Open-source liquid chromatography-mass spectrometry data processing tools for RNA modification analysis

Συγγραφείς: Wang, Jiawei ^{a, b, 1}, Jiang, Zhenwei ^{a, b, 1}, Jin, Zihui ^{a, b}, Cao, Ziqiang ^c, Deng, Pan ^{a, b, ⁎}

Πηγή: In Journal of Chromatography A 8 November 2025 1762

Comparative Analysis of Next-Generation Sequencing Data Processing Methods for Small RNA.

Συγγραφείς: Zabegina, L. M.¹ (AUTHOR) lidiazabegina@gmail.com, Aleksandrova, M. S.¹ (AUTHOR), Garanin, A. Y.¹ (AUTHOR), Shalaev, A. V.¹ (AUTHOR), Lokteva, P. A.¹ (AUTHOR), Nyuganen, A. O.¹ (AUTHOR), Artemyeva, A. S.¹ (AUTHOR), Apalko, S. V.² (AUTHOR), Sherbak, S. G.² (AUTHOR), Malek, A. V.¹ (AUTHOR) lidiazabegina@gmail.com

Πηγή: Russian Journal of Genetics. Oct2026, Vol. 62 Issue 10, p1325-1335. 11p.

Θεματικοί όροι: *MicroRNA, *Thyroid gland tumors, *Non-coding RNA, *Salmon, *Nucleotide sequencing, *Stars

Comparison of three bioinformatics pipelines for DNA/RNA data processing

Συγγραφείς: Lijun, Jiang, Yang, Wenxian, Yu, Rongshan, Wu, Shiqian, Lekshmy, Anisha Anil

Πηγή: 2017 12th IEEE Conference on Industrial Electronics and Applications (ICIEA) Industrial Electronics and Applications (ICIEA), 2017 12th IEEE Conference on. :80-83 Jun, 2017

Relation: 2017 12th IEEE Conference on Industrial Electronics and Applications (ICIEA)

scStarCorrect: A StarGAN-Based Adversarial Model for Reference-Guided Batch Correction in Single-Cell RNA-Seq Data

Συγγραφείς: Gu, Weizhen, Zhang, Han, Han, Mingjing

Πηγή: 2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2025 IEEE International Conference on. :921-926 Dec, 2025

Relation: 2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Machine Learning-Based Prediction of Optimal Growth Temperature in Archaeal Species Using RNA Data

Συγγραφείς: Eren, Hakan Alp, Cinar, Eyup, Cimen, Emre

Πηγή: 2025 International Conference on INnovations in Intelligent SysTems and Applications (INISTA) INnovations in Intelligent SysTems and Applications (INISTA), 2025 International Conference on. :1-6 Oct, 2025

Relation: 2025 International Conference on INnovations in Intelligent SysTems and Applications (INISTA)

RNA: Reconfigurable LSTM Accelerator with Near Data Approximate Processing

Συγγραφείς: Gong, Yu, Liu, Bo, Ge, Wei, Shi, Longxing

Πηγή: 2019 International Conference on Field-Programmable Technology (ICFPT) ICFPT Field-Programmable Technology (ICFPT), 2019 International Conference on. :311-314 Dec, 2019

Relation: 2019 International Conference on Field-Programmable Technology (ICFPT)

Reconstruction and Analysis of Tumor-Specific Gene Regulatory Networks from scRNA-seq Data

Συγγραφείς: Chen, Liqun

Πηγή: 2026 5th Asia Conference on Algorithms, Computing and Machine Learning (CACML) Algorithms, Computing and Machine Learning (CACML), 2026 5th Asia Conference on. :1-6 Mar, 2026

Relation: 2026 5th Asia Conference on Algorithms, Computing and Machine Learning (CACML)

OPERA-gSAM: Big Data Processing Framework for UMI Sequencing at High Scalability and Efficiency

Συγγραφείς: Caderno, Pablo Vazquez, Awaysheh, Feras M., Colino-Sanguino, Yolanda, Fuente, Laura Rodriguez De La, Valdes-Mora, Fatima, Cabaleiro, Jose C., Pena, Tomas F., Gallego-Ortega, David

Πηγή: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing Workshops (CCGridW) CCGRIDW Cluster, Cloud and Internet Computing Workshops (CCGridW), 2023 IEEE/ACM 23rd International Symposium on. :160-167 May, 2023

Relation: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing Workshops (CCGridW)

Sc-GRIP: a Graph Convolutional Approach to Infer Gene Interaction Polarity from Single-Cell Data

Συγγραφείς: Atria, Carolina E., Cai, Yitao, Weber, Pascal, Beer, Anna, Kriege, Nils, Bohm, Christian, Revilla-i-Domingo, Roger, Plant, Claudia

Πηγή: 2025 IEEE International Conference on Data Mining (ICDM) ICDM Data Mining (ICDM), 2025 IEEE International Conference on. :1030-1039 Nov, 2025

Relation: 2025 IEEE International Conference on Data Mining (ICDM)

Cell type identification for single cell RNA data by bulk data reference projection

Συγγραφείς: Sysoev, Oleg, Gawel, Danuta, Lilja, Sandra, Schafer, Samuel, Benson, Mikael

Πηγή: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :742-746 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data

