Search Results - "multiple structural alignment"

1

Academic Journal

Identification of Structural Determinants Essential for the Catalytic Activity of Plant Histone Deacetylases

Authors: Stykhylias, M. M.^{Aff1, IDS0095452726020088_cor1}, Rayevsky, O. V.^Aff1, Blume, Ya. B.^Aff1

Source: Cytology and Genetics. 60(2):154-167

2

eBook

Speedup of RNA Pseudoknotted Secondary Structure Recurrence Computation with the Four-Russians Method

Authors: Frid, Yelena^Aff17, Gusfield, Dan^Aff17

Contributors: Hutchison, David, editor^Aff1, Kanade, Takeo, editor^Aff2, Kittler, Josef, editor^Aff3, Kleinberg, Jon M., editor^Aff4, Mattern, Friedemann, editor^Aff5, Mitchell, John C., editor^Aff6, Naor, Moni, editor^Aff7, Nierstrasz, Oscar, editor^Aff8, Pandu Rangan, C., editor^Aff9, Steffen, Bernhard, editor^Aff10, Sudan, Madhu, editor^Aff11, Terzopoulos, Demetri, editor^Aff12, Tygar, Doug, editor^Aff13, Vardi, Moshe Y., editor^Aff14, Weikum, Gerhard, editor^Aff15, Lin, Guohui, editor^Aff16

Source: Combinatorial Optimization and Applications : 6th International Conference, COCOA 2012, Banff, AB, Canada, August 5-9, 2012. Proceedings. 7402:176-187

3

eBook

Exact Pattern Matching for RNA Structure Ensembles

Authors: Schmiedl, Christina^Aff20, Möhl, Mathias^Aff20, Heyne, Steffen^Aff20, Amit, Mika^Aff21, Landau, Gad M.^{Aff21, Aff22}, Will, Sebastian^{Aff20, Aff23}, Backofen, Rolf^{Aff20, Aff24}

Contributors: Hutchison, David, editor^Aff1, Kanade, Takeo, editor^Aff2, Kittler, Josef, editor^Aff3, Kleinberg, Jon M., editor^Aff4, Mattern, Friedemann, editor^Aff5, Mitchell, John C., editor^Aff6, Naor, Moni, editor^Aff7, Nierstrasz, Oscar, editor^Aff8, Pandu Rangan, C., editor^Aff9, Steffen, Bernhard, editor^Aff10, Sudan, Madhu, editor^Aff11, Terzopoulos, Demetri, editor^Aff12, Tygar, Doug, editor^Aff13, Vardi, Moshe Y., editor^Aff14, Weikum, Gerhard, editor^Aff15, Istrail, Sorin, editor^Aff16, Pevzner, Pavel, editor^Aff17, Waterman, Michael S., editor^Aff18, Chor, Benny, editor^Aff19

Source: Research in Computational Molecular Biology : 16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings. 7262:245-260

4

Academic Journal

Approximation of RNA multiple structural alignment

Authors: Marcin Kubica 0001, Romeo Rizzi, Stéphane Vialette, Tomasz Walen

Contributors: Vialette, Stéphane, Lewenstein Moshe and Valiente Gabriel

Source: Lecture Notes in Computer Science ISBN: 9783540354550

Subject Terms: Largest nested linear subgraph problem, linear graphs, Linear graphs, Analysis of algorithms and problem complexity, 0211 other engineering and technologies, [INFO.INFO-DS] Computer Science [cs]/Data Structures and Algorithms [cs.DS], 0102 computer and information sciences, 02 engineering and technology, Protein sequences, DNA sequences, largest nested linear subgraph problem, Algorithms on strings, 01 natural sciences, Theoretical Computer Science, Linear graphs, Largest nested linear subgraph problem, RNA structural alignment, Computational Theory and Mathematics, Graph algorithms (graph-theoretic aspects), Graph theory (including graph drawing) in computer science, Discrete Mathematics and Combinatorics, RNA structural alignment, non-coding RNA (ncRNA), multiple structural alignment, nested linear subgraph, Max-NLS, algorithm

File Description: application/xml

Access URL: https://hal.science/hal-00620291v1
https://zbmath.org/5994308
https://doi.org/10.1016/j.jda.2010.03.002
https://hal.science/hal-00619801v1
https://hdl.handle.net/11562/409566
https://doi.org/10.1007/11780441_20
http://www.springerlink.com/content/jxp47x45j96w5864/

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5

eBook

MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces

Authors: Shulman-Peleg, Alexandra^Aff24, Shatsky, Maxim^Aff24, Nussinov, Ruth^{Aff25, Aff26}, Wolfson, Haim J.^Aff24

Contributors: Hutchison, David, editor^Aff1, Kanade, Takeo, editor^Aff2, Kittler, Josef, editor^Aff3, Kleinberg, Jon M., editor^Aff4, Mattern, Friedemann, editor^Aff5, Mitchell, John C., editor^Aff6, Naor, Moni, editor^Aff7, Nierstrasz, Oscar, editor^Aff8, Pandu Rangan, C., editor^Aff9, Steffen, Bernhard, editor^Aff10, Sudan, Madhu, editor^Aff11, Terzopoulos, Demetri, editor^Aff12, Tygar, Dough, editor^Aff13, Vardi, Moshe Y., editor^Aff14, Weikum, Gerhard, editor^Aff15, Istrail, Sorin, editor^Aff16, Pevzner, Pavel, editor^Aff17, Waterman, Michael, editor^Aff18, R. Berthold, Michael, editor^Aff19, Glen, Robert C., editor^Aff20, Diederichs, Kay, editor^Aff21, Kohlbacher, Oliver, editor^Aff22, Fischer, Ingrid, editor^Aff23

