Synthetic DNA-based Swimmers Driven by Enzyme Catalysis

Authors: Tania Patiño Padial, Erica Del Grosso, Serena Gentile, Lorena Baranda Pellejero, Rafael Mestre, Lars J. M. M. Paffen, Samuel Sánchez, Francesco Ricci

Contributors: Patiño Padial, T, Del Grosso, E, Gentile, S, Baranda Pellejero, L, Mestre, R, Paffen, Ljmm, Sánchez, S, Ricci, F

Source: Journal of the American Chemical Society. 146:12664-12671

Subject Terms: 0301 basic medicine, Urease/chemistry, Hydrogen Peroxide/chemistry, DNA, Hydrogen Peroxide, Settore CHEM-01/A - Chimica analitica, Catalase, Urease, 01 natural sciences, Nanostructures, 0104 chemical sciences, Catalase/chemistry, 03 medical and health sciences, Settore CHIM/01, Biocatalysis, DNA/chemistry, Nanostructures/chemistry

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38587543
https://research.tue.nl/en/publications/61b118eb-01d2-4909-9613-58648625cd46
https://doi.org/10.1021/jacs.4c02094

Self‐Regulated and Temporal Control of a 'Breathing' Microgel Mediated by Enzymatic Reaction

Authors: Hailong Che, Bastiaan C. Buddingh', Jan C. M. van Hest

Source: Angew Chem Int Ed Engl
Angewandte Chemie International Edition

Subject Terms: self-regulation, 02 engineering and technology, enzyme catalysis, 01 natural sciences, Fluorescence, non-equilibrium processes, Gels/chemistry, Urea, Particle Size, Urease/chemistry, Immobilized/chemistry, breathing microgels, Hydrogen-Ion Concentration, feedback mechanism, Enzymes, Immobilized, Urease, Communications, Enzymes, 0104 chemical sciences, Nylons, Biocatalysis, Methacrylates, Methacrylates/chemistry, Urea/chemistry, 0210 nano-technology, Gels, Nylons/chemistry

Access URL: https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/ange.201706716
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/anie.201706716
https://pubmed.ncbi.nlm.nih.gov/28772021
https://research.tue.nl/en/publications/6352e8e3-2fc5-4a87-a42d-e0b7fcb610f6
https://doi.org/10.1002/anie.201706716

Bioinorganic Chemistry of Bismuth and Antimony: Target Sites of Metallodrugs

Authors: Ge, R, Sun, H

Source: Accounts of Chemical Research. 40:267-274

Subject Terms: Antimony, Glutathione - Analogs & Derivatives - Chemistry - Metabolism, Transferrin - Chemistry - Metabolism, Spectrometry, Mass, Electrospray Ionization, Magnetic Resonance Spectroscopy, Time Factors, Spermidine, Proteins - Chemistry - Metabolism, 01 natural sciences, Spermidine - Analogs & Derivatives - Chemistry - Metabolism, Enzymes - Chemistry - Metabolism, Cations, Bismuth - Chemistry - Metabolism, Urease - Chemistry - Metabolism, Nucleotides - Chemistry - Metabolism, Molecular Structure, Spectrometry, Nucleotides, Electrospray Ionization, Transferrin, Proteins, Mass, Antimony - Chemistry - Metabolism, Glutathione, Urease, Enzymes, 3. Good health, 0104 chemical sciences, Lactoferrin, Histidine-Rich Glycoprotein, Drug Design, Bismuth, Lactoferrin - Chemistry - Metabolism, Protein Binding

Access URL: https://pubmed.ncbi.nlm.nih.gov/17330963
http://hdl.handle.net/10722/168109

Self-regulated and temporal control of a 'breathing' microgel mediated by enzymatic reaction

Authors: Che, H., Buddingh, B.C., van Hest, J.C.M.

Source: Che, H, Buddingh, B C & van Hest, J C M 2017, 'Self-regulated and temporal control of a "breathing" microgel mediated by enzymatic reaction', Angewandte Chemie - International Edition, vol. 56, no. 41, 41, pp. 12581-12585. https://doi.org/10.1002/anie.201706716

Subject Terms: breathing microgels, enzyme catalysis, feedback mechanism, non-equilibrium processes, self-regulation, Biocatalysis, Fluorescence, Particle Size, Nylons/chemistry, Urease/chemistry, Enzymes, Immobilized/chemistry, Methacrylates/chemistry, Urea/chemistry, Gels/chemistry, Hydrogen-Ion Concentration

