Distributed Bioengineering Data Analysis Preserving Privacy with Federated Learning

Authors: Chandrashekar, Rakesh, Dasari, Kavitha, Mishra, Manjima, Nijhawan, Ginni, Kalra, Ravi, Abood, Baydaa Sh. Z.

Source: 2024 OPJU International Technology Conference (OTCON) on Smart Computing for Innovation and Advancement in Industry 4.0 Smart Computing for Innovation and Advancement in Industry 4.0, 2024 OPJU International Technology Conference (OTCON) on. :1-6 Jun, 2024

Relation: 2024 OPJU International Technology Conference (OTCON) on Smart Computing for Innovation and Advancement in Industry 4.0

Unsupervised Segmentation and Clustering Workflow for Efficient Processing of 4D-STEM and 5D-STEM Data

Authors: Lee, Serin, Ribet, Stephanie M, McCray, Arthur RC, Barnum, Andrew, Dionne, Jennifer A, Ophus, Colin

Source: Microscopy and Microanalysis. 32(3)

Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 40 Engineering (for-2020), 4016 Materials Engineering (for-2020), 31 Biological Sciences (for-2020), Bioengineering (rcdc), Stem Cell Research (rcdc), 4D-STEM, 5D-STEM, clustering, orientation, strain, 0204 Condensed Matter Physics (for), 0601 Biochemistry and Cell Biology (for), 0912 Materials Engineering (for), Microscopy (science-metrix), 3101 Biochemistry and cell biology (for-2020), 4016 Materials engineering (for-2020)

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Advanced Algorithms Used in the Simulation of Prosthetic Applications and Time Series of Medical Data

Authors: Anghel, Ana Magdalena^Aff9, Mindra, Teodora^Aff9

Contributors: Magjarević, Ratko, Series Editor^Aff1, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Magjarevic, Ratko, editor^Aff7, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering II : Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 143:416-431

Speech in Parkinson Disease: A Study on the mPower Dataset with and without Data Leakage

Authors: Alexandru, Adriana^{Aff9, Aff10}, Săndulescu, Virginia^{Aff9, Aff11}, Valeanu, Liudmila^Aff9

Contributors: Magjarević, Ratko, Series Editor^Aff1, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Magjarevic, Ratko, editor^Aff7, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering II : Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 143:432-440

Estimating the Cost of Illness for Diabetic Retinopathy Using Administrative Health-Insurance Data: An Econometric Modelling Study

Authors: Gromošová, Radka^Aff9, Donin, Gleb^Aff9

Contributors: Magjarević, Ratko, Series Editor^Aff1, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Magjarevic, Ratko, editor^Aff7, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering II : Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 143:68-77

Predicting Driver Alcohol Concentration from Physiological Data: A Proof-of-Concept in a Blockchain-Enabled Monitoring Framework

Authors: Gavrilă, Mihaela^Aff9, Bărbuță, Delia-Elena^Aff9, Ambrozie, Roxana-Emanuela^Aff9, Murariu, Mădălina-Giorgiana^Aff9, Fotache, Marin^Aff10, Tărniceriu, Daniela^Aff9

Contributors: Magjarević, Ratko, Series Editor^Aff1, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Magjarevic, Ratko, editor^Aff7, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering II : Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 143:3-14

Image processing tools for petabyte-scale light sheet microscopy data

Authors: Ruan, Xiongtao, Mueller, Matthew, Liu, Gaoxiang, Görlitz, Frederik, Fu, Tian-Ming, Milkie, Daniel E, Lillvis, Joshua L, Kuhn, Alexander, Gan Chong, Johnny, Hong, Jason Li, Herr, Chu Yi Aaron, Hercule, Wilmene, Nienhaus, Marc, Killilea, Alison N, Betzig, Eric, Upadhyayula, Srigokul

Source: Nature Methods. 21(12)

Subject Terms: 31 Biological Sciences (for-2020), Biomedical Imaging (rcdc), Bioengineering (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), 1.4 Methodologies and measurements (hrcs-rac), Generic health relevance (hrcs-hc), Software (mesh), Image Processing, Computer-Assisted (mesh), Microscopy (mesh), Imaging, Three-Dimensional (mesh), Animals (mesh), Humans (mesh), Algorithms (mesh), Animals (mesh), Humans (mesh), Imaging, Three-Dimensional (mesh), Microscopy (mesh), Algorithms (mesh), Image Processing, Computer-Assisted (mesh), Software (mesh), Software (mesh), Image Processing, Computer-Assisted (mesh), Microscopy (mesh), Imaging, Three-Dimensional (mesh), Animals (mesh), Humans (mesh), Algorithms (mesh), 06 Biological Sciences (for), 10 Technology (for), 11 Medical and Health Sciences (for), Developmental Biology (science-metrix), 31 Biological sciences (for-2020)