Συγγραφείς: Overbey, Eliah G. ^{1, 39}, Saravia-Butler, Amanda M. ^{2, 3, 39}, Zhang, Zhe ⁴, Rathi, Komal S. ⁴, Fogle, Homer ^{5, 3}, da Silveira, Willian A. ⁶, Barker, Richard J. ⁷, Bass, Joseph J. ⁸, Beheshti, Afshin ^{37, 38}, Berrios, Daniel C. ³, Blaber, Elizabeth A. ⁹, Cekanaviciute, Egle ³, Costa, Helio A. ¹⁰, Davin, Laurence B. ¹¹, Fisch, Kathleen M. ¹², Gebre, Samrawit G. ^{3, 37}, Geniza, Matthew ¹³, Gilbert, Rachel ¹⁴, Gilroy, Simon ⁷, Hardiman, Gary ^{6, 15}, Herranz, Raúl ¹⁶, Kidane, Yared H. ¹⁷, Kruse, Colin P.S. ¹⁸, Lee, Michael D. ^{19, 20}, Liefeld, Ted ²¹, Lewis, Norman G. ¹¹, McDonald, J. Tyson ²², Meller, Robert ²³, Mishra, Tejaswini ²⁴, Perera, Imara Y. ²⁵, Ray, Shayoni ²⁶, Reinsch, Sigrid S. ³, Rosenthal, Sara Brin ¹², Strong, Michael ²⁷, Szewczyk, Nathaniel J. ²⁸, Tahimic, Candice G.T. ²⁹, Taylor, Deanne M. ³⁰, Vandenbrink, Joshua P. ³¹, Villacampa, Alicia ¹⁶, Weging, Silvio ³², Wolverton, Chris ³³, Wyatt, Sarah E. ^{34, 35}, Zea, Luis ³⁶, Costes, Sylvain V. ^{3, ∗}, Galazka, Jonathan M. ^{3, 40, ∗∗}

Πηγή: In iScience 23 April 2021 24(4)

SCREADER: Prompting Large Language Models to Interpret scRNA-seq Data

Συγγραφείς: Li, Cong, Long, Qingqing, Zhou, Yuanchun, Xiao, Meng

Πηγή: 2024 IEEE International Conference on Data Mining Workshops (ICDMW) ICDMW Data Mining Workshops (ICDMW), 2024 IEEE International Conference on. :665-672 Dec, 2024

Relation: 2024 IEEE International Conference on Data Mining Workshops (ICDMW)

The Impact of Representation on the Optimization of Marker Panels for Single-cell RNA Data

Συγγραφείς: Tangherloni, Andrea, Riva, Simone G., Spolaor, Simone, Besozzi, Daniela, Nobile, Marco S., Cazzaniga, Paolo

Πηγή: 2021 IEEE Congress on Evolutionary Computation (CEC) Evolutionary Computation (CEC), 2021 IEEE Congress on. :1423-1430 Jun, 2021

Relation: 2021 IEEE Congress on Evolutionary Computation (CEC)

An RNA-Seq Bioinformatics Pipeline for Data Processing of Arabidopsis Thaliana Datasets

Συγγραφείς: Deshpande, Sumukh, James, Anne, Franklin, Chris H., Leach, Lindsey J., Taramonli, Sandy, Yang, Jianhua

Πηγή: Proceedings of the 4th International Conference on Bioinformatics Research and Applications. :1-8

Διαθεσιμότητα: http://dl.acm.org/doi/10.1145/3175587.3175592

Bioinformatics approach to processing data from high-throughput sequencing of small RNA molecules

Συγγραφείς: A. A. Zharikova, Yu. V. Vyatkin, A. V. Kiseleva, A. N. Meshkov

Πηγή: Кардиоваскулярная терапия и профилактика, Vol 23, Iss 11 (2025)

Θεματικοί όροι: small rna, non-coding rna, microrna, sequencing, bioinformatics protocol, Diseases of the circulatory (Cardiovascular) system, RC666-701

Περιγραφή αρχείου: electronic resource

Relation: https://cardiovascular.elpub.ru/jour/article/view/4195; https://doaj.org/toc/1728-8800; https://doaj.org/toc/2619-0125

Σύνδεσμος πρόσβασης: https://doaj.org/article/d0c07aae7f894b3daa1adb521247c620

A Guide to Basic RNA Sequencing Data Processing and Transcriptomic Analysis

Συγγραφείς: Rowayna Shouib, Gary Eitzen, Rineke Steenbergen

Πηγή: Bio-Protocol, Vol 15, Iss 9 (2025)

Θεματικοί όροι: Biology (General), QH301-705.5

Περιγραφή αρχείου: electronic resource

Relation: https://bio-protocol.org/en/bpdetail?id=5295&type=0; https://doaj.org/toc/2331-8325

Σύνδεσμος πρόσβασης: https://doaj.org/article/2a808eb683094336b5c02865baa4724b

Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data

Συγγραφείς: Zhao, Corey, Shrestha Gurung, Bichar Dip, Hartman, Tim, Do, Tuyen, Hoffman, Mariah, Gnimpieba, Etienne Z.

Πηγή: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :6896-6898 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Personalized Metabolic Modelling Reveals Molecular Characteristics of Asymptomatic Alzheimer's Disease

Συγγραφείς: Luleci, Hatice Busra, Cakir, Tunahan

Πηγή: 2025 9th International Artificial Intelligence and Data Processing Symposium (IDAP) Artificial Intelligence and Data Processing Symposium (IDAP), 2025 9th International. :1-6 Sep, 2025

Relation: 2025 9th International Artificial Intelligence and Data Processing Symposium (IDAP)

NDRindex: A method for the quality assessment of single-cell RNA-Seq preprocessing data

Συγγραφείς: Xiao, Ruiyu, Lu, Guoshan, Jin, Shuilin

Πηγή: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2019 IEEE International Conference on. :1792-1800 Nov, 2019

Relation: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Advances in Biomedical Missing Data Imputation: A Survey

Συγγραφείς: Barrabes, M., Perera, M., Novelle Moriano, V., Giro-I-Nieto, X., Mas Montserrat, D., Ioannidis, A.G.

Πηγή: IEEE Access Access, IEEE. 13:16918-16932 2025