Dealing with noise and biases in omics: statistical methods, deep learning and workflows

Συγγραφείς: Jin Wu, Suzanne

Thesis Advisors: Notredame, Cedric

Πηγή: TDX (Tesis Doctorals en Xarxa)

Θεματικοί όροι: Transcriptomic analysis, Noise and biases, Normalization, Deep learning, Differential abundance, Gene-gene correlation, Compositional bias, Bioinformatics, Pipelines

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://hdl.handle.net/10803/696721

Polyethylenimine-Coated MXene Quantum Dots Integrate Anti-Oomycete Activity with Host Immunity Activation for Plant Oomycete Control

Συγγραφείς: Wu, Rui-Xin^aff1, Zhai, Xin-Yu^aff1, Jin, Jing-Hao^aff1, Zhang, Li-Hang^aff1, Dai, Ting-Ting^aff2, Wu, Hong-Hong^aff3, Srivastava, Vaibhav^aff4, Chen, Xiao-Ren^aff1

Πηγή: Journal of Agricultural and Food Chemistry. 74(35):27402-27415

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jafc.6c05093

Developmental Toxicity and Mechanistic Insights into the Novel Fungicide Fluindapyr in Zebrafish Embryos

Συγγραφείς: Qian, Le^{aff1, aff2}, Zhang, Mengge^{aff1, aff2}, Jiang, Jia^{aff1, aff2}, He, Kai^{aff1, aff2}, Zhang, Yikai^{aff1, aff2}, Huang, Xiaobo^{aff1, aff2}, Che, Zhiping^{aff1, aff2}, Chen, Genqiang^{aff1, aff2}, Liu, Shengming^{aff1, aff2}

Πηγή: Journal of Agricultural and Food Chemistry. 74(32):24974-24988

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jafc.6c02355

Exploring Neural Mechanisms of Visual Working Memory for Real-World Stimuli Categories: Insights From the Fusiform Gyrus

Συγγραφείς: Xiong, R., Wei, X., Zhang, J., Jin, Z., Li, L.

Πηγή: IEEE Journal of Biomedical and Health Informatics IEEE J. Biomed. Health Inform. Biomedical and Health Informatics, IEEE Journal of. 30(7):5794-5805 Jul, 2026

Integrated Transcriptomic and Metabolomic Analysis Reveals the Antibacterial Mechanisms of the Novel Peptide FxCy2 against Helicobacter pylori

Συγγραφείς: Bi, Bo^aff1, Ye, Zhuming^aff1, Yang, Zhijie^aff1, He, Zeqi^aff1, Tan, Jiaojiao^aff1, Xie, Wenxi^aff1, Chen, Yunjiao^aff1, Song, Mingyue^aff1, Bao, Anru^aff1, Ho, Chi-Tang^aff3, Li, Xiaoqing^aff2, Cao, Yong^aff1

Πηγή: Journal of Agricultural and Food Chemistry. 74(16):12906-12917

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jafc.5c17294

Natural Product 2‑Amino-3-methylhexanoic Acid Stimulates Cucumber Growth via Nutrient and Energy Coordination

Συγγραφείς: Yang, Qian, Yang, Mingying, Wu, Mingli, Chen, Qizhen, Chang, Yuan, Zhang, Qianlong, Wang, He, Chen, Shiguo

Πηγή: Journal of Agricultural and Food Chemistry. 74(14):11403-11417

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jafc.5c12710

Soft-Sensing-Guided Glucose/l‑Phenylalanine Cofeeding Strategy and Transcriptomic Analysis of the Optimal l‑Phenylalanine Supply Range for Efficient β‑Phenylethanol Biosynthesis in Saccharomyces cerevisiae

Συγγραφείς: Yang, Chenghan^{aff1, aff2}, Jia, Huining^{aff1, aff2}, Zhang, Li^{aff1, aff2}, Lan, Hongrun^aff2, Chen, Huyang^aff2, Bei, Hao^aff2, Mohsin, Ali^aff2, Chu, Ju^{aff1, aff2}, Hang, Haifeng^{aff1, aff2}, Tian, Xiwei^aff1, Zhuang, Yingping^{aff1, aff2}

