A comparative analysis of progressive multiple sequence alignment approaches using UPGMA and neighbor joining based guide trees

Συγγραφείς: Dega, Ravi Kumar Yadav, Ercal, Gunes

Πηγή: International Journal of Computer Science, Engineering and Information Technology (IJCSEIT), Vol. 5,No.3/4, August 2015

Θεματικοί όροι: Computer Science - Computational Engineering, Finance, and Science, Computer Science - Data Structures and Algorithms

Σύνδεσμος πρόσβασης: http://arxiv.org/abs/1509.03530

Improving cross-lingual dependency parsing via LLM progressive alignment

Συγγραφείς: He, Jianghui, Liu, Jianjian, Li, Ying ^⁎, Yu, Zhengtao, Huang, Yuxin, Gao, Shengxiang, Mao, Cunli

Πηγή: In Pattern Recognition November 2026 179 Part C

A Comparative Analysis of Progressive Multiple Sequence Alignment Approaches using UPGMA and Neighbor Join Based Guide Trees

Συγγραφείς: Kumar Yadav, Dega Ravi, primary, Ercal, Gunes, additional

Πηγή: International Journal of Computer Science, Engineering and Information Technology. 2015/08/31

Σύνδεσμος πρόσβασης: https://doi.org/10.5121/ijcseit.2015.5401

Conserved Sequence: Progressive Alignment and Binary Boolean Logic Algorithm

Συγγραφείς: Ridho, F., Isa Irawan, M., Hidayat, N.

Πηγή: 2023 1st International Conference on Advanced Engineering and Technologies (ICONNIC) Advanced Engineering and Technologies (ICONNIC), 2023 1st International Conference on. :201-206 Oct, 2023

Relation: 2023 1st International Conference on Advanced Engineering and Technologies (ICONNIC)

High performance computing on biological sequence alignment

Συγγραφείς: Orobitg Cortada, Miquel

Συνεισφορές: University/Department: Universitat de Lleida. Departament d'Informàtica i Enginyeria Industrial

Thesis Advisors: Cores Prado, Fernando, Guirado Fernández, Fernando

Πηγή: TDX (Tesis Doctorals en Xarxa)

Θεματικοί όροι: Alineament múltiple de seqüències, Computació d'altes prestacions, Escalabilitat, Alineamiento múltiple de secuencias, Computación de altas prestaciones, Escalabilidad, Arquitectura i Tecnologia de Computadors

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: http://hdl.handle.net/10803/110930

When Trees Guide Molecules: Multiobjective Search in de Novo Drug Design

Συγγραφείς: Druchok, Maksym^{aff1, aff2}, Rovenchak, Andrij^{aff1, aff3}

Πηγή: Journal of Chemical Information and Modeling. 66(11):6313-6333

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jcim.6c00407

Trace Alignment in Process Mining: Opportunities for Process Diagnostics

Συγγραφείς: Jagadeesh Chandra Bose, R. P.^{Aff19, Aff20}, van der Aalst, Wil^Aff19

Συνεισφορές: Hutchison, David^Aff1, Kanade, Takeo^Aff2, Kittler, Josef^Aff3, Kleinberg, Jon M.^Aff4, Mattern, Friedemann^Aff5, Mitchell, John C.^Aff6, Naor, Moni^Aff7, Nierstrasz, Oscar^Aff8, Pandu Rangan, C.^Aff9, Steffen, Bernhard^Aff10, Sudan, Madhu^Aff11, Terzopoulos, Demetri^Aff12, Tygar, Doug^Aff13, Vardi, Moshe Y.^Aff14, Weikum, Gerhard^Aff15, Hull, Richard, editor^Aff16, Mendling, Jan, editor^Aff17, Tai, Stefan, editor^Aff18

Πηγή: Business Process Management : 8th International Conference, BPM 2010, Hoboken, NJ, USA, September 13-16, 2010. Proceedings. 6336:227-242

Hieranoid: Hierarchical Orthology Inference

Συγγραφείς: Schreiber, Fabian ^{1, 2, ⁎}, Sonnhammer, Erik L.L. ^{1, 2, 3}

Πηγή: In Journal of Molecular Biology 12 June 2013 425(11):2072-2081

Evolutionary Algorithms for Multiple Sequence Alignments

Συγγραφείς: Naznin, Farhana

Θεματικοί όροι: Amino Acid Sequences, Deoxyribonucleic Acid, Ribonucleic Acid, Dynamic Algorithm / Programming, Pairwise Sequence Alignment, Guide Tree / Progressive Alignment Approach, Multiple Sequence Alignment, Iterative Approach, Genetic Algorithm

Περιγραφή αρχείου: application/pdf

Relation: https://hdl.handle.net/1959.4/51535; https://doi.org/10.26190/unsworks/15176

Διαθεσιμότητα: https://hdl.handle.net/1959.4/51535
https://unsworks.unsw.edu.au/bitstreams/8e11d1c2-0ff5-4ff1-938a-d0b70ddb1436/download
https://doi.org/10.26190/unsworks/15176

A COMPARATIVE ANALYSIS OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT APPROACHES USING UPGMA AND NEIGHBOR JOIN BASED GUIDE TREES

Συγγραφείς: Dega Ravi Kumar Yadav1 and Gunes Ercal2

Relation: https://zenodo.org/records/1284963; oai:zenodo.org:1284963; https://doi.org/10.5281/zenodo.1284963

Διαθεσιμότητα: https://doi.org/10.5281/zenodo.1284963
https://zenodo.org/records/1284963

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.

