How mandibular and hyoid morphology alters tongue muscle architecture in healthy adults: An anatomical atlas and statistical shape model of the tongue

Authors: Lloyd, RA, Dissanayake, E, Jugé, L, Bolsterlee, B, Ball, IK, Bilston, LE

Source: urn:ISSN:0010-4825 ; urn:ISSN:1879-0534 ; Computers in Biology and Medicine, 189, 110006-110006

Subject Terms: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 4203 Health Services and Systems, 42 Health Sciences, 46 Information and Computing Sciences, 4601 Applied Computing, Biomedical Imaging, Dental/Oral and Craniofacial Disease, Clinical Research, Humans, Tongue, Male, Female, Adult, Hyoid Bone, Mandible, Magnetic Resonance Imaging, Models, Anatomic, Young Adult, Diffusion Magnetic Resonance Imaging, DWI, MRI, Muscle architecture, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 4203 Health Services and Systems, anzsrc-for: 42 Health Sciences, anzsrc-for: 46 Information and Computing Sciences, anzsrc-for: 4601 Applied Computing

File Description: application/pdf

Relation: https://hdl.handle.net/1959.4/104552; https://doi.org/10.1016/j.compbiomed.2025.110006

Availability: https://hdl.handle.net/1959.4/104552
https://unsworks.unsw.edu.au/bitstreams/c5e53fcc-256f-485d-9ea2-bde0f2ddc61f/download
https://doi.org/10.1016/j.compbiomed.2025.110006

Metabolic and mitochondria alterations induced by SARS‐CoV‐2 accessory proteins ORF3a, ORF9b, ORF9c and ORF10

Authors: López-Ayllón, BD, Marin, S, Fernández, MF, García-García, T, Fernández-Rodríguez, R, de Lucas-Rius, A, Redondo, N, Mendoza-García, L, Foguet, C, Grigas, J, Calvet, A, Villalba, JM, Gómez, MJR, Megías, D, Mandracchia, B, Luque, D, Lozano, JJ, Calvo, C, Herrán, UM, Thomson, TM, Garrido, JJ, Cascante, M, Montoya, M, Luque Buzo, Daniel

Contributors: European Commission, Junta de Andalucía, Ministerio de Ciencia e Innovación (España), Generalitat de Catalunya, Instituto de Salud Carlos III, López-Ayllón, Blanca D. [0000-0003-3889-3644], Marin, Silvia [0000-0003-0693-2207], García-García, Tránsito [0000-0003-3708-0908], Fernández-Rodríguez, Raúl [0000-0001-8301-0244], Lucas-Rius, Ana de [0000-0003-1920-2414], Redondo, Natalia [0000-0001-9356-8102], Mendoza, Laura [0000-0002-9964-8127], Foguet, Carles [0000-0001-8494-9595], Grigas, Juozas [0000-0003-2450-5700], Villalba, José Manuel [0000-0001-8554-3802], Rodríguez Gómez, María Josefa [0009-0007-1709-9886], Megías, Diego [0000-0003-0755-0518], Mandracchia, Biagio [0000-0002-4583-4733], Calvo, Cristina [0000-0002-6503-3423], Thomson, Timothy M. [0000-0002-4670-9440], Garrido, Juan J. [0000-0001-6592-2231], Cascante, Marta [0000-0002-2062-4633], Montoya, María [0000-0002-5703-7360], Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72], DSpace at Cambridge pro (8.1)

Source: Articles publicats en revistes (Bioquímica i Biomedicina Molecular)
Dipòsit Digital de la UB
Universidad de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)

Subject Terms: anzsrc-for: 1108 Medical Microbiology, Coronaviruses, ORF3a, ORF9c, ADN mitocondrial, 3101 Biochemistry and Cell Biology, ORF9b, Viroporin Proteins, Genome‐scale metabolic modeling, 3102 Bioinformatics and Computational Biology, transcriptomics, Open Reading Frames, Viral Proteins, ORF10, Genetics, 2.1 Biological and endogenous factors, Metabolomics, Humans, Viral Regulatory and Accessory Proteins, anzsrc-for: 31 Biological Sciences, Transcriptomics, Nutrition, genome‐scale metabolic modeling, SARS-CoV-2, anzsrc-for: 3101 Biochemistry and Cell Biology, COVID-19, 3 Good Health and Well Being, anzsrc-for: 3107 Microbiology, metabolomics, Mitochondrial DNA, Mitochondria, 3. Good health, anzsrc-for: 3207 Medical microbiology, mitochondria, Infectious Diseases, Emerging Infectious Diseases, anzsrc-for: 0605 Microbiology, Metabolòmica, anzsrc-for: 3202 Clinical sciences, A549 Cells, anzsrc-for: 3102 Bioinformatics and Computational Biology, Transcriptome, 31 Biological Sciences