Source: Computational Life Sciences : First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005. Proceedings. 3695:91-103

6

eBook

The Cenancestor and Its Contemporary Biological Relics: The Case of Nucleic Acid Polymerases

Authors: Delaye, Luis^Aff5, Vázquez, Héctor^Aff5, Lazcano, Antonio^Aff5

Contributors: Chela-Flores, JuliÁn, editor^{Aff1, Aff2}, Owen, Tobias, editor^Aff3, Raulin, François, editor^Aff4

Source: First Steps in the Origin of Life in the Universe : Proceedings of the Sixth Trieste Conference on Chemical Evolution Trieste, Italy 18–22 September, 2000. :223-230

7

eBook

Common Structural Elements in the Architecture of the Cofactor-Binding Domains in Unrelated Families of Pyridoxal Phosphate-Dependent Enzymes

Authors: Denesyuk, A. I.^Aff3, Denessiouk, K. A.^{Aff4, Aff5}, Lehtonen, J. V.^{Aff4, Aff5}, Korpela, T.^Aff3, Johnson, M. S.^{Aff4, Aff5}

Contributors: Iriarte, Ana, editor^Aff1, Martinez-Carrion, Marino, editor^Aff1, Kagan, Herbert M., editor^Aff2

Source: Biochemistry and Molecular Biology of Vitamin B6 and PQQ-dependent Proteins. :123-128

8

eBook

Protein Fold Families and Structural Motifs

Authors: Orengo, C. A.^Aff2, Flores, T. P.^{Aff2, Aff3}, Taylor, W. R.^Aff3, Thornton, J. M.^Aff2

Contributors: Doniach, Sebastian, editor^Aff1

Source: Statistical Mechanics, Protein Structure, and Protein Substrate Interactions. 325:253-275

9

Academic Journal

An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments

Authors: Yang, An-Suei ^{1, 2, *, 2}, Honig, Barry ^{1, 2, *}

Source: In Journal of Molecular Biology 18 August 2000 301(3):691-711

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10

Conference

Approximation of RNA Multiple Structural Alignment

Authors: Kubica M., Vialette S., Walen T., RIZZI, ROMEO

Contributors: Moshe Lewenstein, Gabriel Valiente, Kubica, M., Rizzi, Romeo, Vialette, S., Walen, T.

Subject Terms: non-coding RNA (ncRNA), multiple structural alignment, nested linear subgraph, Max-NLS, algorithm

File Description: STAMPA

Relation: info:eu-repo/semantics/altIdentifier/isbn/3540354557; info:eu-repo/semantics/altIdentifier/wos/WOS:000239421700020; ispartofbook:Lecture Notes in Computer Science 4009; Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006; volume:4009; firstpage:211; lastpage:222; numberofpages:12; alleditors:Moshe Lewenstein, Gabriel Valiente; https://hdl.handle.net/11562/409566; http://www.springerlink.com/content/jxp47x45j96w5864/

Availability: https://hdl.handle.net/11562/409566
https://doi.org/10.1007/11780441_20
http://www.springerlink.com/content/jxp47x45j96w5864/

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11

Dissertation/ Thesis

Structural similarity detection methods: characterisation of conserved motifs in protein structure families for genome annotation ; Méthodes de détection des similarités structurales : caractérisation des motifs conservés dans les familles de structures pour l'annotation des génomes

Authors: Carpentier, Mathilde

Contributors: Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université Pierre et Marie Curie (Paris 6), Sorbonne Universités, Joël Pothier, Pierre Netter(Pierre.Netter@upmc.fr)

Source: https://hal.science/tel-03959695 ; Bio-informatique [q-bio.QM]. Université Pierre et Marie Curie (Paris 6), Sorbonne Universités, 2005. Français. ⟨NNT : ⟩.

Subject Terms: protein structural classification, protein structural families, search for structural common patterns, multiple structural alignment, structural alignment, Protein structure, Structure des protéines, alignement structural, alignement structural multiple, recherche de motifs structuraux communs, classification des structures protéiques, familles structurales des protéines, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy

Availability: https://hal.science/tel-03959695
https://hal.science/tel-03959695v1/document
https://hal.science/tel-03959695v1/file/These.pdf

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12

Dissertation/ Thesis

Methods for detecting structural similarities: characterisation of conserved motifs within structural families for genome annotation ; Méthodes de détection des similarités structurales : caractérisation des motifs conservés dans les familles de structures pour l’annotation des génomes

Authors: Carpentier, Mathilde

Contributors: Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Atelier de BioInformatique (ABI), Sorbonne Université (SU), Université Pierre et Marie Curie (Paris VI), Dr Joël Pothier, Pr Pierre Netter

Source: https://hal.sorbonne-universite.fr/tel-05711041 ; Bio-informatique [q-bio.QM]. Université Pierre et Marie Curie (Paris VI), 2005. Français. ⟨NNT : 2005PA066571⟩.

Subject Terms: Protein structure, structural alignment, multiple structural alignment, search for structural common patterns, protein structural classification, Structure des protéines, alignement structural, alignement structural multiple, recherche de motifs structuraux communs, classification des structures protéiques, familles structurales des protéines, protein structural families, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy