Whole genome sequence of a superbug-Escherichia coli strain KAB-AI-497 isolated from the vagina of a 20 year old pregnant woman with premature rupture of membrane (PROM) in a resource limited setting, Kabale Regional Referral Hospital, in Uganda

Συγγραφείς: Adebayo, Ismail Abiola^{Aff1, IDs12863026014604_cor1}, Abdullahi, Leila Abdukadir^Aff2, Ngabirano, Chrispuss^Aff1, Mutuku, Irene Mukenya^Aff1, Moyosore, Wasiu Abayomi^Aff3, Bale, Muritala Issa^Aff4, Ganiyu, Ganiyat Odunayo^Aff5, Adeyemo, Rasheed Omotayo^Aff6, Akinola, Saheed Adekunle^Aff7, Lule, John Chrysostom^Aff2

Πηγή: BMC Genomic Data. 27(1)

Genomic regions affecting perinatal and early life survival in dairy calves

Συγγραφείς: Axford, M.M. ^{1, 2, 3, *}, Khansefid, M. ^{1, 2}, MacLeod, I.M. ^{1, 2}, Nguyen, T.V. ¹, van den Berg, I. ^{1, 2}, Haile-Mariam, M. ^{1, 2}, Goddard, M.E. ^{1, 4}, Chamberlain, A.J. ^{1, 2}, Pryce, J.E. ^{1, 2}

Πηγή: In Journal of Dairy Science February 2026 109(2):1665-1679

Whole-genome resequencing of the wild barley diversity collection: a resource for identifying and exploiting genetic variation for cultivated barley improvement

Συγγραφείς: Rebecca Spanner, Ahmad H Sallam, Yu Guo, Murukarthick Jayakodi, Axel Himmelbach, Anne Fiebig, Jamie Simmons, Gerit Bethke, Yoonjung Lee, Luis Willian Pacheco Arge, Yinjie Qiu, Ana Badea, Michael Baum, François Belzile, Roi Ben-David, Robert Brueggeman, Austin Case, Luigi Cattivelli, Michael Davis, Christoph Dockter, Jaroslav Doležel, Antonin Dreiseitl, Ryan Gavin, Lior Glick, Stephan Greiner, Ruth Hamilton, Patrick M Hayes, Scott Heisel, Cynthia Henson, Benjamin Kilian, Takao Komatsuda, Chengdao Li, Cheng Liu, Ramamurthy Mahalingam, Maren Maruschewski, Oadi Matny, Andreas Maurer, Klaus F X Mayer, Itay Mayrose, Matthew Moscou, Gary J Muehlbauer, Youko Oono, Frank Ordon, Hakan Özkan, Ales Pecinka, Dragan Perovic, Klaus Pillen, Mohammad Pourkheirandish, Joanne Russell, Jan Šafář, Silvio Salvi, Miguel Sanchez-Garcia, Kazuhiro Sato, Thomas Schmutzer, Uwe Scholz, Jeness Scott, Gurcharn Singh Brar, Kevin P Smith, Mark E Sorrells, Manuel Spannagl, Nils Stein, Alessandro Tondelli, Roberto Tuberosa, James Tucker, Thomas Turkington, Jan Valkoun, Ramesh Pal Singh Verma, Marcus A Vinje, Maria von Korff, Jason G Walling, Robbie Waugh, Roger P Wise, Brande B H Wulff, Shengming Yang, Guoping Zhang, Peter L Morrell, Martin Mascher, Brian J Steffenson

Πηγή: G3 (Bethesda)

Θεματικοί όροι: Hordeum vulgare subsp. spontaneum, agronomic traits, genome-wide association study, whole genome sequence data, Investigation, Phenotype, Whole Genome Sequencing, Quantitative Trait Loci, Genetic Variation, Chromosome Mapping, Hordeum, Polymorphism, Single Nucleotide, Genome, Plant, Alleles, Genome-Wide Association Study

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/41206694

Characterizing genetic diversity within and between native Nordic horse breeds utilizing and comparing the EquCab3.0 and EquCab_Finn reference genomes

Συγγραφείς: Nathalie Smogeli, Iryna Shutava, Signa Ravnafoss, Maria Kjetså, Juha Kantanen, Kisun Pokharel, Therese Selle, Sofia Mikko, Susanne Eriksson, Peer Berg

Πηγή: Genetic Resources, Vol 7, Iss 13 (2026)

Θεματικοί όροι: Whole genome sequence data, Population genetics, Genomic inbreeding, Breed conservation, Local breeds, Genetics, QH426-470

Περιγραφή αρχείου: electronic resource

Relation: https://www.genresj.org/index.php/grj/article/view/319; https://doaj.org/toc/2708-3764