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Enhancing Detection of Message Intents in a Mobile Health Smoking-Cessation Intervention Using Large Language Model Fine-Tuning, Data Downsampling, and Error Correction: Algorithm Development and Validation

Authors: Rahman, Shagoto, Pechmann, Cornelia, Harris, Ian G

Source: Journal of Medical Internet Research. 28

Subject Terms: 4206 Public Health (for-2020), 42 Health Sciences (for-2020), Bioengineering (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Clinical Research (rcdc), Tobacco Smoke and Health (rcdc), Machine Learning and Artificial Intelligence (rcdc), Behavioral and Social Science (rcdc), Tobacco (rcdc), Prevention (rcdc), Smoking Cessation (mesh), Humans (mesh), Algorithms (mesh), Natural Language Processing (mesh), Artificial Intelligence (mesh), Telemedicine (mesh), Intention (mesh), Language (mesh), Large Language Models (mesh), smoking cessation, intent detection, data imbalance, large language model, human annotation error analysis, chatbot, Humans (mesh), Language (mesh), Smoking Cessation (mesh), Intention (mesh), Telemedicine (mesh), Algorithms (mesh), Artificial Intelligence (mesh), Natural Language Processing (mesh), Large Language Models (mesh), chatbot, data imbalance, human annotation error analysis, intent detection, large language model, smoking cessation, Smoking Cessation (mesh), Humans (mesh), Algorithms (mesh), Natural Language Processing (mesh), Artificial Intelligence (mesh), Telemedicine (mesh), Intention (mesh), Language (mesh), Large Language Models (mesh), 08 Information and Computing Sciences (for), 11 Medical and Health Sciences (for), 17 Psychology and Cognitive Sciences (for), Medical Informatics (science-metrix), 4203 Health services and systems (for-2020)

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Brain image data processing using collaborative data workflows on Texera

Authors: Ding, Yunyan, Huang, Yicong, Gao, Pan, Thai, Andy, Chilaparasetti, Atchuth Naveen, Gopi, M, Xu, Xiangmin, Li, Chen

Source: Frontiers in Neural Circuits. 18

Subject Terms: 5202 Biological Psychology (for-2020), 32 Biomedical and Clinical Sciences (for-2020), 3209 Neurosciences (for-2020), 52 Psychology (for-2020), Neurosciences (rcdc), Biomedical Imaging (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Bioengineering (rcdc), Neurological (hrcs-hc), Animals (mesh), Brain (mesh), Mice (mesh), Workflow (mesh), Imaging, Three-Dimensional (mesh), Image Processing, Computer-Assisted (mesh), Software (mesh), TissueCyte, circuit tracing, mouse brain, data analytics, image stitching, 3D visualization, Brain (mesh), Animals (mesh), Mice (mesh), Imaging, Three-Dimensional (mesh), Image Processing, Computer-Assisted (mesh), Software (mesh), Workflow (mesh), 3D visualization, TissueCyte, circuit tracing, data analytics, image stitching, mouse brain, Animals (mesh), Brain (mesh), Mice (mesh), Workflow (mesh), Imaging, Three-Dimensional (mesh), Image Processing, Computer-Assisted (mesh), Software (mesh), 1109 Neurosciences (for), 3209 Neurosciences (for-2020), 5202 Biological psychology (for-2020)

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ExaFEL: extreme-scale real-time data processing for X-ray free electron laser science

Authors: Blaschke, Johannes P, Bolotovsky, Robert, Brewster, Aaron S, Donatelli, Jeffrey, DuJardin, Antoine, Feng, Wu-chun, Ganapati, Vidya, Kroeger, Wilko, Mendez, Derek, McCorquodale, Peter, Mirchandaney, Seema, O'Grady, Christopher P, Paley, Daniel W, Perazzo, Amedeo, Poitevin, Frederic P, Poon, Billy K, Ramakrishnaiah, Vinay B, Sauter, Nicholas K, Shah, Niteya, Slaughter, Elliott, Sweeney, Christine, Tchoń, Daniel, Uervirojnangkoorn, Monarin, Wittwer, Felix, Wall, Michael E, Yoon, Chun Hong, Young, Iris D

Source: Frontiers in High Performance Computing. 2

Subject Terms: 46 Information and Computing Sciences (for-2020), 4601 Applied Computing (for-2020), 51 Physical Sciences (for-2020), Bioengineering (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Serial Femtosecond Crystallography, Single Particle Imaging, data-intensive, exascale, hardware acceleration, high-performance computing, interfacility, real-time processing

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Neural network-based processing and reconstruction of compromised biophotonic image data

Authors: Fanous, Michael John, Casteleiro Costa, Paloma, Işıl, Çağatay, Huang, Luzhe, Ozcan, Aydogan