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Relation: info:eu-repo/semantics/altIdentifier/pmid/28772021; info:eu-repo/semantics/altIdentifier/wos/000411810600028; info:eu-repo/semantics/altIdentifier/pissn/0570-0833; info:eu-repo/semantics/altIdentifier/eissn/1521-3773

Availability: https://research.tue.nl/en/publications/6352e8e3-2fc5-4a87-a42d-e0b7fcb610f6
https://doi.org/10.1002/anie.201706716
https://pure.tue.nl/ws/files/79763571/cheself_2017.pdf
https://www.scopus.com/pages/publications/85029916633

Molecular characterization of Bacillus pasteurii UreE, a metal-binding chaperone for the assembly of the urease active site

Authors: Ciurli, Stefano, Safarov, Niyaz, Miletti, Silvia, Dikiy, Alexander, Christensen, Suzanne K, Kornetzky, Katja, Bryant, Donald A, Vandenberghe, Isabel, Devreese, Bart, Samyn, Bart, Remaut, Han, Van Beeumen, Jozef

Contributors: Department of Bio-engineering Sciences, Structural Biology Brussels, FORMER_Structural Biology Brussels

Source: JBIC Journal of Biological Inorganic Chemistry. 7:623-631

Subject Terms: 0301 basic medicine, Spectrometry, Mass, Electrospray Ionization, Nickel/metabolism, Protein Conformation, Molecular Sequence Data, Molecular Chaperones/chemistry, Recombinant Proteins/chemistry, Bacillus, Protein Structure, Secondary, 03 medical and health sciences, Bacterial Proteins, Bacterial Proteins/chemistry, Nickel, Histidine, Amino Acid Sequence, Cloning, Molecular, Nuclear Magnetic Resonance, Biomolecular, Bacillus/chemistry, Urease/chemistry, 0303 health sciences, Binding Sites, Sequence Homology, Amino Acid, Histidine/metabolism, Carrier Proteins/chemistry, Zinc/chemistry, Urease, Recombinant Proteins, Zinc, Carrier Proteins, Molecular Chaperones

Access URL: https://pubmed.ncbi.nlm.nih.gov/12072968
https://hdl.handle.net/20.500.14017/d64c4d47-a092-40ff-8c4a-dc662be51368
https://biblio.vub.ac.be/vubir/molecular-characterization-of-bacillus-pasteurii-uree-a-metalbinding-chaperone-for-the-assembly-of-the-urease-active-site(d64c4d47-a092-40ff-8c4a-dc662be51368).html
https://doi.org/10.1007/s00775-002-0341-7

Structural Basis for Ni2+Transport and Assembly of the Urease Active Site by the Metallochaperone UreE from Bacillus pasteurii

Authors: Remaut, H, Safarov, N, Ciurli, S, Van Beeumen, J

Contributors: Department of Bio-engineering Sciences, Structural Biology Brussels, FORMER_Structural Biology Brussels

Source: Journal of Biological Chemistry. 276:49365-49370

Subject Terms: Models, Molecular, 0301 basic medicine, Nickel/metabolism, Protein Conformation, Molecular Chaperones/chemistry, Bacillus, Crystallography, X-Ray, Biochemistry, ion transport, 03 medical and health sciences, Bacterial Proteins, Bacterial Proteins/chemistry, Nickel, Protein Structure, Quaternary, Molecular Biology, Bacillus/chemistry, Urease/chemistry, 0303 health sciences, Binding Sites, Ion Transport, Carrier Proteins/chemistry, Cell Biology, Zinc/chemistry, Urease, EUTOPIA Alliance, Zinc, Carrier Proteins, Molecular Chaperones

Access URL: http://www.jbc.org/content/276/52/49365.full.pdf
https://pubmed.ncbi.nlm.nih.gov/11602602
https://www.openaccessrepository.it/record/94537
https://biblio.vub.ac.be/vubir/structural-basis-for-ni2-transport-and-assembly-of-the-urease-active-site-by-the-metallochaperone-uree-from-bacillus-pasteurii(61ce05d8-7f09-4a6c-b79a-9d56d38eab3e).html

Assembly of preactivation complex for urease maturation in Helicobacter pylori: crystal structure of UreF-UreH protein complex

Authors: Fong, Yu Hang, Wong, Ho Chun, Chuck, Chi Pang, Chen, Yu Wai, Sun, Hongzhe, Wong, Kam-Bo

Source: The Journal of biological chemistry. 286(50)