File Description: application/pdf; text/xml

Access URL: https://pubmed.ncbi.nlm.nih.gov/38949191
https://hdl.handle.net/2445/218002
http://hdl.handle.net/10261/363197

Topological barrier to Cas12a activation by circular DNA nanostructures facilitates autocatalysis and transforms DNA/RNA sensing

Authors: Deng, F, Li, Y, Yang, B, Sang, R, Deng, W, Kansara, M, Lin, F, Thavaneswaran, S, Thomas, DM, Goldys, EM

Source: Nat Commun
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)

Subject Terms: 0301 basic medicine, Science, Circular, RNA, Guide, CRISPR-Cas Systems, Article, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Genetics, anzsrc-for: 31 Biological Sciences, Cancer, 0303 health sciences, Helicobacter pylori, DNA, Nanostructures, Infectious Diseases, Ribonucleoproteins, RNA, anzsrc-for: 3102 Bioinformatics and Computational Biology, DNA, Circular, CRISPR-Cas Systems, Guide, 31 Biological Sciences, Biotechnology

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38443394
https://doaj.org/article/b1ba2e8000dc4de2a474801d83099626

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

Authors: Benjamin Kaminow, Sara Ballouz, Jesse Gillis, Alexander Dobin

Source: Genome Res

Subject Terms: Genome, Consensus, Genome, Human, Human Genome, Method, Genomics, 3105 Genetics, 3102 Bioinformatics and Computational Biology, anzsrc-for: 3105 Genetics, Cancer Genomics, anzsrc-for: 11 Medical and Health Sciences, Exome Sequencing, Genetics, anzsrc-for: 06 Biological Sciences, Humans, RNA-Seq, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Cancer, Human

File Description: application/pdf

Access URL: https://genome.cshlp.org/content/early/2022/03/07/gr.275613.121.full.pdf
https://pubmed.ncbi.nlm.nih.gov/35256454

Selective intrafascicular stimulation of myelinated and unmyelinated nerve fibers through a longitudinal electrode: A computational study

Authors: Wang, X, Zhang, Y, Guo, T, Wu, S, Zhong, J, Cheng, C, Sui, X

Source: urn:ISSN:0010-4825 ; urn:ISSN:1879-0534 ; Computers in Biology and Medicine, 176, 108556-108556

Subject Terms: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 4203 Health Services and Systems, 42 Health Sciences, 46 Information and Computing Sciences, 4601 Applied Computing, Neurosciences, Animals, Nerve Fibers, Myelinated, Unmyelinated, Rats, Electric Stimulation, Nanotubes, Carbon, Models, Neurological, Sciatic Nerve, Electrodes, Computational modeling, Intrafascicular electrical stimulation, Longitudinal electrode, Peripheral nerve, Selective activation, Unmyelinated C fiber, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 4203 Health Services and Systems, anzsrc-for: 42 Health Sciences, anzsrc-for: 46 Information and Computing Sciences

Relation: http://hdl.handle.net/1959.4/102145; https://doi.org/10.1016/j.compbiomed.2024.108556

Availability: http://hdl.handle.net/1959.4/102145
https://doi.org/10.1016/j.compbiomed.2024.108556

The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening

Authors: Patrick, Ralph, Naval-Sanchez, Marina, Deshpande, Nikita, Huang, Yifei, Zhang, Jingyu, Chen, Xiaoli, Yang, Ying, Tiwari, Kanupriya, Esmaeili, Mohammadhossein, Tran, Minh, Mohamed, Amin R, Wang, Binxu, Xia, Di, Ma, Jun, Bayliss, Jacqueline, Wong, Kahlia, Hun, Michael L, Sun, Xuan, Cao, Benjamin, Cottle, Denny L, Catterall, Tara, Barzilai-Tutsch, Hila, Troskie, Robin-Lee, Chen, Zhian, Wise, Andrea F, Saini, Sheetal, Soe, Ye Mon, Kumari, Snehlata, Sweet, Matthew J, Thomas, Helen E, Smyth, Ian M, Fletcher, Anne L, Knoblich, Konstantin, Watt, Matthew J, Alhomrani, Majid, Alsanie, Walaa, Quinn, Kylie M, Merson, Tobias D, Chidgey, Ann P, Ricardo, Sharon D, Yu, Di, Jardé, Thierry, Cheetham, Seth W, Marcelle, Christophe, Nilsson, Susan K, Nguyen, Quan, White, Melanie D, Nefzger, Christian M

Source: urn:ISSN:1550-4131 ; urn:ISSN:1932-7420 ; Cell Metabolism, 36, 8, 1858-1881.e23

