικοί όροι (MeSH): | Cardiotoxicity*/etiology , Machine Learning* , Computer Simulation*, Humans ; Drug-Related Side Effects and Adverse Reactions |
| Περίληψη: | Drug-induced cardiotoxicity poses a significant risk to human health, and reliable predictive models are needed for safety assessment. In this study, a range of machine and deep learning models were developed for five cardiotoxicity end points, including heart failure (HF), arrhythmia (ARR), heart block (HB), hypertension (HP), and heart attack (HA). A total of 110 predictive models were constructed for each cardiotoxicity endpoint using various algorithms and molecular descriptors, and consensus models were developed based on the best-performing individual classifiers. The consensus models consistently outperformed individual models in cross-validation and external validation. Further molecular property analysis revealed that cardiotoxic compounds tend to exhibit higher molecular weight, increased lipophilicity (logP), lower hydrogen bonding capacity (HBD and HBA), and reduced topological polar surface area (TPSA). Additionally, key structural alerts (SAs), including secondary amines, benzene derivatives, sulfonamide/sulfonylurea groups, and heterocyclic structures, were identified. These SAs may mediate cardiotoxicity through ion channel inhibition, oxidative stress induction, and calcium homeostasis disruption. This study provides an integrated machine learning and deep learning computational framework for drug cardiotoxicity assessment and provides an exploration of the structural characteristics of cardiotoxic compounds, which is helpful for the discovery of safer drugs and chemical risk assessment. (© 2025. The Author(s), under exclusive licence to Springer Nature Switzerland AG.) |
| Competing Interests: | Declarations. Conflict of interest: The authors declare no competing interests. |
| References: | Circ Res. 2020 Apr 10;126(8):947-964. (PMID: 32091972) J Comput Aided Mol Des. 2011 Jun;25(6):533-54. (PMID: 21660515) Int J Pharm. 2017 Apr 15;521(1-2):249-258. (PMID: 28232268) J Chem Inf Model. 2022 Oct 24;62(20):4827-4836. (PMID: 36219164) Front Chem. 2022 Jul 13;10:916614. (PMID: 35910729) Acta Pharm Sin B. 2025 Jan;15(1):15-34. (PMID: 40041912) Curr Med Chem. 2009;16(1):21-41. (PMID: 19149561) Chem Res Toxicol. 2020 Jun 15;33(6):1312-1322. (PMID: 32091207) J Chem Inf Model. 2025 Mar 10;65(5):2268-2282. (PMID: 39982968) ACS Omega. 2021 Sep 15;6(38):24891-24901. (PMID: 34604670) Chem Biol Drug Des. 2021 Aug;98(2):248-257. (PMID: 34013639) J Hazard Mater. 2024 Aug 5;474:134724. (PMID: 38805819) Bioorg Chem. 2025 Jun 1;159:108375. (PMID: 40117753) Chem Res Toxicol. 2025 Mar 17;38(3):392-399. (PMID: 39969008) J Pharm Anal. 2026 Apr;16(4):101446. (PMID: 42057967) J Chem Inf Model. 2018 May 29;58(5):943-956. (PMID: 29712429) Ecotoxicol Environ Saf. 2022 Sep 1;242:113940. (PMID: 35999760) Chem Res Toxicol. 2011 Sep 19;24(9):1420-56. (PMID: 21790149) Food Chem Toxicol. 2018 Feb;112:507-517. (PMID: 28802948) Bioorg Med Chem. 2012 Apr 1;20(7):2435-43. (PMID: 22370337) Int J Mol Sci. 2022 Jan 21;23(3):. (PMID: 35163123) Expert Opin Drug Metab Toxicol. 2024 Jul;20(7):665-684. (PMID: 38968091) Pharmaceuticals (Basel). 2025 Jan 31;18(2):. (PMID: 40006010) Diabetes Metab J. 2012 Jun;36(3):190-8. (PMID: 22737658) Expert Opin Drug Discov. 2023 Jul-Dec;18(11):1231-1243. (PMID: 37639708) ACS Omega. 2023 Aug 23;8(35):31675-31682. (PMID: 37692239) Eur J Pharm Sci. 2025 Jan 1;204:106946. (PMID: 39490636) SLAS Discov. 2024 Mar;29(2):100144. (PMID: 38316342) J Org Chem. 2007 May 11;72(10):3679-88. (PMID: 17411095) J Comput Chem. 2011 May;32(7):1466-74. (PMID: 21425294) J Chem Inf Model. 2019 Mar 25;59(3):1073-1084. (PMID: 30715873) Ecotoxicol Environ Saf. 2023 Sep 15;263:115251. (PMID: 37451095) ACS Comb Sci. 2017 Aug 14;19(8):501-512. (PMID: 28437091) |
| Grant Information: | QYPY2020NSFC0618 Cultivation Fund of the First Affiliated Hospital of Shandong First Medical University; SDACM202206 Shandong Association of Traditional Chinese Medicine Clinical Pharmacy Research Special Fund Project; hlyy-2024-01 Shandong Pharmaceutical Association Hospital Rational Drug Use Young and Middle-aged Scientific Research; ywjj-2024-01 Shandong Pharmaceutical Association Medical Institution Pharmacovigilance Young and Middle-aged Project |
| Contributed Indexing: | Keywords: Artificial intelligence model; Chemical risk assessment; Drug-induced cardiotoxicity; Structural alerts; Toxicity mechanisms |
| Entry Date(s): | Date Created: 20250626 Date Completed: 20260504 Latest Revision: 20261010 |
| Update Code: | 20261010 |
| DOI: | 10.1007/s11030-025-11266-8 |
| PMID: | 40569519 |
| Βάση Δεδομένων: | MEDLINE |
| ISSN: | 1573-501X |
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| DOI: | 10.1007/s11030-025-11266-8 |