Subject Terms: 0301 basic medicine, Protein Structure, Secondary, Carrier Proteins - chemistry - genetics - metabolism, 0303 health sciences, Crystallography, Crystallography, X-Ray - methods, X-Ray - methods, Helicobacter pylori, Urease - chemistry - genetics - metabolism, Bacterial Proteins - chemistry - genetics - metabolism, Membrane Transport Proteins, Phosphate-Binding Proteins, Crystallography, X-Ray, Urease, Protein Structure, Secondary, 03 medical and health sciences, Helicobacter pylori - genetics - metabolism, Bacterial Proteins, X-Ray, Carrier Proteins, Protein Binding

Access URL: https://pubmed.ncbi.nlm.nih.gov/22013070
http://hdl.handle.net/10722/159373

Differential regulation of amidase- and formamidase-mediated ammonia production by the Helicobacter pylori fur repressor.

Authors: Vliet, A.H.M. (Arnoud) van, Stoof, J. (Jeroen), Poppelaars, S.W. (Sophie), Bereswill, S. (Stefan), Homuth, G. (Georg), Kist, M. (Manfred), Kuipers, E.J. (Ernst), Kusters, J.G. (Johannes)

Source: Journal of Biological Chemistry vol. 278 no. 11, pp. 9052-9057

Subject Terms: Gene Expression Regulation, Amidohydrolases/*biosynthesis/metabolism, Ammonia/*metabolism, Bacterial Proteins/chemistry/*metabolism, Base Sequence, DNA/metabolism, Helicobacter pylori/*metabolism/pathogenicity, Humans, Iron-Regulatory Proteins/*metabolism, Iron/pharmacology, Models, Biological, Molecular Sequence Data, Nucleic Acid Hybridization, Plasmids/metabolism, Promoter Regions (Genetics), Protein Binding, RNA/metabolism, Repressor Proteins/chemistry/*metabolism, Research Support, Non-U.S. Gov't, Substrate Specificity, Transcription, Genetic, Urease/chemistry

File Description: application/pdf

Relation: https://repub.eur.nl/pub/13127; urn:hdl:1765/13127

Availability: https://repub.eur.nl/pub/13127
https://doi.org/10.1074/jbc.M207542200

Unravelling the fate of foliar-applied nickel in soybean: a comprehensive investigation.

Authors: de Oliveira, Jessica Bezerra, Lavres, Jose, Kopittke, Peter M., Chaney, Rufus L., Harris, Hugh H., Erskine, Peter D., Howard, Daryl L., dos Reis, André Rodrigues, van der Ent, Antony

Source: Plant & Soil; Sep2024, Vol. 502 Issue 1/2, p537-556, 20p

Subject Terms: Fluorimetry, Nutritional status, Plant biomass, Metal ions, Trichomes

Synthetic DNA-based Swimmers Driven by Enzyme Catalysis

Authors: Patiño Padial, Tania, Del Grosso, Erica, Gentile, Serena, Baranda Pellejero, Lorena, Mestre, Rafael, Paffen, Lars J.M.M., Sánchez, Samuel, Ricci, Francesco

Source: Journal of the American Chemical Society vol.146 (2024) date: 2024-05-08 nr.18 p.12664-12671 [ISSN 0002-7863]

Index Terms: DNA/chemistry, Urease/chemistry, Catalase/chemistry, Nanostructures/chemistry, Biocatalysis, Hydrogen Peroxide/chemistry, Tijdschriftartikel, Article

URL: https://research.tue.nl/en/publications/61b118eb-01d2-4909-9613-58648625cd46

Different barbiturate derivatives linked to aryl hydrazone moieties as urease inhibitors; design, synthesis, urease inhibitory evaluations, and molecular dynamic simulations.

Authors: Mollazadeh, Marjan, Azizian, Homa, Fakhrioliaei, Azadeh, Iraji, Aida, Avizheh, Laya, Valizadeh, Yousef, Zomorodian, Kamiar, Elahi, Fateme, Moazzam, Ali, Kazemzadeh, Houman, Amanlou, Massoud, Garmciri, Farnia, Hamidian, Elham, Biglar, Mahmood, Larijani, Bagher, Mahdavi, Mohammad

Source: Medicinal Chemistry Research; May2023, Vol. 32 Issue 5, p930-943, 14p

Temporally programmed switching of functional states in polyaniline film.

