Transcriptomic profile of microglia following inflammation-sensitized hypoxic-ischemic brain injury in neonatal rats suggests strong contribution to neutrophil chemotaxis and activation

Συγγραφείς: Bremer, Anna-Sophie, Henschel, Nico, Burkard, Hannah, Bernis, Maria Eugenia, Ulas, Thomas, Sabir, Hemmen

Πηγή: J Neuroinflammation
Journal of neuroinflammation 22(1), 189 (2025). doi:10.1186/s12974-025-03516-1

Θεματικοί όροι: Neutrophils: metabolism, Neutrophils, Brain inflammation, Transcriptome: physiology, Transcriptomic analysis, Neutrophil Activation, Hypoxia-Ischemia, Brain: immunology, Rats, Sprague-Dawley, Inflammation: metabolism, Microglia: metabolism, Hypoxia-Ischemia, Brain: pathology, Animals, Hypoxia-Ischemia, Brain: genetics, Inflammation, Hypoxia-Ischemia, Brain: metabolism, Research, Chemotaxis, Gene Expression Profiling, Chemotaxis: physiology, Rats, Inflammation: pathology, Neutrophils: immunology, Neonatal Hypoxia-Ischemia, Animals, Newborn, Neutrophil recruitment, Hypoxia-Ischemia, Brain, Neutrophil Activation: physiology, Microglia priming, Microglia: pathology, Microglia, Transcriptome

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/40684206
https://pub.dzne.de/record/280026

Code analysis and supplementary files for 'Blubber Transcriptome Reveals Molecular Signatures of Fasting Stage and Toxicological Response in Humpback Whale (Megaptera novaeangliae)'

Συγγραφείς: Oteri, Erika, Bar, Ido, Raffan, Eleanor, Bengtson Nash, Susan

Θεματικοί όροι: Fasting/physiology, Transcriptome/physiology, Marine mammal

Sexual conflict drives male manipulation of female postmating responses inDrosophila melanogaster

Συγγραφείς: Brian Hollis, Mareike Koppik, Kristina U. Wensing, Hanna Ruhmann, Eléonore Genzoni, Berra Erkosar, Tadeusz J. Kawecki, Claudia Fricke, Laurent Keller

Πηγή: Proc Natl Acad Sci U S A
Proceedings of the National Academy of Sciences of the United States of America.-2019
Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 17, pp. 8437-8444

Θεματικοί όροι: Male, 0301 basic medicine, 0303 health sciences, Seminal Plasma Proteins, Animals, Biological Evolution, Drosophila Proteins/analysis, Drosophila Proteins/genetics, Drosophila Proteins/metabolism, Drosophila melanogaster/genetics, Drosophila melanogaster/metabolism, Drosophila melanogaster/physiology, Female, Seminal Plasma Proteins/analysis, Seminal Plasma Proteins/genetics, Seminal Plasma Proteins/metabolism, Sexual Behavior, Animal/physiology, Transcriptome/genetics, Transcriptome/physiology, Drosophila melanogaster, experimental evolution, seminal fluid proteins, sexual conflict, sexual selection, 3. Good health, Sexual Behavior, Animal, 03 medical and health sciences, PNAS Plus, 5. Gender equality, Drosophila Proteins, Transcriptome, 10. No inequality

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://www.pnas.org/content/pnas/116/17/8437.full.pdf
https://pubmed.ncbi.nlm.nih.gov/30962372
https://sonar.ch/global/documents/239133
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_0116569E2A2C7
https://serval.unil.ch/resource/serval:BIB_0116569E2A2C.P001/REF.pdf
https://serval.unil.ch/notice/serval:BIB_0116569E2A2C

Sex-dependent dynamics of metabolism in primary mouse hepatocytes

Συγγραφείς: Hochmuth, Luise, Körner, Christiane, Ott, Fritzi, Volke, Daniela, Blagotinšek Cokan, Kaja, Juvan, Peter, Brosch, Mario, Hofmann, Ute, Hoffmann, Ralf, Rozman, Damjana, Berg, Thomas, Matz-Soja, Madlen

Πηγή: http://lobid.org/resources/99370671250806441#!, 95(9):3001-3013.

Θεματικοί όροι: Transcriptome/physiology [MeSH], Drug metabolism, Mice, Inbred C57BL [MeSH], Melatonin/metabolism [MeSH], Liver, Male [MeSH], Signal Transduction/physiology [MeSH], Toxicokinetics and Metabolism, Aryl Hydrocarbon Hydroxylases/genetics [MeSH], Sex Characteristics [MeSH], Sex Factors [MeSH], Female [MeSH], Serotonin/metabolism [MeSH], Sexual dimorphism, Animals [MeSH], Hepatocytes/metabolism [MeSH], Hepatocytes, Cytochrome P-450 Enzyme System/genetics [MeSH], Cytochrome P450 Family 2/genetics [MeSH], Steroid Hydroxylases/genetics [MeSH], Lipid metabolism, Mice [MeSH], Proteome/physiology [MeSH], Cytochrome P450, Metabolome/physiology [MeSH], Gene Expression Regulation/physiology [MeSH]

Relation: https://repository.publisso.de/resource/frl:6451653; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8380230/

Διαθεσιμότητα: https://repository.publisso.de/resource/frl:6451653
https://doi.org/10.1007/s00204-021-03118-9
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8380230/

Pro- and anti-inflammatory macrophages express a sub-type specific purinergic receptor profile

Συγγραφείς: Merz, J., Nettesheim, A., von Garlen, S., Albrecht, P., Saller, B. S., Engelmann, J., Hertle, L., Schäfer, I., Dimanski, D., König, S., Karnbrock, L., Bulatova, K., Peikert, A., Hoppe, N., Hilgendorf, I., von zur Mühlen, C., Wolf, D., Groß, O., Bode, C., Zirlik, A., Stachon, Peter

Πηγή: http://lobid.org/resources/99370675973806441#!, 17(3):481-492.

Θεματικοί όροι: Transcriptome/physiology [MeSH], Macrophages, Inflammation Mediators/metabolism [MeSH], Macrophages/metabolism [MeSH], Animals [MeSH], Original Article, Mice [MeSH], Receptors, Purinergic/biosynthesis [MeSH], Purinergic/genetics [MeSH], Purinergic receptor: Inflammation, Cells, Cultured [MeSH], Cell Polarity/physiology [MeSH], Polarization

Relation: https://repository.publisso.de/resource/frl:6444736; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410913/

Διαθεσιμότητα: https://repository.publisso.de/resource/frl:6444736
https://doi.org/10.1007/s11302-021-09798-3
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410913/

Bulk and single cell transcriptomic data indicate that a dichotomy between inflammatory pathways in peripheral blood and arthritic joints complicates biomarker discovery

Συνεισφορές: Eun Jung Lee 1, Sandra Lilja 2, Xinxiu Li 2, Samuel Schäfer 2, Huan Zhang 3, Mikael Benson 4, Lee, Eun Jung

Θεματικοί όροι: Animals, Arthritis, Rheumatoid / metabolism, Rheumatoid / pathology, Biomarkers / metabolism, CD4-Positive T-Lymphocytes / metabolism, CD4-Positive T-Lymphocytes / pathology, Cells, Cultured, Female, Humans, Inflammation / metabolism, Inflammation / pathology, Joints / metabolism, Joints / pathology, Leukocytes, Mononuclear / metabolism, Mononuclear / pathology, Male, Mice, Signal Transduction / physiology, Synovial Membrane / metabolism, Synovial Membrane / pathology, T-Lymphocytes, Helper-Inducer / metabolism, Helper-Inducer / pathology, Transcriptome / physiology, Rheumatoid arthritis, Single cell RNA sequencing, Blood

Relation: CYTOKINE; J00691; https://ir.ymlib.yonsei.ac.kr/handle/22282913/190203; https://www.sciencedirect.com/science/article/pii/S1043466619303898; T9992020428

Διαθεσιμότητα: https://ir.ymlib.yonsei.ac.kr/handle/22282913/190203
https://doi.org/10.1016/j.cyto.2019.154960
https://www.sciencedirect.com/science/article/pii/S1043466619303898

Figure S1. Candidate Reference Genes.

Συγγραφείς: Martínez-Morales, María Guadalupe

Θεματικοί όροι: transcriptomic, Transcriptome, Transcriptome/physiology

Relation: https://zenodo.org/records/17089292; oai:zenodo.org:17089292; https://doi.org/10.5281/zenodo.17089292

Διαθεσιμότητα: https://doi.org/10.5281/zenodo.17089292
https://zenodo.org/records/17089292

A gene expression based predictor for high risk myeloma treated with intensive therapy and autologous stem cell rescue

Συγγραφείς: Wu, Ping, Walker, Brian A, Broyl, Annemiek, Kaiser, Martin, Johnson, David C, Kuiper, Rowan, van Duin, Mark, Gregory, Walter M, Davies, Faith E, Brewer, Daniel, Hose, Dirk, Sonneveld, Pieter, Morgan, Gareth J

Συνεισφορές: FORMER_Hematology, Basic (bio-) Medical Sciences

Πηγή: Leuk Lymphoma

Θεματικοί όροι: Risk, 0301 basic medicine, 0303 health sciences, Gene Expression Profiling, 4. Education, Multiple Myeloma/genetics, stem cell transplantation, Transplantation, Autologous, 3. Good health, Gene Expression Regulation, Neoplastic, 03 medical and health sciences, Transcriptome/physiology, Recurrence, Gene Expression Regulation, Neoplastic/physiology, Humans, EMC MM-02-41-03, Multiple Myeloma, Transcriptome, 10. No inequality, In Situ Hybridization, Fluorescence, risk, Original Articles: Clinical, Stem Cell Transplantation

Περιγραφή αρχείου: application/msword

Σύνδεσμος πρόσβασης: https://www.tandfonline.com/doi/pdf/10.3109/10428194.2014.911863?needAccess=true
https://pubmed.ncbi.nlm.nih.gov/24913504
https://pure.eur.nl/en/publications/9e4f7f40-e8c7-4362-a781-f66f390ac6f7
https://doi.org/10.3109/10428194.2014.911863
https://ueaeprints.uea.ac.uk/id/eprint/50242/1/High_Risk_main_2nd_revision.doc
https://biblio.vub.ac.be/vubir/a-gene-expression-based-predictor-for-high-risk-myeloma-treated-with-intensive-therapy-and-autologous-stem-cell-rescue(e851fd12-831d-4a88-b4b7-a53e33af8f1f).html

The Neuronal Activity-Driven Transcriptome

Συγγραφείς: Benito, Eva, Barco, Angel

Συνεισφορές: Ministerio de Ciencia e Innovación (España), Generalitat Valenciana, Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]

Πηγή: Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
Molecular neurobiology 51(3), 1071-1088 (2014). doi:10.1007/s12035-014-8772-z

Θεματικοί όροι: Neurons, 0301 basic medicine, 0303 health sciences, Genome-Wide Association Study: trends, Gene Expression Profiling, 4. Education, Transcriptome: physiology, 03 medical and health sciences, Animals, Humans, Gene Expression Profiling: trends, Transcriptome, Neurons: physiology, Genome-Wide Association Study

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/24935719
http://hdl.handle.net/10261/338505
https://pub.dzne.de/record/137933

Selection for stress-induced analgesia affects the mouse hippocampal transcriptome

Συγγραφείς: Pawel, Lisowski, Adrian M, Stankiewicz, Joanna, Goscik, Marek, Wieczorek, Lech, Zwierzchowski, Artur H, Swiergiel

Πηγή: Journal of Molecular Neuroscience. 47:101-112

Θεματικοί όροι: Pain threshold - physiology, Male, Pain Threshold, hippocampus, Somatosensory disorders - genetics, neurotensin, analgesia, psychological - genetics, Stress, Hippocampus, Transcriptome - physiology, Hippocampus - physiology, stress, Mice, 03 medical and health sciences, 0302 clinical medicine, Somatosensory Disorders, Animals, Female, Transcriptome, microarrays, transcriptome, Stress, Psychological

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/22173874
https://link.springer.com/content/pdf/10.1007/s12031-011-9692-2.pdf
https://doi.org/10.1007/s12031-011-9692-2

Transcriptional Mechanisms of EphA7 Gene Expression in the Developing Cerebral Cortex

Συγγραφείς: Pietri, Sandra, Dimidschstein, Jordane, Tiberi, Luca, Sotiropoulou, Panagiota A., Bilheu, Angéline, Goffinet, André, Achouri, Younes, Tissir, Fadel, Blanpain, Cédric, Jacquemin, Patrick, Vanderhaeghen, Pierre

Πηγή: Cerebral cortex, 22 (7

Θεματικοί όροι: EphA7 -- metabolism, Transcriptional Activation, 0301 basic medicine, Mice, 03 medical and health sciences, Transcriptome -- physiology, Animals, Gene Expression Regulation, Developmental -- physiology, Transcription Factors -- metabolism, Cerebral Cortex, 0303 health sciences, cortex development, Gene Expression Regulation, Developmental, Receptor, EphA7, Sciences bio-médicales et agricoles, Receptor, EphA7 -- metabolism, Transcriptional Activation -- physiology, ephrin, Cerebral Cortex -- embryology -- metabolism, gradient, Gene Expression Regulation, Transcription Factors, Transcriptome, Cognitive Neuroscience, Cellular and Molecular Neuroscience, Developmental -- physiology, Receptor

Περιγραφή αρχείου: 1 full-text file(s): application/pdf; application/pdf

Σύνδεσμος πρόσβασης: https://academic.oup.com/cercor/article-pdf/22/7/1678/17306640/bhr245.pdf
https://pubmed.ncbi.nlm.nih.gov/21940705
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/141648
https://dipot.ulb.ac.be/dspace/bitstream/2013/141648/3/doi_125011.pdf
https://academic.oup.com/cercor/article/22/7/1678/294114
https://doi.org/10.1093/cercor/bhr245
https://hdl.handle.net/11572/149474

Mating system manipulation and the evolution of sex-biased gene expression in Drosophila

Συγγραφείς: Paris Veltsos, Yongxiang Fang, Andrew R. Cossins, Rhonda R. Snook, Michael G. Ritchie

Συνεισφορές: Biology, NERC, University of St Andrews.School of Biology, University of St Andrews.Centre for Biological Diversity, University of St Andrews.Institute of Behavioural and Neural Sciences

Πηγή: Nat Commun
NATURE COMMUNICATIONS
Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017)
Nature Communications.-Springer Science and Business Media LLC.-2017, vol. 8, no. 1
Nature communications, vol. 8, no. 1, pp. 2072

Θεματικοί όροι: Male, 0301 basic medicine, QH301 Biology, Science, Genes, Insect, QH426 Genetics, Article, Evolution, Molecular, QH301, 03 medical and health sciences, 5. Gender equality, Animals, 10. No inequality, QH426, R2C, Sex Characteristics, 0303 health sciences, Reproduction, DAS, Mating Preference, Animal, Gene Expression Regulation, 13. Climate action, Drosophila, Female, BDC, Drosophila/physiology, Gene Expression Regulation/physiology, Genes, Insect/genetics, Reproduction/genetics, Transcriptome/physiology, Transcriptome

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://www.nature.com/articles/s41467-017-02232-6.pdf
https://pubmed.ncbi.nlm.nih.gov/29233985
https://doaj.org/article/e5a08303bfc746d0af3a1ed4a77f0e32
https://sonar.ch/global/documents/34811
https://serval.unil.ch/notice/serval:BIB_27D96C8420F0
https://serval.unil.ch/resource/serval:BIB_27D96C8420F0.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_27D96C8420F09
https://biblio.vub.ac.be/vubir/mating-system-manipulation-and-the-evolution-of-sexbiased-gene-expression-in-drosophila(de972ccf-d362-4346-9461-930692ce8ef6).html
https://www.scopus.com/pages/publications/85037721133
https://hdl.handle.net/10023/12318

Evidence for transcript networks composed of chimeric RNAs in human cells

Συγγραφείς: Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent

Συνεισφορές: Borel, Christelle, Ucla, Catherine, Martin, David, Reymond, Alexandre, Antonarakis, Stylianos

Πηγή: ISSN: 1932-6203 ; PloS one, vol. 7, no. 1 (2012) e28213.

Θεματικοί όροι: info:eu-repo/classification/ddc/576.5, Algorithms, Cells/metabolism, Chimerin Proteins/chemistry/genetics, Chromosomes, Human, Pair 1/genetics, Female, Gene Expression Profiling, Gene Regulatory Networks/genetics/physiology, Humans, Male, Microarray Analysis/methods, Models, Biological, Nucleic Acid Amplification Techniques/methods, RNA/genetics/physiology, RNA Isoforms/chemistry/genetics/metabolism, Transcription, Genetic/genetics, Transcriptome/physiology, Validation Studies as Topic

Relation: info:eu-repo/semantics/altIdentifier/pmid/22238572; unige:34649

Διαθεσιμότητα: https://archive-ouverte.unige.ch/unige:34649

Cell type prioritization in single-cell data.

Συγγραφείς: Skinnider, M.A., Squair, J.W., Kathe, C., Anderson, M.A., Gautier, M., Matson, KJE, Milano, M., Hutson, T.H., Barraud, Q., Phillips, A.A., Foster, L.J., La Manno, G., Levine, A.J., Courtine, G.

Θεματικοί όροι: Animals, Chromatin/genetics, Chromatin/metabolism, Computational Biology/methods, Databases, Genetic, Gene Expression Profiling/methods, Machine Learning, Mice, Nerve Net/metabolism, Rats, Sequence Analysis, RNA, Single-Cell Analysis/methods, Transcriptome/genetics, Transcriptome/physiology, Walking/physiology

Περιγραφή αρχείου: application/pdf

Relation: Nature Biotechnology; https://iris.unil.ch/handle/iris/82290; serval:BIB_6B2FE5BC2C8B; 000550630500001

Διαθεσιμότητα: https://iris.unil.ch/handle/iris/82290
https://doi.org/10.1038/s41587-020-0605-1

Molecular and chemical dialogues in bacteria-protozoa interactions

Συγγραφείς: Song, C., Mazzola, M., Cheng, X., Oetjen, J., Alexandrov, T., Dorrestein, P., Watrous, J., van der Voort, M., Raaijmakers, J.M.

Πηγή: Sci Rep
Scientific Reports

Θεματικοί όροι: 0301 basic medicine, Naegleria - metabolism, Pseudomonas fluorescens, Lipopeptides - genetics, Transcriptome - physiology, Article, dictyostelium-discoideum, Pseudomonas fluorescens - genetics, Lipopeptides, 03 medical and health sciences, strain, Putrescine, Naegleria - genetics, 0303 health sciences, Lipopeptides - metabolism, Naegleria, 15. Life on land, aeruginosa, caenorhabditis-elegans, Putrescine - metabolism, tetr family, international, Pseudomonas fluorescens - metabolism, pseudomonas-fluorescens cha0, imaging mass-spectrometry, spatial segmentation, biosynthesis, rhizosphere, Transcriptome

Σύνδεσμος πρόσβασης: https://www.nature.com/articles/srep12837.pdf
https://pubmed.ncbi.nlm.nih.gov/26246193

Riding the spermatogenic wave: profiling gene expression within neonatal germ and sertoli cells during a synchronized initial wave of spermatogenesis in mice

Συγγραφείς: Evans, Elizabeth, Hogarth, Cathryn, Mitchell, Debra, Griswold, Michael

Πηγή: Biology of reproduction. 90(5)

Θεματικοί όροι: Male, Knockout, Gene Expression Profiling - methods, RNA - chemistry, RNA - genetics, Sertoli Cells - physiology, Spermatogenesis - physiology, Mice, Transgenic, Tretinoin, Diamines, Tretinoin - pharmacology, Transgenic, Spermatogonia - cytology, Transcriptome - physiology, Testis - physiology, Sertoli Cells - cytology, Mice, Testis, Animals, Developmental - physiology, Testis - cytology, Spermatogenesis, Oligonucleotide Array Sequence Analysis, Mice, Knockout, Sertoli Cells, Gene Expression Profiling, Computational Biology, Gene Expression Regulation, Developmental, Spermatogonia - physiology, Newborn, Immunohistochemistry, Spermatogonia, Gene Expression Regulation, Animals, Newborn, RNA, Female, Transcriptome, Diamines - pharmacology

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/24719255

The neuronal activity-driven transcriptome.

Συγγραφείς: Benito, Eva, Barco, Angel

Πηγή: Molecular neurobiology 51(3), 1071-1088 (2014). doi:10.1007/s12035-014-8772-z

Θεματικοί όροι: info:eu-repo/classification/ddc/570, Animals, Gene Expression Profiling: trends, Genome-Wide Association Study: trends, Humans, Neurons: physiology, Transcriptome: physiology

Θέμα γεωγραφικό: DE

Relation: info:eu-repo/semantics/altIdentifier/pmid/pmid:24935719; info:eu-repo/semantics/altIdentifier/issn/0893-7648; info:eu-repo/semantics/altIdentifier/issn/1559-1182; https://pub.dzne.de/record/137933

Διαθεσιμότητα: https://pub.dzne.de/record/137933
https://pub.dzne.de/search?p=id:%22DZNE-2020-04255%22

Transcriptional mechanisms of EphA7 gene expression in the developing cerebral cortex.

Συγγραφείς: Pietri, Sandra, Dimidschstein, Jordane, Tiberi, Luca, Sotiropoulou, Panagiota A, Bilheu, Angeline, Goffinet, André, Achouri, Younes, Tissir, Fadel, Blanpain, Cédric, Jacquemin, Patrick, Vanderhaeghen, Pierre

Πηγή: Cerebral cortex, 22 (7

Θεματικοί όροι: Sciences bio-médicales et agricoles, Animals, Cerebral Cortex -- embryology -- metabolism, Gene Expression Regulation, Developmental -- physiology, Mice, Receptor, EphA7 -- metabolism, Transcription Factors -- metabolism, Transcriptional Activation -- physiology, Transcriptome -- physiology, cortex development, ephrin, gradient

Περιγραφή αρχείου: 1 full-text file(s): application/pdf

Relation: uri/info:doi/10.1093/cercor/bhr245; uri/info:pii/bhr245; uri/info:pmid/21940705; uri/info:scp/84862846023; https://dipot.ulb.ac.be/dspace/bitstream/2013/141648/3/doi_125011.pdf

Διαθεσιμότητα: https://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/141648
https://dipot.ulb.ac.be/dspace/bitstream/2013/141648/3/doi_125011.pdf