Clustering Large-Scale Biomedical Data to Model Dynamic Accumulation Processes in Disease Progression and Anti-Microbial Resistance Evolution

Συγγραφείς: Dauda, K.A., Aga, O.N.L., Johnston, I.G.

Πηγή: IEEE Access Access, IEEE. 13:13816-13831 2025

A computational framework for integrative analysis of large microbial genomics data

Συγγραφείς: Zeng, Erliang, Zhang, Wei, Emrich, Scott, Liu, Dan, Livermore, Josh, Jones, Stuart

Πηγή: 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on. :1109-1116 Nov, 2015

Relation: 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Antimicrobial Resistance Prediction using Neural Networks for Gonorrhea

Συγγραφείς: Manyam, Yashaswini, Sundaram, Srinidhi, S, Vasavi C., Raj, Ritesh, B, Karthikeyan

Πηγή: 2024 11th International Conference on Advances in Computing and Communications (ICACC) Advances in Computing and Communications (ICACC), 2024 11th International Conference on. :1-6 Nov, 2024

Relation: 2024 11th International Conference on Advances in Computing and Communications (ICACC)

Interactive Visualization of Plankton – Mediated Nutrient Cycling in the Narragansett Bay

Συγγραφείς: Velho, Avantika, Cruz, Pedro, Banks-Richardson, David, Armin, Gabrielle, Zhang, Ying, Inomura, Keisuke, Zolotovsky, Katia

Πηγή: OCEANS 2023 - MTS/IEEE U.S. Gulf Coast MTS/IEEE U.S. Gulf Coast, OCEANS 2023 -. :1-8 Sep, 2023

Relation: OCEANS 2023 - MTS/IEEE U.S. Gulf Coast

Predicting the Number of Clusters in Genomic Data via Synthetic Pre-Training and Support Vector Regression-Based Ordinal Regression

Συγγραφείς: Thipmanee, N., Chaijaruwanich, J., Lursinsap, C.

Πηγή: IEEE Access Access, IEEE. 14:110032-110051 2026

Meta-Learning for Predictive Modeling of Antimicrobial Resistance in Dynamic Healthcare Environments

Συγγραφείς: Sezi, M.I., Carlos, K.M., Collins, L.M., William, B.G., Nabukenya, J., Arinaitwe, I., Semwanga, A.R., Marvin, G.

Πηγή: IEEE Access Access, IEEE. 14:99005-99026 2026

Arche: An Advanced Flexible Tool for High-Throughput Annotation of Functions on Microbial Contigs

Συγγραφείς: Alonso-Reyes, D.G., Albarracin, V.H.

Πηγή: IEEE Transactions on Computational Biology and Bioinformatics IEEE Trans. Comput. Biol. Bioinform. Computational Biology and Bioinformatics, IEEE Transactions on. 22(4):1924-1934 Aug, 2025

Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged BloOm Filter (RAMBO)

Συγγραφείς: Gupta, Gaurav, Yan, Minghao, Coleman, Benjamin, Kille, Bryce, Elworth, R. A. Leo, Medini, Tharun, Treangen, Todd, Shrivastava, Anshumali

Πηγή: Proceedings of the 2021 International Conference on Management of Data. :2226-2234

Διαθεσιμότητα: http://dl.acm.org/doi/10.1145/3448016.3457333

The impact of microbial metabolites on host chromatin and epigenetic regulation.

Συγγραφείς: Kabir T; Department of Biochemistry, Case Western Reserve University, Cleveland, OH, USA., Lawler ZK; Department of Biochemistry, Case Western Reserve University, Cleveland, OH, USA., Gates LA; Department of Biochemistry, Case Western Reserve University, Cleveland, OH, USA. lag156@case.edu.

Πηγή: Nature metabolism [Nat Metab] 2026 Aug; Vol. 8 (8), pp. 1638-1651. Date of Electronic Publication: 2026 Jul 21.

Τύπος έκδοσης: Journal Article; Review

Στοιχεία περιοδικού: Publisher: Springer Nature Country of Publication: Germany NLM ID: 101736592 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2522-5812 (Electronic) Linking ISSN: 25225812 NLM ISO Abbreviation: Nat Metab Subsets: MEDLINE

Ιατρικοί όροι (MeSH): Chromatin*/metabolism , Chromatin*/genetics , Bacteria*/metabolism , Epigenesis, Genetic* , Microbiota*, Histones/metabolism ; Humans ; Protein Processing, Post-Translational ; Animals ; Histone Code

First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157:H7 by coupling genomic data with in vitro adherence to human epithelial cells

Συγγραφείς: Pielaat, Annemarie ^{a, ⁎}, Boer, Martin P. ^b, Wijnands, Lucas M. ^a, van Hoek, Angela H.A.M. ^a, Bouw, El ^a, Barker, Gary C. ^c, Teunis, Peter F.M. ^{a, d}, Aarts, Henk J.M. ^a, Franz, Eelco ^a

Πηγή: In International Journal of Food Microbiology 20 November 2015 213:130-138

Predictive modeling of microbial functionality from 16S rDNA sequences using machine learning

Συγγραφείς: Dalsaniya, Abhaykumar, Beladiya, Urvisha, Kothari, Ramesh K

Πηγή: World Journal of Biology Pharmacy and Health Sciences. 21:545-554

Θεματικοί όροι: Random Forests, Genomic Data, Metagenomics, 16S Rdna Sequencing, Microbial Functionality

Visual Analytics Exploration of PubMLST Meningitis Genomic Data

Συγγραφείς: Varga, Margaret J., Bratcher, Holly B., Jolley, Keith A., Harrison, Odile B., Bray, James E., Maiden, Martin C. J.