Subject Terms: 3101 Biochemistry and Cell Biology, 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Genetics, Aging, Human Genome, 1.1 Normal biological development and functioning, Animals, Transcription Factor AP-1, Chromatin, Mice, Humans, Inbred C57BL, Binding Sites, AP-1, CTCF, cell identity, development, maturation, polycomb repressive complex 2, redistribution, transcription factors, anzsrc-for: 3101 Biochemistry and Cell Biology, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 31 Biological Sciences, anzsrc-for: 0601 Biochemistry and Cell Biology, anzsrc-for: 1101 Medical Biochemistry and Metabolomics, anzsrc-for: 3205 Medical biochemistry and metabolomics

Relation: http://hdl.handle.net/1959.4/102642; https://doi.org/10.1016/j.cmet.2024.06.006

Availability: http://hdl.handle.net/1959.4/102642
https://doi.org/10.1016/j.cmet.2024.06.006

Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues

Authors: Duy Pham, Xiao Tan, Brad Balderson, Jun Xu, Laura F. Grice, Sohye Yoon, Emily F. Willis, Minh Tran, Pui Yeng Lam, Arti Raghubar, Priyakshi Kalita-de Croft, Sunil Lakhani, Jana Vukovic, Marc J. Ruitenberg, Quan H. Nguyen

Source: Nat Commun
Nature Communications, Vol 14, Iss 1, Pp 1-25 (2023)

Subject Terms: Neural Networks, 1.1 Normal biological development and functioning, Science, Gene Expression Profiling, Bioengineering, Cell Communication, Article, 3102 Bioinformatics and Computational Biology, Computer, Networking and Information Technology R&D (NITRD), Genetics, 2.1 Biological and endogenous factors, Neural Networks, Computer, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, Gene Expression Profiling/methods, Transcriptome, Software, Algorithms, 31 Biological Sciences, Cancer

Access URL: https://pubmed.ncbi.nlm.nih.gov/38007580
https://doaj.org/article/90386dc9c14b4450ad2ce44635d342ec

The RNA Atlas expands the catalog of human non-coding RNAs

Authors: Justine Nuytens, Pavel Sumazin, Gary P. Schroth, Govardhan Anande, Marc R. Wilkins, Tom Taghon, Karim Vermaelen, Katrien Vanderheyden, Ting-Wen Chen, Francisco Avila Cobos, Yvan Saeys, Robrecht Cannoodt, Marieke Vromman, Nandan P. Deshpande, Jan Koster, Nele Nijs, Lucia Lorenzi, Scott Kuersten, Pieter Mestdagh, Jørgen Kjems, Jo Vandesompele, Aidan P. Tay, Tim De Meyer, Steve Lefever, Jasper Anckaert, Eric James de Bony, Ken R. Bracke, Thomas B. Hansen, Fien Gysens, Pieter-Jan Volders, Wim Trypsteen, Katleen De Preter, Tine Goovaerts, Ashwin Unnikrishnan, Hua-Sheng Chiu, Stephen M. Gross

Source: Lorenzi, L, Chiu, H S, Avila Cobos, F, Gross, S, Volders, P J, Cannoodt, R, Nuytens, J, Vanderheyden, K, Anckaert, J, Lefever, S, Tay, A P, de Bony, E J, Trypsteen, W, Gysens, F, Vromman, M, Goovaerts, T, Hansen, T B, Kuersten, S, Nijs, N, Taghon, T, Vermaelen, K, Bracke, K R, Saeys, Y, De Meyer, T, Deshpande, N P, Anande, G, Chen, T W, Wilkins, M R, Unnikrishnan, A, De Preter, K, Kjems, J, Koster, J, Schroth, G P, Vandesompele, J, Sumazin, P & Mestdagh, P 2021, 'The RNA Atlas expands the catalog of human non-coding RNAs', Nature Biotechnology, vol. 39, no. 11, pp. 1453-1465. https://doi.org/10.1038/s41587-021-00936-1
Nature Biotechnology

Subject Terms: RNA, Untranslated, Human Genome, Messenger, Untranslated, 3105 Genetics, 3. Good health, 3102 Bioinformatics and Computational Biology, anzsrc-for: 3105 Genetics, MicroRNAs, Genetics, 2.1 Biological and endogenous factors, RNA, Humans, Long Noncoding, RNA, Long Noncoding, Generic health relevance, RNA, Messenger, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, Transcriptome, 31 Biological Sciences, Biotechnology

