Models and Algorithms for Equilibrium Analysis of Mixed-Material Nucleic Acid Systems

Authors: Nanjundiah, Avinash, Fornace, Mark E, Schulte, Samuel J, Pierce, Niles A

Source: ACS Synthetic Biology. 15(1)

Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 31 Biological Sciences (for-2020), Genetics (rcdc), Bioengineering (rcdc), Generic health relevance (hrcs-hc), Algorithms (mesh), RNA (mesh), DNA (mesh), Software (mesh), Base Pairing (mesh), Thermodynamics (mesh), Nucleic Acid Conformation (mesh), RNA, DNA, 2 ' OMe-RNA, mixedmaterials, hybrid case, chimeric case, complex ensemble, test tube ensemble, salt correction, sodium, dynamic programming algorithm, complexpartition function, equilibrium base-pairing probabilities, equilibrium complex concentrations, minimum free energysecondary structure, Boltzmann-sampled secondary structures, NUPACK, DNA (mesh), RNA (mesh), Nucleic Acid Conformation (mesh), Base Pairing (mesh), Algorithms (mesh), Thermodynamics (mesh), Software (mesh), 2′OMe-RNA, Boltzmann-sampled secondary structures, DNA, NUPACK, RNA, chimeric case, complex ensemble, complex partition function, dynamic programming algorithm, equilibrium base-pairing probabilities, equilibrium complex concentrations, hybrid case, minimum free energy secondary structure, mixed materials, salt correction, sodium, test tube ensemble, Algorithms (mesh), RNA (mesh), DNA (mesh), Software (mesh), Base Pairing (mesh), Thermodynamics (mesh), Nucleic Acid Conformation (mesh), 0304 Medicinal and Biomolecular Chemistry (for), 0601 Biochemistry and Cell Biology (for), 0903 Biomedical Engineering (for), 3101 Biochemistry and cell biology (for-2020), 3102 Bioinformatics and computational biology (for-2020)

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