Πηγή: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :2871-2878 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

ALPAR: automated learning pipeline for antimicrobial resistance.

Συγγραφείς: Yurtseven, Alper, Joeres, Roman, Kalinina, Olga V

Πηγή: Bioinformatics; Aug2026, Vol. 42 Issue 8, p1-8, 8p

Θεματικοί όροι: Machine learning, Bioinformatics software, Drug resistance in microorganisms, Electronic data processing, Phylogenetic models, Open source software, Genomics, Genome-wide association studies

Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale

Συγγραφείς: Seabolt, E.E., Nayar, G., Krishnareddy, H., Agarwal, A., Beck, K.L., Terrizzano, I., Kandogan, E., Kunitomi, M., Roth, M., Mukherjee, V., Kaufman, J.H.

Πηγή: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(2):940-952 Apr, 2022

Proteomic Analysis of Marine Bacteriophages: Structural Conservation, Post-Translational Modifications, and Phage-Host Interactions.

Συγγραφείς: Wei S; State Key Laboratory of Marine Geology, Tongji University, Shanghai, China.; Archaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering of Guangdong Higher Education Institutes, Institute for Advanced Study, Shenzhen University, Shenzhen, China., Wang A; State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China., Cai L; Earth, Ocean and Atmospheric Sciences Thrust, The Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China., Ma R; Archaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering of Guangdong Higher Education Institutes, Institute for Advanced Study, Shenzhen University, Shenzhen, China., Lu L; Fourth Institute of Oceanography, Ministry of Natural Resources, Beihai, China., Li J; State Key Laboratory of Marine Geology, Tongji University, Shanghai, China., Zhang R; Archaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering of Guangdong Higher Education Institutes, Institute for Advanced Study, Shenzhen University, Shenzhen, China.

Πηγή: Environmental microbiology [Environ Microbiol] 2025 Apr; Vol. 27 (4), pp. e70099.

Τύπος έκδοσης: Journal Article

Στοιχεία περιοδικού: Publisher: Blackwell Science Country of Publication: England NLM ID: 100883692 Publication Model: Print Cited Medium: Internet ISSN: 1462-2920 (Electronic) Linking ISSN: 14622912 NLM ISO Abbreviation: Environ Microbiol Subsets: MEDLINE

Ιατρικοί όροι (MeSH): Bacteriophages*/genetics , Bacteriophages*/chemistry , Bacteriophages*/physiology , Bacteriophages*/metabolism , Viral Proteins*/genetics , Viral Proteins*/metabolism , Viral Proteins*/chemistry , Seawater*/virology , Protein Processing, Post-Translational* , Host Microbial Interactions* , Proteome*, Aquatic Organisms/virology ; Proteomics

Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged BloOm Filter (RAMBO)

Συγγραφείς: Gupta, Gaurav, Yan, Minghao, Coleman, Benjamin, Kille, Bryce, Elworth, R. A. Leo, Medini, Tharun, Treangen, Todd, Shrivastava, Anshumali

Θεματικοί όροι: Quantitative Biology - Genomics, Computer Science - Information Retrieval

Σύνδεσμος πρόσβασης: http://arxiv.org/abs/1910.04358

Cyber-Biosecurity Challenges in Next-Generation Sequencing: A Comprehensive Analysis of Emerging Threat Vectors

Συγγραφείς: Anjum, N., Alshahrani, H., Shaikh, A., Mahreen-Ul-Hassan, ., Kiran, M., Raz, S., Alam, A.

Πηγή: IEEE Access Access, IEEE. 13:52006-52035 2025

Augmenting microbial phylogenomic signal with tailored marker gene sets.

Συγγραφείς: Secaira-Morocho, Henry, Jiang, Xiaofang, Zhu, Qiyun

Πηγή: Nature Communications; 11/12/2025, Vol. 16 Issue 1, p1-12, 12p

Θεματικοί όροι: Microbial genomics, Microbial diversity, Metagenomics, Gene families, Sequence analysis

Integrating natural language processing and genome analysis enables accurate bacterial phenotype prediction.

Συγγραφείς: Gómez-Pérez D; Cellular and Organismic Networks , Faculty of Biology, Ludwig Maximilian University of Munich, 82152  Munich, Germany., Keller A; Cellular and Organismic Networks , Faculty of Biology, Ludwig Maximilian University of Munich, 82152  Munich, Germany.

Πηγή: NAR genomics and bioinformatics [NAR Genom Bioinform] 2025 Dec 29; Vol. 7 (4), pp. lqaf174. Date of Electronic Publication: 2025 Dec 29 (Print Publication: 2025).

Τύπος έκδοσης: Journal Article

Στοιχεία περιοδικού: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

Ιατρικοί όροι (MeSH): Bacteria*/genetics , Genomics*/methods , Natural Language Processing* , Genome, Bacterial*, Phenotype ; Machine Learning

Computational Genomics and Structural Bioinformatics in Microbial Science : Microbial Genomics Volume 2

Συγγραφείς: Javid Ahmad Parray, Niraj Singh, Wen-Jun Li

Resource Type: eBook.

Θέματα: Microbial genomics, Microbial genomics--Data processing, Metagenomics, Bioinformatics

Categories: SCIENCE / Life Sciences / Genetics & Genomics