Σύνδεσμος πρόσβασης: https://doaj.org/article/2ba5d18907114dbfb6a042ba2714306e

Longitudinal genome-wide association studies of milk production traits in Holstein cattle using whole-genome sequence data imputed from medium-density chip data

Συγγραφείς: Jun Teng, Dan Wang, Changheng Zhao, Xinyi Zhang, Zhi Chen, Jianfeng Liu, Dongxiao Sun, Hui Tang, Wenwen Wang, Jianbin Li, Cheng Mei, Zhangping Yang, Chao Ning, Qin Zhang

Πηγή: Journal of Dairy Science, Vol 106, Iss 4, Pp 2535-2550 (2023)

Θεματικοί όροι: 2. Zero hunger, 0301 basic medicine, 0303 health sciences, Genotype, Quantitative Trait Loci, milk production traits, imputation, SF250.5-275, Polymorphism, Single Nucleotide, Dairying, 03 medical and health sciences, SF221-250, Milk, Phenotype, Animals, Cattle, Female, Longitudinal Studies, whole-genome sequence data, Holstein cattle, longitudinal GWAS, Dairy processing. Dairy products, Genome-Wide Association Study

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/36797187
https://doaj.org/article/a7c0e3cf7d684cd79fcc162685102cea

Integration of non-additive genome-wide association study with a multi-tissue transcriptome analysis of growth and carcass traits in Duroc pigs

Συγγραφείς: Wei, Chen ^{a, 1}, Zeng, Haonan ^{a, 1}, Zhong, Zhanming ^a, Cai, Xiaodian ^a, Teng, Jingyan ^a, Liu, Yuqiang ^a, Zhao, Yunxiang ^b, Wu, Xibo ^c, Li, Jiaqi ^a, Zhang, Zhe ^{a, ⁎}

Πηγή: In animal June 2023 17(6)

Breed identification using breed-informative SNPs and machine learning based on whole genome sequence data and SNP chip data

Συγγραφείς: Changheng Zhao, Dan Wang, Jun Teng, Cheng Yang, Xinyi Zhang, Xianming Wei, Qin Zhang

Πηγή: Journal of Animal Science and Biotechnology, Vol 14, Iss 1, Pp 1-13 (2023)

Θεματικοί όροι: Breed identification, Breed-informative SNPs, Genomic breed composition, Machine learning, Whole genome sequence data, Animal culture, SF1-1100, Veterinary medicine, SF600-1100

Περιγραφή αρχείου: electronic resource

Relation: https://doaj.org/toc/2049-1891

Σύνδεσμος πρόσβασης: https://doaj.org/article/e8e760fbca104921a194d750d708e124

Multi-line ssGBLUP evaluation using preselected markers from whole-genome sequence data in pigs

Συγγραφείς: Jang, Sungbong, Ros Freixedes, Roger, Hickey , John M., Chen, Ching-Yi, Herring, William O., Holl, Justin, Misztal, Ignacy, Lourenco, Daniela

Πηγή: Front Genet
Repositori Obert UdL
instname
Frontiers in Genetics, Vol 14 (2023)
Jang, S, Ros-Freixedes, R, Hickey, J M, Chen, C-Y, Herring, W O, Holl, J, Misztal, I & Lourenco, D 2023, 'Multi-line ssGBLUP evaluation using preselected markers from whole-genome sequence data in pigs', Frontiers in Genetics, vol. 14, 1163626, pp. 1-17. https://doi.org/10.3389/fgene.2023.1163626

Θεματικοί όροι: marker preselection, ssGBLUP, Multi-line evaluation, Unknown parent groups, unknown parent groups, Whole-genome sequence data, metafounders, Genetics, whole-genome sequence data, QH426-470, multi-line evaluation, Marker preselection

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/37252662
https://doaj.org/article/4e300998e1394d998658c19511691216
https://www.pure.ed.ac.uk/ws/files/351414313/fgene_14_1163626.pdf
https://doi.org/10.3389/fgene.2023.1163626
https://hdl.handle.net/20.500.11820/421fb5c9-60ca-4040-bbb5-8e4f6169b05b
https://www.research.ed.ac.uk/en/publications/421fb5c9-60ca-4040-bbb5-8e4f6169b05b

Insights into invasive species from whole‐genome resequencing

Συγγραφείς: North, Henry L, McGaughran, Angela, Jiggins, Chris D

Συνεισφορές: DSpace at Cambridge pro (8.1)

Πηγή: Molecular Ecology. 30:6289-6308

Θεματικοί όροι: 0301 basic medicine, 0303 health sciences, Genome, population genomics, adaptation, Genomics, Sequence Analysis, DNA, 15. Life on land, invasive species, 03 medical and health sciences, weeds, Humans, whole-genome sequence data, Introduced Species, hybridization, Ecosystem

Περιγραφή αρχείου: application/pdf; text/xml

Σύνδεσμος πρόσβασης: https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/mec.15999
https://pubmed.ncbi.nlm.nih.gov/34041794

Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review

Συγγραφείς: Diallo, Kanny ^{a, b}, Feteh, Vitalis F. ^{a, j}, Ibe, Lilian ^{a, j}, Antonio, Martin ^{c, k}, Caugant, Dominique A. ^d, du Plessis, Mignon ^e, Deghmane, Ala-Eddine ^f, Feavers, Ian M. ^a, Fernandez, Katya ^g, Fox, LeAnne M. ^h, Rodrigues, Charlene M.C. ^{a, i}, Ronveaux, Olivier ^g, Taha, Muhamed-Kheir ^f, Wang, Xin ^h, Brueggemann, Angela B. ^j, Maiden, Martin C.J. ^a, Harrison, Odile B. ^{a, ⁎}

Πηγή: In EBioMedicine March 2021 65

Genome-Wide Association Study of Insertions and Deletions Identified Novel Loci Associated with Milk Production Traits in Dairy Cattle

Συγγραφείς: Lu Zhao, Jun Teng, Chao Ning, Qin Zhang

Πηγή: Animals, Vol 14, Iss 24, p 3556 (2024)

Θεματικοί όροι: INDEL-based GWAS, whole-genome sequence data, milk production traits, dairy cattle, Veterinary medicine, SF600-1100, Zoology, QL1-991

Relation: https://www.mdpi.com/2076-2615/14/24/3556; https://doaj.org/toc/2076-2615; https://doaj.org/article/47630cb54850421a9f55ef3d5d741c6b

Διαθεσιμότητα: https://doi.org/10.3390/ani14243556
https://doaj.org/article/47630cb54850421a9f55ef3d5d741c6b

Optimizing genomic prediction model given causal genes in a dairy cattle population

Συγγραφείς: Teng, Jinyan ¹, Huang, Shuwen ¹, Chen, Zitao ¹, Gao, Ning ², Ye, Shaopan ¹, Diao, Shuqi ¹, Ding, Xiangdong ³, Yuan, Xiaolong ¹, Zhang, Hao ¹, Li, Jiaqi ¹, Zhang, Zhe ^{1, *}

Πηγή: In Journal of Dairy Science November 2020 103(11):10299-10310

Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs

Συγγραφείς: Jang, Sungbong, Ros-Freixedes, Roger, Hickey, John M., Chen, Ching-Yi, Holl, Justin, Herring, William O., Misztal, Ignacy, Lourenco, Daniela

Συνεισφορές: BMC, BMC

Πηγή: Genet Sel Evol
Repositori Obert UdL
instname
Genetics Selection Evolution, Vol 55, Iss 1, Pp 1-14 (2023)
Jang, S, Ros-Freixedes, R, Hickey, J M, Chen, C-Y, Holl, J, Herring, W O, Misztal, I & Lourenco, D 2023, 'Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs', Genetics Selection Evolution, vol. 55, no. 1, 55, pp. 55. https://doi.org/10.1186/s12711-023-00831-0

Θεματικοί όροι: 2. Zero hunger, Swine/genetics, Genome, Genotype, Genètica animal, Swine, Whole-genome sequence data, Genomics, QH426-470, SF1-1100, Polymorphism, Single Nucleotide, Genomics/methods, Animal culture, [SDV] Life Sciences [q-bio], Phenotype, Porcs, Genome-Wide Association Study/methods, Genetics, Animals, Research Article, Genome-Wide Association Study

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/37495982
https://doaj.org/article/28cdcd2260864b89960a349718dc62ee

Population genomics of East Asian ethnic groups

Συγγραφείς: Ziqing Pan, Shuhua Xu

Πηγή: Hereditas, Vol 157, Iss 1, Pp 1-10 (2020)

Θεματικοί όροι: Population genetics, Whole-genome sequence data, East Asian, Evolutionary forces, Genetics, QH426-470

Περιγραφή αρχείου: electronic resource

Relation: https://doaj.org/toc/1601-5223

Σύνδεσμος πρόσβασης: https://doaj.org/article/9e65d8706c224e4099e9a795f66b125a

An Efficient Exact Algorithm for Identifying Hybrids Using Population Genomic Sequences

Συγγραφείς: Chakraborty, Sneha

Θεματικοί όροι: Biostatistics, Bayesian Inference, conservation genetics, hybridization, recombination, whole-genome sequence data

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://escholarship.org/uc/item/1m53s12k
https://escholarship.org/content/qt1m53s12k/qt1m53s12k.pdf

Presentation_1_Whole Genome Analysis Detects the Emergence of a Single Salmonella enterica Serovar Chester Clone in Japan’s Kanto Region.PPTX

Συγγραφείς: Naoshi Ando, Tsuyoshi Sekizuka, Eiji Yokoyama, Yoshiyuki Aihara, Noriko Konishi, Yuko Matsumoto, Kumiko Ishida, Koo Nagasawa, Nathalie Jourdan-Da Silva, Motoi Suzuki, Hirokazu Kimura, Simon Le Hello, Koichi Murakami, Makoto Kuroda, Shinichiro Hirai, Setsuko Fukaya

Θεματικοί όροι: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, Salmonella Chester, emerging, molecular epidemiological analysis, population genetic analysis, whole genome sequence data, single-nucleotide polymorphisms, selection pressure

Relation: https://figshare.com/articles/presentation/Presentation_1_Whole_Genome_Analysis_Detects_the_Emergence_of_a_Single_Salmonella_enterica_Serovar_Chester_Clone_in_Japan_s_Kanto_Region_PPTX/15059220

Διαθεσιμότητα: https://doi.org/10.3389/fmicb.2021.705679.s001
https://figshare.com/articles/presentation/Presentation_1_Whole_Genome_Analysis_Detects_the_Emergence_of_a_Single_Salmonella_enterica_Serovar_Chester_Clone_in_Japan_s_Kanto_Region_PPTX/15059220

Short communication: Genomic prediction using imputed whole-genome sequence variants in Brown Swiss Cattle

Συγγραφείς: Frischknecht, Mirjam ^{*, †, 1}, Meuwissen, Theodorus H.E. ^‡, Bapst, Beat ^*, Seefried, Franz R. ^*, Flury, Christine ^†, Garrick, Dorian ^§, Signer-Hasler, Heidi ^†, Stricker, Christian ^#, Bieber, Anna ^¶, Fries, Ruedi ^**, Russ, Ingolf ^††, Sölkner, Johann ^‡‡, Bagnato, Alessandro ^§§, Gredler-Grandl, Birgit ^*

Πηγή: In Journal of Dairy Science February 2018 101(2):1292-1296

An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions

Συγγραφείς: Jay, Flora, Boitard, Simon, Austerlitz, Frédéric

Συνεισφορές: Jay, Flora, Austerlitz, Frederic, Laboratoire de Recherche en Informatique (LRI), Université Paris-Sud - Paris 11 (UP11)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Eco-Anthropologie et Ethnobiologie (EAE), Muséum national d'Histoire naturelle (MNHN)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Génétique Physiologie et Systèmes d'Elevage (GenPhySE), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT), ANR-12-BSV7-0012,demochips,Inférence de l'histoire démographique à partie des grands jeux de données de polymorphisme A.D.N.(2012)

Πηγή: Molecular Biology and Evolution. 36:1565-1579

Θεματικοί όροι: 0301 basic medicine, population genetic, 0303 health sciences, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Models, Genetic, Whole Genome Sequencing, Genome, Human, Human Migration, Bayes Theorem, demographic inference, human expansion, 03 medical and health sciences, Genetics, Population, [SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Humans, whole-genome sequence data, [MATH.MATH-ST] Mathematics [math]/Statistics [math.ST], approximate bayesian computation

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://www.biorxiv.org/content/biorxiv/early/2018/09/17/419002.full.pdf
https://pubmed.ncbi.nlm.nih.gov/30785202

Whole Genome Analysis Detects the Emergence of a Single Salmonella enterica Serovar Chester Clone in Japan’s Kanto Region

Συγγραφείς: Naoshi Ando, Tsuyoshi Sekizuka, Eiji Yokoyama, Yoshiyuki Aihara, Noriko Konishi, Yuko Matsumoto, Kumiko Ishida, Koo Nagasawa, Nathalie Jourdan-Da Silva, Motoi Suzuki, Hirokazu Kimura, Simon Le Hello, Koichi Murakami, Makoto Kuroda, Shinichiro Hirai, Setsuko Fukaya

Πηγή: Frontiers in Microbiology, Vol 12 (2021)

Θεματικοί όροι: Salmonella Chester, emerging, molecular epidemiological analysis, population genetic analysis, whole genome sequence data, single-nucleotide polymorphisms, Microbiology, QR1-502

Περιγραφή αρχείου: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.705679/full; https://doaj.org/toc/1664-302X

Σύνδεσμος πρόσβασης: https://doaj.org/article/01068042cfdd44e7a3bce6a3432cddf2

The Rare-Variant Generalized Disequilibrium Test for Association Analysis of Nuclear and Extended Pedigrees with Application to Alzheimer Disease WGS Data

Συγγραφείς: He, Zongxiao ¹, Zhang, Di ¹, Renton, Alan E. ², Li, Biao ¹, Zhao, Linhai ¹, Wang, Gao T. ^{1, 4}, Goate, Alison M. ², Mayeux, Richard ³, Leal, Suzanne M. ^{1, ∗}

Πηγή: In The American Journal of Human Genetics 2 February 2017 100(2):193-204