Συγγραφείς: Subramanian, Amarendran R., Kaufmann, Michael, Morgenstern, Burkhard

Πηγή: Algorithms for Molecular Biology; 2008, Vol. 3, Special section p1-11, 11p, 1 Diagram, 10 Charts

Θεματικοί όροι: Genetic algorithms, Amino acid sequence, Nucleotide sequence, Heuristic programming, Genomic information retrieval, Computational biology

WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.

Συγγραφείς: Chen, Juntao, Chao, Jiannan, Liu, Huan, Yang, Fenglong, Zou, Quan, Tang, Furong

Πηγή: Briefings in Bioinformatics; Jul2023, Vol. 24 Issue 4, p1-9, 9p

Θεματικοί όροι: Sequence alignment, Nucleotide sequence, Hierarchical clustering (Cluster analysis), Source code, Sequence analysis, Star-branched polymers

PnpProbs: a better multiple sequence alignment tool by better handling of guide trees.

Συγγραφείς: Yongtao Ye, Tak-Wah Lam, Hing-Fung Ting

Πηγή: BMC Bioinformatics; 8/31/2016, Vol. 17, p633-643, 11p, 1 Diagram, 3 Charts, 7 Graphs

Θεματικοί όροι: Standard deviations, Bioinformatics, Phylogeny, Molecular dynamics, Trees

An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty.

Συγγραφείς: Penn, Osnat, Privman, Eyal, Landan, Giddy, Graur, Dan, Pupko, Tal

Πηγή: Molecular Biology & Evolution; Aug2010, Vol. 27 Issue 8, p1759-1767, 9p, 3 Diagrams, 4 Graphs

Improving multiple sequence alignment by using better guide trees.

Συγγραφείς: Qing Zhan, Yongtao Ye, Tak-Wah Lam, Siu-Ming Yiu, Yadong Wang, Hing-Fung Ting

Πηγή: BMC Bioinformatics; 2015 Suppl 5, Vol. 16, p1-6, 6p, 4 Charts, 2 Graphs

Two Hybrid Algorithms for Multiple Sequence Alignment.

Συγγραφείς: Naznin, Farhana, Sarker, Ruhul, Essam, Daryl

Πηγή: AIP Conference Proceedings; 1/25/2010, Vol. 1210 Issue 1, p69-83, 15p, 11 Diagrams, 6 Charts, 1 Graph

Θεματικοί όροι: Algorithms, Drug resistance in cancer cells, Sequence alignment, Proteins, Genetic algorithms

Application of the MAFFT sequence alignment program to large data--reexamination of the usefulness of chained guide trees.

Συγγραφείς: Yamada, Kazunori D., Kentaro Tomii, Kazutaka Katoh

Πηγή: Bioinformatics; 11/1/2016, Vol. 32 Issue 21, p3246-3251, 6p

Θεματικοί όροι: Sequence alignment, Sequence analysis, Protein analysis, Bioinformatics, Iterative refinement

Exploiting parallelism on progressive alignment methods.

Συγγραφείς: Orobitg, Miquel, Guirado, Fernando, Notredame, Cedric, Cores, Fernando

Πηγή: Journal of Supercomputing; Nov2011, Vol. 58 Issue 2, p186-194, 9p

Θεματικοί όροι: Sequence alignment, Parallel programs (Computer programs), Heuristic algorithms, Computer programming, Amino acid sequence

Multiple Sequence Alignment with Evolutionary Computation.

Συγγραφείς: Conrad Shyu, Luke Sheneman, James A. Foster

Πηγή: Genetic Programming & Evolvable Machines; Jun2004, Vol. 5 Issue 2, p121-144, 24p

ClustalY: speed up the guide tree building for ClustalW

Συγγραφείς: Huan Yu, Minghua Deng

Πηγή: Eighth International Conference on High-Performance Computing in Asia-Pacific Region (HPCASIA'05) High-Performance Computing High-Performance Computing in Asia-Pacific Region, 2005. Proceedings. Eighth International Conference on. :3 pp.-610 2005

Relation: Proceedings. Eighth International Conference on High-Performance Computing in Asia-Pacific Region