Access URL: https://zenodo.org/record/5909808/files/s41587-021-00936-1.pdf
https://pubmed.ncbi.nlm.nih.gov/34140680
https://www.scilit.net/article/e8f72da1ec95db8d06ba219b76929e96?action=show-references
https://www.nature.com/articles/s41587-021-00936-1.pdf
https://www.narcis.nl/publication/RecordID/oai%3Apure.amc.nl%3Apublications%2F41219244-6b7d-4a10-9920-3776fc670878
https://scholar.nycu.edu.tw/zh/publications/the-rna-atlas-expands-the-catalog-of-human-non-coding-rnas
https://biblio.ugent.be/publication/8715077
https://europepmc.org/article/MED/34140680

Infectious disease mRNA vaccines and a review on epitope prediction for vaccine design

Authors: Cai, Xinhui, Li, Jiao Jiao, Liu, Tao, Brian, Oliver, Li, Jinyan

Source: Briefings in Functional Genomics. 20:289-303

Subject Terms: 0301 basic medicine, Coronaviruses, Messenger, Coronaviruses Vaccines, Machine Learning, 3102 Bioinformatics and Computational Biology, epitope prediction, Epitopes, Neoplasms, Machine Learning and Artificial Intelligence, anzsrc-for: 31 Biological Sciences, Vaccines, 0303 health sciences, Zika Virus Infection, other infectious diseases, 3 Good Health and Well Being, 3. Good health, mRNA vaccines, Infectious Diseases, Networking and Information Technology R&D (NITRD), 3.4 Vaccines, Virus Diseases, Influenza Vaccines, Patient Safety, anzsrc-for: 3102 Bioinformatics and Computational Biology, Infection, Algorithms, Biotechnology, COVID-19 Vaccines, anzsrc-for: 0604 Genetics, Bioengineering, Dengue Vaccines, Cancer Vaccines, Vaccine Related, 03 medical and health sciences, Biodefense, Diabetes Mellitus, Respiratory Syncytial Virus Vaccines, Animals, Humans, RNA, Messenger, Pandemics, SARS-CoV-2, Prevention, COVID-19, Computational Biology, Vector-Borne Diseases, Emerging Infectious Diseases, Communicable Disease Control, RNA, Immunization, Software, 31 Biological Sciences

File Description: application/pdf

Access URL: https://academic.oup.com/bfg/article-pdf/20/5/289/40349787/elab027.pdf
https://pubmed.ncbi.nlm.nih.gov/34089044
https://pubmed.ncbi.nlm.nih.gov/34089044/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8194884
https://europepmc.org/article/PMC/PMC8194884
https://academic.oup.com/bfg/article/20/5/289/6292285
https://search.bvsalud.org/global-literature-on-novel-coronavirus-2019-ncov/resource/en/covidwho-1258749

Transcript- and annotation-guided genome assembly of the European starling

Authors: Katarina C. Stuart, Richard J. Edwards, Yuanyuan Cheng, Wesley C. Warren, David W. Burt, William B. Sherwin, Natalie R. Hofmeister, Scott J. Werner, Gregory F. Ball, Melissa Bateson, Matthew C. Brandley, Katherine L. Buchanan, Phillip Cassey, David F. Clayton, Tim De Meyer, Simone L. Meddle, Lee A. Rollins

Source: Mol Ecol Resour
Stuart, K, Edwards, R, Cheng, Y, Warren, W, Burt, D, Sherwin, W, Hofmeister, N, Werner, S, Ball, G F, Bateson, M, Brandley, M, Buchanan, K L, Cassey, P, Clayton, D F, De Meyer, T, Meddle, S & Rollins, L 2022, ' Transcript-and annotation-guided genome assembly of the European starling ', Molecular Ecology Resources, vol. 22, no. 8, pp. 3141-3160 . https://doi.org/10.1111/1755-0998.13679
MOLECULAR ECOLOGY RESOURCES

Subject Terms: 0301 basic medicine, Sturnus vulgaris, genome annotation, assessment, 0206 medical engineering, 02 engineering and technology, full-length transcripts, 3105 Genetics, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Genetics, Animals, anzsrc-for: 31 Biological Sciences, genome, Genome, Human Genome, RESOURCE ARTICLES, Australia, Biology and Life Sciences, Molecular Sequence Annotation, Genomics, 15. Life on land, STURNUS-VULGARIS, PAN-GENOME, genome assessment, EVOLUTION, anzsrc-for: 3105 Genetics, INSIGHTS, FOS: Biological sciences, DISCOVERY, POPULATION TRENDS, Starlings, anzsrc-for: 06 Biological Sciences, genome assembly, VISUALIZATION, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Biotechnology