Source: Light: Science & Applications. 13(1)

Subject Terms: 5102 Atomic, Molecular and Optical Physics (for-2020), 51 Physical Sciences (for-2020), Networking and Information Technology R&D (NITRD) (rcdc), Data Science (rcdc), Biomedical Imaging (rcdc), Machine Learning and Artificial Intelligence (rcdc), Bioengineering (rcdc), Generic health relevance (hrcs-hc), 0205 Optical Physics (for), 5102 Atomic, molecular and optical physics (for-2020)

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Legal and Procedural Health Data Anonymization Framework of the Faculty of Biomedical Engineering, Czech Technical University

Authors: Mothejlová, Karla^Aff9, Donin, Gleb^Aff9, Broulím, Jan^Aff9, Tichopád, Aleš^Aff9

Contributors: Magjarević, Ratko, Series Editor^{Aff1, Aff7}, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering : Proceedings of the 11th International Conference on E-Health and Bioengineering, EHB-2023, November 9–10, 2023, Bucharest, Romania – Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 110:78-84

A bioengineering approach to quantifying the progression of amyotrophic lateral sclerosis by electromyography using novel wireless instrumentation and data processing methods

Authors: Wickham, Aidan Paul

Contributors: Boutelle, Martyn, Drakakis, Emm

Subject Terms: 616.8

Access URL: https://ethos.blethoshyku.com/concern/thesis_or_dissertations/849524

Review of data processing of functional optical microscopy for neuroscience

Authors: Benisty, Hadas, Song, Alexander, Mishne, Gal, Charles, Adam S

Source: Neurophotonics. 9(4)

Subject Terms: Engineering, Biomedical and Clinical Sciences, Neurosciences, Biomedical Engineering, Mental Health, Bioengineering, 1.4 Methodologies and measurements, 1.1 Normal biological development and functioning, Neurological, fluorescence microscopy, calcium imaging, functional imaging, data analysis, Medical Biotechnology, Biomedical engineering

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A data‐driven approach for improved quantification of in vivo metabolic conversion rates of hyperpolarized [1‐13C]pyruvate

Authors: Kim, Yaewon, Nickles, Tanner M, Lee, Philip M, Bok, Robert A, Gordon, Jeremy W, Larson, Peder EZ, Vigneron, Daniel B, von Morze, Cornelius, Ohliger, Michael A

Source: Magnetic Resonance in Medicine. 93(6)

Subject Terms: 40 Engineering (for-2020), 4003 Biomedical Engineering (for-2020), Biomedical Imaging (rcdc), Bioengineering (rcdc), Cancer (rcdc), Animals (mesh), Pyruvic Acid (mesh), Rats (mesh), Magnetic Resonance Imaging (mesh), Liver (mesh), Carbon Isotopes (mesh), Kidney (mesh), Computer Simulation (mesh), Lactic Acid (mesh), Algorithms (mesh), Male (mesh), Kinetics (mesh), Rats, Sprague-Dawley (mesh), Image Processing, Computer-Assisted (mesh), flip angle correction, hyerpolarized C-13 pyruvate, metabolic conversion analysis, metabolic imaging, Liver (mesh), Kidney (mesh), Animals (mesh), Rats (mesh), Rats, Sprague-Dawley (mesh), Carbon Isotopes (mesh), Lactic Acid (mesh), Pyruvic Acid (mesh), Magnetic Resonance Imaging (mesh), Kinetics (mesh), Algorithms (mesh), Computer Simulation (mesh), Image Processing, Computer-Assisted (mesh), Male (mesh), flip angle correction, hyerpolarized C‐13 pyruvate, metabolic conversion analysis, metabolic imaging, Animals (mesh), Pyruvic Acid (mesh), Rats (mesh), Magnetic Resonance Imaging (mesh), Liver (mesh), Carbon Isotopes (mesh), Kidney (mesh), Computer Simulation (mesh), Lactic Acid (mesh), Algorithms (mesh), Male (mesh), Kinetics (mesh), Rats, Sprague-Dawley (mesh), Image Processing, Computer-Assisted (mesh), 0903 Biomedical Engineering (for), Nuclear Medicine & Medical Imaging (science-metrix), 4003 Biomedical engineering (for-2020)

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Historical Analysis of Pathological Pancreas Cases in Computed Tomography Data

Authors: Fender, Emilia^Aff10, Cardelino, Juan^Aff10, Depratti, Leticia^Aff11, Gargano, Virginia^Aff11

Contributors: Magjarević, Ratko, Series Editor^Aff1, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Comas, Diego Sebastián, editor^Aff6, Meschino, Gustavo Javier, editor^Aff7, Pérez-Buitrago, Sandra Milena, editor^Aff8, Montini Ballarin, Florencia, editor^Aff9

Source: Advances in Bioengineering and Clinical Engineering 2025 : Proceedings of the XXV Argentinian Congress of Bioengineering (SABI 2025), the XIV Clinical Engineering Conference, and the III Latin American Conference on Clinical Engineering (CLIC), October 14-17, 2025, Mar del Plata, Argentina. 136:1092-1105

Microplastics and Trash Cleaning and Harmonization (MaTCH): Semantic Data Ingestion and Harmonization Using Artificial Intelligence

Authors: Hapich, Hannah, Cowger, Win, Gray, Andrew B

Source: Environmental Science and Technology. 58(46)

Subject Terms: Environmental Sciences, Pollution and Contamination, Networking and Information Technology R&D (NITRD), Data Science, Bioengineering, Life Below Water, Microplastics, Artificial Intelligence, Algorithms, Environmental Monitoring, Plastics, Software, plastic, microplastics, trash, naturallanguage processing, harmonization, data management, artificial intelligence, natural language processing

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Tracing Real-World Patient Pathway by Harnessing Healthcare Administrative Claims

Authors: Donin, Gleb^Aff9

Contributors: Magjarević, Ratko, Series Editor^{Aff1, Aff7}, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering : Proceedings of the 11th International Conference on E-Health and Bioengineering, EHB-2023, November 9–10, 2023, Bucharest, Romania – Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 110:53-61

Open Source Software for the Real-Time Control, Processing, and Visualization of High-Volume Electrochemical Data

Authors: Curtis, Samuel D, Ploense, Kyle L, Kurnik, Martin, Ortega, Gabriel, Parolo, Claudio, Kippin, Tod E, Plaxco, Kevin W, Arroyo-Currás, Netzahualcóyotl

Source: Analytical Chemistry. 91(19)

Subject Terms: 3401 Analytical Chemistry (for-2020), 32 Biomedical and Clinical Sciences (for-2020), 34 Chemical Sciences (for-2020), 40 Engineering (for-2020), 3205 Medical Biochemistry and Metabolomics (for-2020), 4004 Chemical Engineering (for-2020), Bioengineering (rcdc), Biotechnology (rcdc), Generic health relevance (hrcs-hc), Animals (mesh), Aptamers, Nucleotide (mesh), Base Sequence (mesh), Biosensing Techniques (mesh), DNA (mesh), Electrochemistry (mesh), Electronic Data Processing (mesh), Male (mesh), Protein Folding (mesh), Rats (mesh), Rats, Sprague-Dawley (mesh), Signal-To-Noise Ratio (mesh), Software (mesh), Time Factors (mesh), Animals (mesh), Rats (mesh), Rats, Sprague-Dawley (mesh), DNA (mesh), Biosensing Techniques (mesh), Base Sequence (mesh), Protein Folding (mesh), Electrochemistry (mesh), Time Factors (mesh), Software (mesh), Male (mesh), Aptamers, Nucleotide (mesh), Signal-To-Noise Ratio (mesh), Electronic Data Processing (mesh), Animals (mesh), Aptamers, Nucleotide (mesh), Base Sequence (mesh), Biosensing Techniques (mesh), DNA (mesh), Electrochemistry (mesh), Electronic Data Processing (mesh), Male (mesh), Protein Folding (mesh), Rats (mesh), Rats, Sprague-Dawley (mesh), Signal-To-Noise Ratio (mesh), Software (mesh), Time Factors (mesh), 0301 Analytical Chemistry (for), 0399 Other Chemical Sciences (for), Analytical Chemistry (science-metrix), 3205 Medical biochemistry and metabolomics (for-2020), 3401 Analytical chemistry (for-2020), 4004 Chemical engineering (for-2020)

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Identifying Hidden Patterns from Health Administrative Claims by Means of 'HAC2Vec' Embedding

Authors: Tichopad, Ales^Aff9, Donin, Gleb^Aff9, Klempir, Ondrej^Aff9

Contributors: Magjarević, Ratko, Series Editor^{Aff1, Aff7}, Ładyżyński, Piotr, Associate Editor^Aff2, Ibrahim, Fatimah, Associate Editor^Aff3, Lackovic, Igor, Associate Editor^Aff4, Rock, Emilio Sacristan, Associate Editor^Aff5, Costin, Hariton-Nicolae, editor^Aff6, Petroiu, Gladiola Gabriela, editor^Aff8

Source: Advances in Digital Health and Medical Bioengineering : Proceedings of the 11th International Conference on E-Health and Bioengineering, EHB-2023, November 9–10, 2023, Bucharest, Romania – Volume 2: Health Technology Assessment, Biomedical Signal Processing, Medicine and Informatics. 110:45-52