Authors: Sonu, K. P., Dhiman, Shikha, Garg, Abhishek, Selvakumar, D., George, Subi J., Eswaramoorthy, Muthusamy

Source: APL Materials; Mar2023, Vol. 11 Issue 3, p1-7, 7p

Subject Terms: Polyanilines, Optical films, Polymer films

Design and synthesis of new N-thioacylated ciprofloxacin derivatives as urease inhibitors with potential antibacterial activity.

Authors: Pedrood, Keyvan, Azizian, Homa, Montazer, Mohammad Nazari, Moazzam, Ali, Asadi, Mehdi, Montazeri, Hamed, Biglar, Mahmood, Zamani, Mozhdeh, Larijani, Bagher, Zomorodian, Kamiar, Mohammadi-Khanaposhtani, Maryam, Irajie, Cambyz, Amanlou, Massoud, Iraji, Aida, Mahdavi, Mohammad

Source: Scientific Reports; 8/15/2022, Vol. 12 Issue 1, p1-17, 17p

Subject Terms: Urease, Antibacterial agents, Escherichia coli, Ciprofloxacin, Drug standards, Gram-negative bacteria

Urea‐Urease Reaction in Controlling Properties of Supramolecular Hydrogels: Pros and Cons.

Authors: Panja, Santanu, Adams, Dave J.

Source: Chemistry - A European Journal; 6/21/2021, Vol. 27 Issue 35, p8928-8939, 12p

Subject Terms: Environmental remediation, Tissue engineering, Kinetic control, Hydrogels, Cell culture, Catalysis

Impact of foliar nickel application on urease activity, antioxidant metabolism and control of powdery mildew (Microsphaera diffusa) in soybean plants.

Authors: Barcelos, J. P. Q., Reis, H. P. G., Furlani Junior, E., Reis, A. R., Godoy, C. V., Gratão, P. L., Putti, F. F., Campos, M.

Source: Plant Pathology; Sep2018, Vol. 67 Issue 7, p1502-1513, 12p

Subject Terms: Foliar application of plant regulators, Nickel, Urease genetics, Antioxidant analysis, Powdery mildew diseases, Soybean

Effect of water stress and nickel application on yield components and agronomic characteristics of canola grown on two calcareous soils.

Authors: Moosavi, Ali Akbar, Mansouri, Samireh, Zahedifar, Maryam, Sadikhani, Mahmood Reza

Source: Archives of Agronomy & Soil Science; Dec2014, Vol. 60 Issue 12, p1747-1764, 18p

Subject Terms: Physiological effects of nickel, Effect of water levels on plants, Plant growth, Canola, Calcareous soils, Plant yields, Agronomy

Subject Index.

Source: Chemistry & Biodiversity; Dec2007, Vol. 4 Issue 12, p2970-3018, 49p

Online monitoring of urea concentration in dialysate with dual-beam Fourier-transform near-infrared spectroscopy.

Authors: Peter Snoer Jensen

Source: Journal of Biomedical Optics; May2004, Vol. 9 Issue 3, p553-557, 5p

Inactivation of urease by nitrogen mustard and a comparison with inactivation by x-rays.

Authors: LEWIS SE, WILLS ED, WORMALL A

Source: International journal of radiation biology and related studies in physics, chemistry, and medicine [Int J Radiat Biol Relat Stud Phys Chem Med] 1961 Nov; Vol. 3, pp. 657-70.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 0374725 Publication Model: Print Cited Medium: Print ISSN: 0020-7616 (Print) Linking ISSN: 00207616 NLM ISO Abbreviation: Int J Radiat Biol Relat Stud Phys Chem Med Subsets: OLDMEDLINE

MeSH Terms: Mechlorethamine* , Radiation Effects*, Nitrogen Mustard Compounds/*pharmacology , Urease/*chemistry, X-Rays

Influence of enzyme and substrate concentrations on the decomposition of urea by commercial urease and urease obtained from Glycine soja beans in phosphate buffer.

Authors: BAHADUR K, CHANDRA V

Source: Enzymologia [Enzymologia] 1961 Jun 30; Vol. 23, pp. 117-22.

Publication Type: Journal Article

Journal Info: Publisher: Junk [etc.] Country of Publication: Netherlands NLM ID: 0427141 Publication Model: Print Cited Medium: Print ISSN: 0013-9424 (Print) Linking ISSN: 00139424 NLM ISO Abbreviation: Enzymologia Subsets: OLDMEDLINE

MeSH Terms: Fabaceae* , Glycine* , Phosphates*, Glycine max/*chemistry , Urea/*chemistry , Urease/*chemistry