File Description: application/pdf

Access URL: https://www.biorxiv.org/content/biorxiv/early/2021/05/26/2021.04.07.438753.full.pdf
https://pubmed.ncbi.nlm.nih.gov/35763352
https://www.biorxiv.org/content/biorxiv/early/2021/04/08/2021.04.07.438753.full.pdf
https://www.biorxiv.org/content/10.1101/2021.04.07.438753v1
https://europepmc.org/article/PPR/PPR308684
https://hdl.handle.net/20.500.11820/dc3244ac-66ae-492a-a580-5587fe5bfd4f
https://www.pure.ed.ac.uk/ws/files/286856300/Molecular_Ecology_Resources_2022_Stuart_Transcript_and_annotation_guided_genome_assembly_of_the_European_starling.pdf
https://biblio.ugent.be/publication/01GSFWE7672J6V4NV5EZGAGVRJ
http://hdl.handle.net/1854/LU-01GSFWE7672J6V4NV5EZGAGVRJ
http://doi.org/10.1111/1755-0998.13679
https://biblio.ugent.be/publication/01GSFWE7672J6V4NV5EZGAGVRJ/file/01GSG0WK7A7RAVS9PQQHFHV9DY

An algebraic model for inversion and deletion in bacterial genome rearrangement

Authors: Clark, C, Jonušas, J, Mitchell, JD, Francis, A

Contributors: University of St Andrews.Statistics, University of St Andrews.Pure Mathematics

Source: J Math Biol

Subject Terms: 0301 basic medicine, QH426 Genetics, anzsrc-for: 49 Mathematical sciences, Article, Deletion, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, XXXXXX - Unknown, FOS: Mathematics, Humans, 20M20, 92D15, 20M05, anzsrc-for: 31 Biological Sciences, QH426, Bacterial genomics, Phylogeny, MCC, Gene Rearrangement, Partial permutation, 0303 health sciences, Genome, Distance, anzsrc-for: 01 Mathematical Sciences, Bacterial, Inversion, Mathematics - Rings and Algebras, Biological Evolution, Phylogenetics, Infectious Diseases, Rings and Algebras (math.RA), Chromosome Inversion, anzsrc-for: 06 Biological Sciences, T-DAS, anzsrc-for: 3102 Bioinformatics and Computational Biology, Algorithms, Genome, Bacterial, 31 Biological Sciences

File Description: application/pdf; print

Access URL: https://pubmed.ncbi.nlm.nih.gov/37517046
http://arxiv.org/abs/2209.07963
https://hdl.handle.net/10023/28068

Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell

Authors: Bartolec, TK, Vázquez-Campos, X, Norman, A, Luong, C, Johnson, M, Payne, RJ, Wilkins, MR, Mackay, JP, Low, JKK, Vazquez Campos, Xabier

Source: Proc Natl Acad Sci U S A

Subject Terms: Proteomics, Proteome, 1.1 Normal biological development and functioning, protein–protein interactions, 3101 Biochemistry and Cell Biology, anzsrc-for: 34 Chemical Sciences, Mass Spectrometry, 3102 Bioinformatics and Computational Biology, 2.1 Biological and endogenous factors, Humans, anzsrc-for: 3401 Analytical Chemistry, anzsrc-for: 31 Biological Sciences, AlphaFold2, Molecular Biology, 34 Chemical Sciences, cross-linking mass spectrometry, anzsrc-for: 3101 Biochemistry and Cell Biology, Cryoelectron Microscopy, Biological Sciences, structural proteomics, protein structure prediction, Cross-Linking Reagents, 3401 Analytical Chemistry, Generic health relevance, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37071682

RLIM Is a Candidate Dosage-Sensitive Gene for Individuals with Varying Duplications of Xq13, Intellectual Disability, and Distinct Facial Features

Authors: Renee Carroll, Joris Andrieux, Raman Kumar, Jozef Gecz, Rani Sachdev, Sharron Townshend, Bénédicte Demeer, Salam Hadah Albarazi, Marie Shaw, Elizabeth E. Palmer, Marybeth Hummel, Olivier Pichon, Rebecca Macintosh, Michelle Ward, Urwah Nawaz, Dale Wright, Erik C. Thorland, Bertrand Isidor, Fiona Haslam McKenzie, Cédric Le Caignec, Michael Field, Melanie Leffler, Andre E. Minoche, Edwin P. Kirk, Chris Troedson, Lucinda Murray, Cassandra K. Runke, Mark J. Cowley, Anja Ravine, Ann M. E. Bye, Nicola Foulds