Πηγή: Journal of Agricultural and Food Chemistry. 74(12):10489-10500

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acs.jafc.5c17100

Drug-associated cytokine release syndrome: a FAERS pharmacovigilance study with complementary transcriptomic analysis

Συγγραφείς: Zhang, Ye^Aff1, Li, Xiang^Aff1, Zhang, Jieyu^Aff1, Chen, Shudong^Aff1, Zang, Juxiang^Aff1, Wu, Dongni^Aff1, Qin, Jun^Aff1, Ling, Wei^{Aff1, IDs0021002605550z_cor1}

Πηγή: Naunyn-Schmiedeberg's Archives of Pharmacology. 399(11):18283-18297

Ce-Based MOFs Coated with Carbon Nanotubes for pH-Controlled Release of Antifungal Agents

Συγγραφείς: Chandra, Dilip Kumar, Kumar, Awanish, Mahapatra, Chinmaya

Πηγή: ACS Applied Nano Materials. 8(50):24208-24226

Διαθεσιμότητα: https://pubs.acs.org/doi/10.1021/acsanm.5c04898

Single-Cell RNA Sequencing Identifies Dysregulated Signaling in the Prefrontal Cortex of Alzheimer's Disease

Συγγραφείς: Tran, Van-An, Pham, Duc-Anh, Mac, Thu-Trang, Nguyen, Trang-Nhung, Tran, Phuong-Thao Nguyen, Pham, Luong-Thang, Nguyen, My-Linh, Do, Van-Khanh

Πηγή: 2025 2nd International Conference on Health Science and Technology (ICHST) Health Science and Technology (ICHST), 2025 2nd International Conference on. :1-7 Jul, 2025

Relation: 2025 2nd International Conference on Health Science and Technology (ICHST)

AI in Neurodegenerative Disease Research: IBM Watson Identifying RNA Binding Proteins

Συγγραφείς: M.M.Alkubaisy, Hashim, Dulfikar Jawad, Shakir, Karrar Hayder, Abboud, Riad Azizi, Alabdeli, Haider, Ahmed, Abeer, Hussein Al-Saidi, Imad Al-Din

Πηγή: 2024 International Conference on IoT, Communication and Automation Technology (ICICAT) IoT, Communication and Automation Technology (ICICAT), 2024 International Conference on. :669-674 Nov, 2024

Relation: 2024 International Conference on IoT, Communication and Automation Technology (ICICAT)

Cell line identity rather than medium composition determines transcriptomic profiles of HepaRG and HuH7 cells cultured in chemically defined or serum-based media: comparison with primary human hepatocytes

Συγγραφείς: Ali, Ahmed S. M.^Aff1, Sprenger, Heike^Aff2, Braeuning, Albert^Aff2, Kurreck, Jens^{Aff1, IDs0020402604502z_cor1}

Πηγή: Archives of Toxicology. :1-16

SLA and DDX60L as potential diagnostic biomarkers for subclinical atherosclerosis in systemic lupus erythematosus: a transcriptomic and clinical validation study

Συγγραφείς: Huang, Yumin^Aff1, Liu, Wei^Aff1, Yang, Xichao^Aff2, Wang, Hui^Aff1, Chen, Jia^Aff3, Cao, Xue^Aff1, Ren, Ying^Aff1, Feng, Yuan^{Aff1, IDs10067026081632_cor1}

Πηγή: Clinical Rheumatology: Journal of the International League of Associations for Rheumatology. 45(7):4215-4231

Cerebral metabolic patterns on 18F-FDG PET are associated with clinical heterogeneity and prognosis in amyotrophic lateral sclerosis: a genetic and transcriptomic perspective

Συγγραφείς: Wang, Xueying^{Aff1, Aff2}, Wu, Feifei^Aff2, Zhang, Jinfan^Aff2, Song, Xinyu^{Aff3, Aff4}, Liu, Pan^Aff3, Liu, Ziqin^Aff3, Wang, Junling^{Aff3, Aff5, Aff6, Aff7, Aff8, Aff9, Aff10, IDs0025902607871w_cor1}, Zhang, Yuanchao^{Aff11, IDs0025902607871w_cor2}, Grecucci, Alessandro^Aff12, Yi, Xiaoping^{Aff1, Aff13, Aff14, Aff15, IDs0025902607871w_cor3}, Chen, Bihong T.^Aff16

Πηγή: European Journal of Nuclear Medicine and Molecular Imaging. 53(8):5130-5145

Comparative Transcriptomic Analysis Reveals the Regulatory Mechanism of Short Oligogalacturonides Induce Resistance against Pst DC3000 in Arabidopsis thaliana

Συγγραφείς: Li, Min^Aff1, Zhang, Xinyue^Aff1, Howlader, Prianka^{Aff1, Aff2}, Wang, Wenxia^Aff1, Gao, Jin^{Aff1, IDs0034402612304x_cor1}, Yin, Heng^{Aff1, IDs0034402612304x_cor2}

Πηγή: Journal of Plant Growth Regulation. :1-16

Multi-scale transcriptomic integration reveals epithelial state heterogeneity and remodeling-associated transcriptomic clusters in chronic rhinosinusitis with nasal polyps

Συγγραφείς: Liu, Fang^Aff1, Ye, Fei^Aff1, Gu, Xilan^Aff1, Yin, Xiaodong^{Aff1, IDs00405026101690_cor1}

Πηγή: European Archives of Oto-Rhino-Laryngology: and Head & Neck. 283(6):3773-3783

Decoding the Histomorphological and Multi-Omic Characteristics of Melanotic Schwannoma

Συγγραφείς: Jiang, Yi^Aff1, Zhao, Rui^Aff2, Xian, Hang^Aff2, Shi, Lin^Aff2, Zhang, Jin-kang^Aff3, Li, Song-lin^Aff3, Peng, Ye^Aff3, Du, Jun-jie^Aff3, Cong, Rui^{Aff2, IDs11596026001976_cor1}, Wang, Han^{Aff3, IDs11596026001976_cor2}

Πηγή: Current Medical Science. 46(3):690-703

Molecular insights into insulin-like signaling and its positive role in growth of the bivalve Mulinia lateralis

Συγγραφείς: Kong, Lingling^Aff1, Kong, Xiangfu^Aff1, Meng, Deting^Aff1, Zhang, Xiangchao^{Aff1, IDs42995026003692_cor1}, Meng, Jie^Aff1, Bao, Zhenmin^{Aff1, Aff2}, Hu, Xiaoli^{Aff1, Aff2, IDs42995026003692_cor2}

Πηγή: Marine Life Science & Technology. 8(2):432-445

Circulating MicroRNA Signatures in Severe Alopecia Areata: Diagnostic Discrimination, Pathway Analysis, and Therapeutic Implications

Συγγραφείς: Gay-Mimbrera, Jesús^Aff1, Aguilar-Luque, Macarena^Aff1, Gómez-Arias, Pedro J.^{Aff1, Aff2}, Rivera-Ruiz, Irene^{Aff1, Aff2}, Gómez-García, Francisco^{Aff1, Aff2}, Juan-Cencerrado, Miguel^{Aff1, Aff2}, Mochón-Jiménez, Carmen^{Aff1, Aff2}, Parra-Peralbo, Esmeralda^Aff3, Ruiz-Villaverde, Ricardo^Aff5, Liñares-Blanco, José^Aff4, Carmona-Saez, Pedro^Aff4, Isla-Tejera, Beatriz^{Aff1, Aff6, IDs13555026016576_cor1}, Ruano, Juan^{Aff1, Aff2, IDs13555026016576_cor2}

Πηγή: Dermatology and Therapy: Research, treatment and aesthetic interventions in dermatology. 16(5):2393-2410

Identification and characterization of glutathione S-transferase genes in Sargassum thunbergii and their response to cadmium stress

Συγγραφείς: Lü, Fang^{j_bot-2026-0049_aff_001}, Liu, Tong^{j_bot-2026-0049_aff_001}, Liu, Kaikai^{j_bot-2026-0049_aff_001}, Liu, Qian^{j_bot-2026-0049_aff_001}, Song, Jingjing^{j_bot-2026-0049_aff_001}, Tang, Liuqing^{j_bot-2026-0049_aff_001}, Xu, Mengxue^{j_bot-2026-0049_aff_001}, Wu, Haiyi^{j_bot-2026-0049_aff_001}

Πηγή: Botanica Marina. 69(5):401-413

Διαθεσιμότητα: https://www.degruyter.com/document/doi/10.1515/bot-2026-0049/html