Source: The American Journal of Human Genetics. 107:1157-1169

Subject Terms: Male, 0301 basic medicine, Gene Dosage, 3102 Bioinformatics and Computational Biology, chromosomal microarray, X Chromosome Inactivation, Chromosome Duplication, 2.1 Biological and endogenous factors, anzsrc-for: 31 Biological Sciences, Child, chromosomal duplication, whole genome sequencing, 0303 health sciences, Symporters, Middle Aged, Pedigree, Mental Health, Phenotype, NEXMIF, intellectual disability, Child, Preschool, Female, anzsrc-for: 3102 Bioinformatics and Computational Biology, Monocarboxylic Acid Transporters, Heterozygote, Adolescent, Intellectual and Developmental Disabilities (IDD), 1.1 Normal biological development and functioning, Ubiquitin-Protein Ligases, Mutation, Missense, autism, Mothers, Nerve Tissue Proteins, 3105 Genetics, Young Adult, 03 medical and health sciences, Clinical Research, Tonne-Kalscheuer syndrome, Intellectual Disability, Genetics, Humans, Preschool, RLIM, Hemizygote, Neurosciences, Australia, Brain Disorders, anzsrc-for: 3105 Genetics, Face, Mutation, anzsrc-for: 06 Biological Sciences, Missense, dosage sensitive gene, 31 Biological Sciences, Xq13

Access URL: http://www.cell.com/article/S0002929720303633/pdf
https://pubmed.ncbi.nlm.nih.gov/33159883
https://www.sciencedirect.com/science/article/abs/pii/S0002929720303633
https://research-repository.uwa.edu.au/en/publications/rlim-is-a-candidate-dosage-sensitive-gene-for-individuals-with-va
https://portal.sahmriresearch.org/en/publications/rlim-is-a-candidate-dosage-sensitive-gene-for-individuals-with-va
https://mayoclinic.pure.elsevier.com/en/publications/rlim-is-a-candidate-dosage-sensitive-gene-for-individuals-with-va
https://www.sciencedirect.com/science/article/pii/S0002929720303633
https://europepmc.org/article/PMC/PMC7820564

The oncofetal RNA-binding protein IGF2BP1 is a druggable, post-transcriptional super-enhancer of E2F-driven gene expression in cancer

Authors: Müller, S, Bley, N, Busch, B, Glaß, M, Lederer, M, Misiak, C, Fuchs, T, Wedler, A, Haase, J, Bertoldo, JB, Michl, P, Hüttelmaier, S

Source: Nucleic Acids Res

Subject Terms: 0301 basic medicine, 1.1 Normal biological development and functioning, 3101 Biochemistry and Cell Biology, Cell Line, Small Molecule Libraries, 3102 Bioinformatics and Computational Biology, Mice, 03 medical and health sciences, Rare Diseases, Cancer Genomics, anzsrc-for: 34 Chemical sciences, Cell Line, Tumor, Neoplasms, Genetics, 2.1 Biological and endogenous factors, Animals, Humans, anzsrc-for: 31 Biological Sciences, Molecular Biology, 3' Untranslated Regions, Cancer, Neoplastic, 0303 health sciences, Tumor, Human Genome, anzsrc-for: 3101 Biochemistry and Cell Biology, anzsrc-for: 05 Environmental Sciences, RNA-Binding Proteins, E2F Transcription Factors, 3. Good health, anzsrc-for: 41 Environmental sciences, Gene Expression Regulation, Neoplastic, Gene Expression Regulation, anzsrc-for: 06 Biological Sciences, Generic health relevance, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 08 Information and Computing Sciences, E2F1 Transcription Factor, 31 Biological Sciences, Biotechnology

File Description: application/pdf

Access URL: https://academic.oup.com/nar/article-pdf/48/15/8576/33697465/gkaa653.pdf
https://pubmed.ncbi.nlm.nih.gov/32761127
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7470957
https://pubmed.ncbi.nlm.nih.gov/32761127/
https://academic.oup.com/nar/article/48/15/8576/5881798
https://europepmc.org/articles/PMC7470957/

Restriction Enzyme Based Enriched L1Hs Sequencing (REBELseq): A Scalable Technique for Detection of Ta Subfamily L1Hs in the Human Genome

Authors: Rachel N Levinson, Wade H. Berrettini, Esin C. Namoglu, Richard C. Crist, Cynthia Shannon Weickert, Emilie Davila Perea, Glenn A. Doyle, Gustavo Turecki, Deborah C Mash, Andrew E. Weller, Alicia Pigeon, Benjamin C. Reiner

Source: G3 (Bethesda)
G3: Genes, Genomes, Genetics, Vol 10, Iss 5, Pp 1647-1655 (2020)

Subject Terms: 0301 basic medicine, Retroelements, anzsrc-for: 0604 Genetics, l1, QH426-470, Investigations, 3105 Genetics, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Genetics, Humans, l1hs, anzsrc-for: 31 Biological Sciences, 0303 health sciences, Genome, Genome, Human, Human Genome, High-Throughput Nucleotide Sequencing, anzsrc-for: 3101 Biochemistry and cell biology, anzsrc-for: 4905 Statistics, DNA Restriction Enzymes, L1, L1Hs, retrotransposons, anzsrc-for: 3105 Genetics, Retrotransposons, Long Interspersed Nucleotide Elements, anzsrc-for: 3102 Bioinformatics and Computational Biology, rebelseq, REBELseq, 31 Biological Sciences, Biotechnology, Human

File Description: application/pdf

Access URL: https://academic.oup.com/g3journal/article-pdf/10/5/1647/38825689/g3journal1647.pdf
https://pubmed.ncbi.nlm.nih.gov/32132168
https://doaj.org/article/b4f24c25c33048b8ad162a2ff355cb5b
https://europepmc.org/article/MED/32132168
https://www.g3journal.org/content/early/2020/03/04/g3.119.400613
https://pubmed.ncbi.nlm.nih.gov/32132168/
https://www.g3journal.org/content/10/5/1647
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7202019

Crosstalk of Phosphorylation and Arginine Methylation in Disordered SRGG Repeats of Saccharomyces cerevisiae Fibrillarin and Its Association with Nucleolar Localization

Authors: Smith, DL, Erce, MA, Lai, YW, Tomasetig, F, Hart-Smith, G, Hamey, JJ, Wilkins, MR

Source: Journal of Molecular Biology. 432:448-466

Subject Terms: Repetitive Sequences, Amino Acid, 0301 basic medicine, Protein-Arginine N-Methyltransferases, Saccharomyces cerevisiae Proteins, Chromosomal Proteins, Non-Histone, Amino Acid Motifs, Active Transport, Cell Nucleus, Nop1p, Saccharomyces cerevisiae, Protein Serine-Threonine Kinases, 3101 Biochemistry and Cell Biology, Arginine, Methylation, Repetitive Sequences, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Npl3p, Ribonucleoproteins, Small Nucleolar, Protein Phosphatase 1, Genetics, Serine, 2.1 Biological and endogenous factors, anzsrc-for: 31 Biological Sciences, anzsrc-for: 0304 Medicinal and Biomolecular Chemistry, Phosphorylation, Post-translational modifications (PTM), Small Nucleolar, Cell Nucleus, 0303 health sciences, anzsrc-for: 3101 Biochemistry and Cell Biology, Nuclear Proteins, RNA-Binding Proteins, Non-Histone, anzsrc-for: 3107 Microbiology, Active Transport, Yeast, Chromosomal Proteins, Repressor Proteins, Amino Acid, Ribonucleoproteins, anzsrc-for: 0605 Microbiology, 5.1 Pharmaceuticals, anzsrc-for: 0601 Biochemistry and Cell Biology, anzsrc-for: 3102 Bioinformatics and Computational Biology, Hmt1p, 31 Biological Sciences

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/31756331
https://www.sciencedirect.com/science/article/pii/S0022283619306667
https://researchers.mq.edu.au/en/publications/crosstalk-of-phosphorylation-and-arginine-methylation-in-disorder
https://pubag.nal.usda.gov/catalog/6765611
https://www.ncbi.nlm.nih.gov/pubmed/31756331

Histone H3-wild type diffuse midline gliomas with H3K27me3 loss are a distinct entity with exclusive EGFR or ACVR1 mutation and differential methylation of homeobox genes

Authors: Ajuyah, P, Mayoh, C, Lau, LMS, Barahona, P, Wong, M, Chambers, H, Valdes-Mora, F, Senapati, A, Gifford, AJ, D’Arcy, C, Hansford, JR, Manoharan, N, Nicholls, W, Williams, MM, Wood, PJ, Cowley, MJ, Tyrrell, V, Haber, M, Ekert, PG, Ziegler, DS, Khuong-Quang, DA, Valdes Mora, Fatima

Source: Sci Rep
Scientific Reports, Vol 13, Iss 1, Pp 1-13 (2023)

Subject Terms: Activin Receptors, Science, Type I, 32 Biomedical and Clinical Sciences, Methylation, 3105 Genetics, Article, Histones, 3102 Bioinformatics and Computational Biology, Cancer Genomics, Rare Diseases, anzsrc-for: 32 Biomedical and Clinical Sciences, Genetics, 2.1 Biological and endogenous factors, Homeobox, Humans, anzsrc-for: 31 Biological Sciences, Child, Cancer, anzsrc-for: 3211 Oncology and Carcinogenesis, Human Genome, Genes, Homeobox, Glioma, 3211 Oncology and Carcinogenesis, Brain Disorders, Brain Cancer, ErbB Receptors, anzsrc-for: 3105 Genetics, Genes, Mutation, Medicine, anzsrc-for: 3102 Bioinformatics and Computational Biology, Activin Receptors, Type I, 31 Biological Sciences, 4.2 Evaluation of markers and technologies

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/36882456
https://doaj.org/article/8e8fabf3268f4381b287194aa795890c

Dendritic Cell Density and Morphology Can Be Used to Differentiate Vernal Keratoconjunctivitis from Allergic Conjunctivitis

Authors: Tajbakhsh, Z, Golebiowski, B, Stapleton, F, Salouti, R, Nowroozzadeh, MH, Zamani, M, Briggs, N, Jalbert, I

Source: urn:ISSN:2218-273X ; Biomolecules, 13, 10, 1469

Subject Terms: 32 Biomedical and Clinical Sciences, 3212 Ophthalmology and Optometry, Eye Disease and Disorders of Vision, 2.1 Biological and endogenous factors, Inflammatory and immune system, Humans, Conjunctivitis, Allergic, Prospective Studies, Conjunctiva, Cornea, Dendritic Cells, allergic conjunctivitis, antigen capture capacity, dendritic cell, in vivo confocal microscopy, migratory capacity, vernal keratoconjunctivitis, anzsrc-for: 32 Biomedical and Clinical Sciences, anzsrc-for: 3212 Ophthalmology and Optometry, anzsrc-for: 0601 Biochemistry and Cell Biology, anzsrc-for: 3101 Biochemistry and cell biology, anzsrc-for: 3102 Bioinformatics and computational biology, anzsrc-for: 3206 Medical biotechnology

Relation: https://hdl.handle.net/1959.4/104480; https://doi.org/10.3390/biom13101469

Availability: https://hdl.handle.net/1959.4/104480
https://doi.org/10.3390/biom13101469

Novel Peptides with Dual Properties for Treating Pseudomonas aeruginosa Keratitis: Antibacterial and Corneal Wound Healing

Authors: Cappiello, F, Verma, S, Lin, X, Moreno, IY, Casciaro, B, Dutta, D, McDermott, AM, Willcox, M, Coulson-Thomas, VJ, Mangoni, ML

Source: urn:ISSN:2218-273X ; Biomolecules, 13, 7, 1028

Subject Terms: 32 Biomedical and Clinical Sciences, 3212 Ophthalmology and Optometry, Infectious Diseases, Physical Injury - Accidents and Adverse Effects, Eye Disease and Disorders of Vision, Wound Healing and Care, 5.1 Pharmaceuticals, Eye, Infection, Animals, Mice, Pseudomonas aeruginosa, Pseudomonas Infections, Keratitis, Anti-Bacterial Agents, Corneal Injuries, Peptides, Wound Healing, antimicrobial peptides, antimicrobial resistance, corneal infections, corneal wound healing, anzsrc-for: 32 Biomedical and Clinical Sciences, anzsrc-for: 3212 Ophthalmology and Optometry, anzsrc-for: 0601 Biochemistry and Cell Biology, anzsrc-for: 3101 Biochemistry and cell biology, anzsrc-for: 3102 Bioinformatics and computational biology, anzsrc-for: 3206 Medical biotechnology

File Description: application/pdf

Relation: https://hdl.handle.net/1959.4/unsworks_84021; https://doi.org/10.3390/biom13071028

Availability: https://hdl.handle.net/1959.4/unsworks_84021
https://unsworks.unsw.edu.au/bitstreams/897e7a59-6af6-4e78-85fc-29f4da6aacef/download
https://doi.org/10.3390/biom13071028

Visualization of Biomedical Data

Authors: James B. Procter, Esther Stenau, Aaron E. Darling, Davis J. McCarthy, Jenny Vuong, Seán I. O'Donoghue, Sandeep Kaur, William J. Moore, Jason R. Swedlow, Lena Maier-Hein, Susan J. Clark, James M. Hogan, Benedetta Frida Baldi

Contributors: Altman, RB, Levitt, M

Source: Annual Review of Biomedical Data Science. 1:275-304

Subject Terms: 0301 basic medicine, Cell biology, Data visualization, Molecular biology, Human Genome, 0206 medical engineering, 02 engineering and technology, Tissue imaging, 3. Good health, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Multivariate data, Genetics, Generic health relevance, Metagenomics, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences

File Description: application/pdf

Access URL: https://www.annualreviews.org/doi/pdf/10.1146/annurev-biodatasci-080917-013424
https://opus.lib.uts.edu.au/bitstream/10453/125943/4/annurev-biodatasci-080917-013424%20%281%29.pdf
https://peerj.com/preprints/26896.pdf
https://www.annualreviews.org/doi/10.1146/annurev-biodatasci-080917-013424
https://discovery.dundee.ac.uk/en/publications/visualization-of-biomedical-data
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3329799
https://peerj.com/preprints/26896/