-
1Academic Journal
Authors: Scarlett, Virginia T, Curty, Renata Gonçalves, Gomez, Juanita, Langdon, Laura, Janée, Greg, Budden, Amber E
Source: PLOS ONE. 21(6)
Subject Terms: 46 Information and Computing Sciences (for-2020), 4610 Library and Information Studies (for-2020), Generic health relevance (hrcs-hc), Humans (mesh), Universities (mesh), Software (mesh), California (mesh), Surveys and Questionnaires (mesh), Humans (mesh), California (mesh), Software (mesh), Surveys and Questionnaires (mesh), Universities (mesh), General Science & Technology (science-metrix)
File Description: application/pdf
-
2Academic Journal
Authors: Tsai, Cheng-Hung, Stajich, Jason E
Source: G3: Genes, Genomes, Genetics. 16(5)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3104 Evolutionary Biology (for-2020), 3105 Genetics (for-2020), Genetics (rcdc), Human Genome (rcdc), Generic health relevance (hrcs-hc), Phylogeny (mesh), Software (mesh), Genomics (mesh), Molecular Sequence Annotation (mesh), Genome (mesh), Hidden Markov Models (mesh), Markov Chains (mesh), Algorithms (mesh), Computational Biology (mesh), phylogenetics, phylogenomics, software, orthology, hidden Markov models, python, bacteria, fungi, PEQG2026, Markov Chains (mesh), Computational Biology (mesh), Genomics (mesh), Phylogeny (mesh), Genome (mesh), Algorithms (mesh), Software (mesh), Molecular Sequence Annotation (mesh), Hidden Markov Models (mesh), PEQG2026, bacteria, fungi, hidden Markov models, orthology, phylogenetics, phylogenomics, python, software, Phylogeny (mesh), Software (mesh), Genomics (mesh), Molecular Sequence Annotation (mesh), Genome (mesh), Hidden Markov Models (mesh), Markov Chains (mesh), Algorithms (mesh), Computational Biology (mesh), 0604 Genetics (for), 3101 Biochemistry and cell biology (for-2020), 3105 Genetics (for-2020), 4905 Statistics (for-2020)
File Description: application/pdf
-
3Academic Journal
Authors: Zhang, Le, Cassol, Daniela, Gongol, Brendan, Girke, Thomas
Source: NAR Genomics and Bioinformatics. 8(2)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Data Science (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Bioengineering (rcdc), Generic health relevance (hrcs-hc), Workflow (mesh), Software (mesh), Reproducibility of Results (mesh), Data Analysis (mesh), Reproducibility of Results (mesh), Software (mesh), Workflow (mesh), Data Analysis (mesh), Workflow (mesh), Software (mesh), Reproducibility of Results (mesh), Data Analysis (mesh), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)
File Description: application/pdf
-
4Academic Journal
Authors: Pittman, Maureen, Lee, Kihyun, Felix, Franco, Huang, Yu, Lam, Adrienne, Costa, Mauro W, Srivastava, Deepak, Pollard, Katherine S
Source: Genome Research. 36(2)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Congenital Structural Anomalies (rcdc), Human Genome (rcdc), Cardiovascular (rcdc), Congenital Heart Disease (rcdc), Genetics (rcdc), Prevention (rcdc), Biotechnology (rcdc), Genetic Testing (rcdc), Pediatric Research Initiative (rcdc), Rare Diseases (rcdc), Heart Disease (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), 4.1 Discovery and preclinical testing of markers and technologies (hrcs-rac), Cardiovascular (hrcs-hc), Heart Defects, Congenital (mesh), Humans (mesh), Genetic Predisposition to Disease (mesh), Software (mesh), Multifactorial Inheritance (mesh), Animals (mesh), Exome Sequencing (mesh), Mice (mesh), Epistasis, Genetic (mesh), Phenotype (mesh), Animals (mesh), Humans (mesh), Mice (mesh), Heart Defects, Congenital (mesh), Genetic Predisposition to Disease (mesh), Epistasis, Genetic (mesh), Multifactorial Inheritance (mesh), Phenotype (mesh), Software (mesh), Exome Sequencing (mesh), Heart Defects, Congenital (mesh), Humans (mesh), Genetic Predisposition to Disease (mesh), Software (mesh), Multifactorial Inheritance (mesh), Animals (mesh), Exome Sequencing (mesh), Mice (mesh), Epistasis, Genetic (mesh), Phenotype (mesh), 06 Biological Sciences (for), 11 Medical and Health Sciences (for), Bioinformatics (science-metrix), 3105 Genetics (for-2020)
Access URL: https://escholarship.org/uc/item/3hf2446z
-
5Academic Journal
Authors: Draisma, Arjan, Loureiro, Catarina, Louwen, Nico LL, Kautsar, Satria A, Navarro-Muñoz, Jorge C, Doering, Drew T, Mouncey, Nigel J, Medema, Marnix H
Source: Nature Communications. 17(1)
Subject Terms: 3107 Microbiology (for-2020), 31 Biological Sciences (for-2020), Microbiome (rcdc), Human Genome (rcdc), Genetics (rcdc), Infection (hrcs-hc), Multigene Family (mesh), Clustering Algorithms (mesh), Databases, Genetic (mesh), Software (mesh), Computational Biology (mesh), Microbiota (mesh), Genome, Bacterial (mesh), Cluster Analysis (mesh), Cluster Analysis (mesh), Computational Biology (mesh), Genome, Bacterial (mesh), Multigene Family (mesh), Software (mesh), Databases, Genetic (mesh), Microbiota (mesh), Clustering Algorithms (mesh), Multigene Family (mesh), Clustering Algorithms (mesh), Databases, Genetic (mesh), Software (mesh), Computational Biology (mesh), Microbiota (mesh), Genome, Bacterial (mesh), Cluster Analysis (mesh)
File Description: application/pdf
-
6Academic Journal
Authors: Yaniv, Ziv, Anidi, Ifeanyichukwu U, Arakkal, Leanne, Arroyo-Mejías, Armando J, Beuschel, Rebecca T, Börner, Katy, Chu, Colin J, Clark, Beatrice H, Clatworthy, Menna R, Colautti, Jake, Coscia, Fabian, Croteau, Joshua, Denha, Saven, Dever, Rose, Dutra, Walderez O, Fritzsche, Sonja, Fullam, Spencer, Gerner, Michael Y, Gola, Anita, Gollob, Kenneth J, Hernandez, Jonathan M, Hor, Jyh Liang, Ichise, Hiroshi, Jing, Zhixin, Jonigk, Danny, Kandov, Evelyn, Kastenmüller, Wolfgang, Koenig, Joshua FE, Kothurkar, Aanandita, Kortekaas, Rosa K, Kreins, Alexandra Y, Lamborn, Ian T, Lin, Yuri, Morais, Katia Luciano Pereira, Lunich, Aleksandra, Luz, Jean CS, MacDonald, Ryan B, Makranz, Chen, Maltez, Vivien I, McDonough, John E, Moriarty, Ryan V, Ocampo-Godinez, Juan M, Olyntho, Vitoria Murakami, Oxenius, Annette, Padhan, Kartika, Remmert, Kirsten, Richoz, Nathan, Schrom, Edward C, Shang, Wanjing, Shi, Lihong, Shih, Rochelle M, Speranza, Emily, Stierli, Salome, Teichmann, Sarah A, Verse, Tibor Z, Vierhout, Megan, Wachter, Brianna T, Wade-Vallance, Adam K, Williams, Margaret, Zangger, Nathan, Germain, Ronald N, Radtke, Andrea J
Source: ELIFE. 14
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Bioengineering (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), 2.6 Resources and infrastructure (aetiology) (hrcs-rac), Generic health relevance (hrcs-hc), Fluorescent Antibody Technique (mesh), Knowledge Bases (mesh), Animals (mesh), Humans (mesh), Software (mesh), Information Dissemination (mesh), spatial biology, reagent validation, multiplexed optical imaging, open science, Human, Mouse, Rhesus macaque, Xenopus, Zebrafish, Animals (mesh), Humans (mesh), Fluorescent Antibody Technique (mesh), Information Dissemination (mesh), Software (mesh), Knowledge Bases (mesh), cell biology, human, mouse, multiplexed optical imaging, open science, reagent validation, rhesus macaque, spatial biology, xenopus, zebrafish, Fluorescent Antibody Technique (mesh), Knowledge Bases (mesh), Animals (mesh), Humans (mesh), Software (mesh), Information Dissemination (mesh), 0601 Biochemistry and Cell Biology (for), 31 Biological sciences (for-2020), 32 Biomedical and clinical sciences (for-2020), 42 Health sciences (for-2020)
File Description: application/pdf
-
7Academic Journal
Authors: Karatzas, Evangelos, Beracochea, Martin, Baltoumas, Fotis A, Aplakidou, Eleni, Richardson, Lorna, Yates, James A Fellows, Lundin, Daniel, community, nf-core, Buluç, Aydin, Kyrpides, Nikos C, Georgakopoulos-Soares, Ilias, Pavlopoulos, Georgios A, Finn, Robert D
Source: GigaScience. 15
Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 31 Biological Sciences (for-2020), Genetics (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Generic health relevance (hrcs-hc), Proteins (mesh), Software (mesh), Metagenomics (mesh), Computational Biology (mesh), Databases, Protein (mesh), Sequence Alignment (mesh), Algorithms (mesh), Amino Acid Sequence (mesh), protein families, workflow, profile hidden Markov model, metagenomics, Nextflow, nf-core, nf-core community, Proteins (mesh), Sequence Alignment (mesh), Computational Biology (mesh), Amino Acid Sequence (mesh), Algorithms (mesh), Software (mesh), Databases, Protein (mesh), Metagenomics (mesh), Nextflow, metagenomics, nf-core, profile hidden Markov model, protein families, workflow, Proteins (mesh), Software (mesh), Metagenomics (mesh), Computational Biology (mesh), Databases, Protein (mesh), Sequence Alignment (mesh), Algorithms (mesh), Amino Acid Sequence (mesh)
File Description: application/pdf
-
8Academic Journal
Authors: Moxon, Sierra AT, Solbrig, Harold, Harris, Nomi L, Kalita, Patrick, Miller, Mark A, Patil, Sujay, Schaper, Kevin, Bizon, Chris, Caufield, J Harry, Cuesta, Silvano Cirujano, Cox, Corey, Dekervel, Frank, Dooley, Damion M, Duncan, William D, Fliss, Tim, Gehrke, Sarah, Graefe, Adam SL, Hegde, Harshad, Ireland, AJ, Jacobsen, Julius OB, Krishnamurthy, Madan, Kroll, Carlo, Linke, David, Ly, Ryan, Matentzoglu, Nicolas, Overton, James A, Saunders, Jonny L, Unni, Deepak R, Vaidya, Gaurav, Vierdag, Wouter-Michiel AM, Bruskiewich, Richard M, Carbon, Seth, Cavanna, Eric, Chandonia, John-Marc, Cholia, Shreyas, Dichter, Ben, Eloe-Fadrosh, Emiley A, Emonet, Vincent, Essaid, Shahim, Yates, James A Fellows, Flack, Joseph, Ghosh, Satrajit S, Goutte-Gattat, Damien, Jarecka, Dorota, Jiao, Dazhi, Joachimiak, Marcin P, Korolev, Vlad, Lapkin, Volodymyr, McLoughlin, Noel, Miller, Sierra D, Milton, Michael, Moore, Josh, Munoz-Torres, Moni, Nichols, B Nolan, Reese, Justin T, Savage, Victoria, Stroemert, Philip, Teoh, Jeremy, Thessen, Anne, To, Isaac, Trivedi, Puja, Vialard, Vincent, Whetzel, Trish, Ruebel, Oliver, Chute, Christopher G, Brush, Matthew H, Haendel, Melissa A, Mungall, Christopher J
Source: GigaScience. 15
Subject Terms: 4605 Data Management and Data Science (for-2020), 46 Information and Computing Sciences (for-2020), Networking and Information Technology R&D (NITRD) (rcdc), Data Science (rcdc), Software (mesh), Programming Languages (mesh), Humans (mesh), Computational Biology (mesh), Information Dissemination (mesh), data modeling, FAIR data, open source, open data, data integration, schema, AI-ready data, semantic modeling, ontologies, LinkML Community Contributors, Humans (mesh), Information Dissemination (mesh), Computational Biology (mesh), Software (mesh), Programming Languages (mesh), AI-ready data, FAIR data, data integration, data modeling, ontologies, open data, open source, schema, semantic modeling, Software (mesh), Programming Languages (mesh), Humans (mesh), Computational Biology (mesh), Information Dissemination (mesh)
File Description: application/pdf
-
9Academic Journal
Source: ACS Synthetic Biology. 15(1)
Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 31 Biological Sciences (for-2020), Genetics (rcdc), Bioengineering (rcdc), Generic health relevance (hrcs-hc), Algorithms (mesh), RNA (mesh), DNA (mesh), Software (mesh), Base Pairing (mesh), Thermodynamics (mesh), Nucleic Acid Conformation (mesh), RNA, DNA, 2 ' OMe-RNA, mixedmaterials, hybrid case, chimeric case, complex ensemble, test tube ensemble, salt correction, sodium, dynamic programming algorithm, complexpartition function, equilibrium base-pairing probabilities, equilibrium complex concentrations, minimum free energysecondary structure, Boltzmann-sampled secondary structures, NUPACK, DNA (mesh), RNA (mesh), Nucleic Acid Conformation (mesh), Base Pairing (mesh), Algorithms (mesh), Thermodynamics (mesh), Software (mesh), 2′OMe-RNA, Boltzmann-sampled secondary structures, DNA, NUPACK, RNA, chimeric case, complex ensemble, complex partition function, dynamic programming algorithm, equilibrium base-pairing probabilities, equilibrium complex concentrations, hybrid case, minimum free energy secondary structure, mixed materials, salt correction, sodium, test tube ensemble, Algorithms (mesh), RNA (mesh), DNA (mesh), Software (mesh), Base Pairing (mesh), Thermodynamics (mesh), Nucleic Acid Conformation (mesh), 0304 Medicinal and Biomolecular Chemistry (for), 0601 Biochemistry and Cell Biology (for), 0903 Biomedical Engineering (for), 3101 Biochemistry and cell biology (for-2020), 3102 Bioinformatics and computational biology (for-2020)
File Description: application/pdf
-
10Academic Journal
Authors: van Workum, Dirk-Jan M, Dey, Kuntal K, Kozik, Alexander, Lavelle, Dean O, de Ridder, Dick, Schranz, M Eric, Michelmore, Richard W, Smit, Sandra
Source: NAR Genomics and Bioinformatics. 8(1)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Human Genome (rcdc), Genetics (rcdc), 1.5 Resources and infrastructure (underpinning) (hrcs-rac), Software (mesh), Workflow (mesh), Molecular Sequence Annotation (mesh), Humans (mesh), Genomics (mesh), Animals (mesh), Quality Control (mesh), Genome (mesh), Animals (mesh), Humans (mesh), Genomics (mesh), Genome (mesh), Quality Control (mesh), Software (mesh), Workflow (mesh), Molecular Sequence Annotation (mesh), Software (mesh), Workflow (mesh), Molecular Sequence Annotation (mesh), Humans (mesh), Genomics (mesh), Animals (mesh), Quality Control (mesh), Genome (mesh), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)
File Description: application/pdf
-
11Academic Journal
Authors: Saghaei, Shahram, Siemers, Malte, Ossetek, Kilian L, Richter, Stephan, Edwards, Robert A, Roux, Simon, Zielezinski, Andrzej, Dutilh, Bas E, Marz, Manja, Cassman, Noriko A
Source: Nucleic Acids Research. 54(D1)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Data Science (rcdc), Biodefense (rcdc), Emerging Infectious Diseases (rcdc), Infectious Diseases (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Infection (hrcs-hc), Viruses (mesh), Software (mesh), Computational Biology (mesh), Metadata (mesh), Internet (mesh), High-Throughput Nucleotide Sequencing (mesh), Databases, Genetic (mesh), Data Curation (mesh), Genome, Viral (mesh), Viruses (mesh), Computational Biology (mesh), Genome, Viral (mesh), Internet (mesh), Software (mesh), Databases, Genetic (mesh), High-Throughput Nucleotide Sequencing (mesh), Data Curation (mesh), Metadata (mesh), Viruses (mesh), Software (mesh), Computational Biology (mesh), Metadata (mesh), Internet (mesh), High-Throughput Nucleotide Sequencing (mesh), Databases, Genetic (mesh), Data Curation (mesh), Genome, Viral (mesh), 05 Environmental Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Developmental Biology (science-metrix), 31 Biological sciences (for-2020), 34 Chemical sciences (for-2020), 41 Environmental sciences (for-2020)
File Description: application/pdf
-
12Academic Journal
Authors: Mak, Lauren, Tierney, Braden, Wei, Wei, Ronkowski, Cynthia, Toscan, Rodolfo Brizola, Turhan, Berk, Toomey, Michael, Andrade-Martínez, Juan Sebastian, Fu, Chenlian, Lucaci, Alexander G, Solano, Arthur Henrique Barrios, Setubal, João Carlos, Henriksen, James R, Zimmerman, Sam, Kopbayeva, Malika, Noyvert, Anna, Iwan, Zana, Kar, Shraman, Nakazawa, Nikita, Meleshko, Dmitry, Horyslavets, Dmytro, Kantsypa, Valeriia, Frolova, Alina, Kahles, Andre, Danko, David, Elhaik, Eran, Labaj, Pawel, Mangul, Serghei, Abdullah, Natasha, Abraao, Marcos, Adel, Ait-hamlat, Afaq, Muhammad, Al-Quaddoomi, Faisal S, Alam, Ireen, Albuquerque, Gabriela E, Alexiev, Alex, Ali, Kalyn, Alvarado-Arnez, Lucia E, Aly, Sarh, Amachee, Jennifer, Amorim, Maria G, Ampadu, Majelia, Amran, Muhammad Al-Fath, An, Nala, Andrew, Watson, Andrianjakarivony, Harilanto, Angelov, Michael, Antelo, Verónica, Aquino, Catharine, Aranguren, Álvaro, Araujo, Luiza F, Arevalo, Hitler Francois Vasquez, Arevalo, Jenny, Arnan, Carme, Arnez, Lucia Elena Alvarado, Arredondo, Fernanda, Arthur, Matthew, Asenjo, Freddy, Aung, Thomas Saw, Auvinet, Juliette, Aventin, Nuria, Ayaz, Sadaf, Baburyan, Silva, Bakere, Abd-Manaaf, Bakhl, Katrin, Bartelli, Thais F, Batdelger, Erdenetsetseg, Baudon, François, Becher, Kevin, Bello, Carla, Benchouaia, Médine, Benisty, Hannah, Benoiston, Anne-Sophie, Benson, Joseph, Benítez, Diego, Bernardes, Juliana, Bertrand, Denis, Beurmann, Silvia, Bhattacharyya, Malay, Bitard-Feildel, Tristan, Bittner, Lucie, Black, Christina, Blanc, Guillaume, Blyther, Brittany, Bode, Toni, Boeri, Julia, Boldgiv, Bazartseren, Bolzli, Kevin, Bordigoni, Alexia, Borrelli, Ciro, Borràs, Sílvia, Bouchard, Sonia, Bouly, Jean-Pierre, Boyd, Alicia, Breschi, Alessandra, Brindefalk, Björn, Brion, Christian, Briones, Alan, Buczansla, Paulina, Burke, Catherine M
Source: NAR Genomics and Bioinformatics. 8(1)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Data Science (rcdc), Bioengineering (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Generic health relevance (hrcs-hc), Metagenomics (mesh), Software (mesh), Workflow (mesh), Computational Biology (mesh), Microbiota (mesh), International MetaSUB Consortium, Computational Biology (mesh), Software (mesh), Metagenomics (mesh), Workflow (mesh), Microbiota (mesh), Metagenomics (mesh), Software (mesh), Workflow (mesh), Computational Biology (mesh), Microbiota (mesh), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)
Access URL: https://escholarship.org/uc/item/7m7883w7
-
13Academic Journal
Authors: Fiamenghi, Mateus B, Camargo, Antonio Pedro, Chasapi, Iro N, Baltoumas, Fotis A, Roux, Simon, Egorov, Artyom A, Aplakidou, Eleni, Ndela, Eric Olo, Vasquez, Yumary M, Chen, I-Min A, Palaniappan, Krishna, Reddy, TBK, Mukherjee, Supratim, Ivanova, Natalia N, Schulz, Frederik, Woyke, Tanja, Eloe-Fadrosh, Emiley A, Pavlopoulos, Georgios A, Kyrpides, Nikos C
Source: Nucleic Acids Research. 54(D1)
Subject Terms: 3107 Microbiology (for-2020), 31 Biological Sciences (for-2020), Infectious Diseases (rcdc), Biotechnology (rcdc), Genetics (rcdc), Biodefense (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Emerging Infectious Diseases (rcdc), 2.2 Factors relating to the physical environment (hrcs-rac), Infection (hrcs-hc), 3 Good Health and Well Being (sdg), Genome, Viral (mesh), Viruses (mesh), Databases, Genetic (mesh), Metagenomics (mesh), Phylogeny (mesh), Biodiversity (mesh), Genetic Variation (mesh), Metagenome (mesh), Software (mesh), Viruses (mesh), Biodiversity (mesh), Phylogeny (mesh), Genome, Viral (mesh), Software (mesh), Databases, Genetic (mesh), Genetic Variation (mesh), Metagenome (mesh), Metagenomics (mesh), Genome, Viral (mesh), Viruses (mesh), Databases, Genetic (mesh), Metagenomics (mesh), Phylogeny (mesh), Biodiversity (mesh), Genetic Variation (mesh), Metagenome (mesh), Software (mesh), 05 Environmental Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Developmental Biology (science-metrix), 31 Biological sciences (for-2020), 34 Chemical sciences (for-2020), 41 Environmental sciences (for-2020)
File Description: application/pdf
-
14Academic Journal
Authors: Alexander, Leila T, Follonier, Océane M, Kryshtafovych, Andriy, Abesamis, Kim, Bibi‐Triki, Sabrina, Box, Henry G, Breyton, Cécile, Bringel, Françoise, Carrique, Loic, d'Acapito, Alessio, Dong, Gang, DuBois, Rebecca, Fass, Deborah, Fiesco, Juliana Martinez, Fox, Daniel R, Grimes, Jonathan M, Grinter, Rhys, Jenkins, Matthew, Kamyshinsky, Roman, Keown, Jeremy R, Lackner, Gerald, Lammers, Michael, Liu, Shiheng, Lovering, Andrew L, Malinauskas, Tomas, Masquida, Benoît, Palm, Gottfried J, Siebold, Christian, Su, Tiantian, Zhang, Ping, Zhou, Z Hong, Fidelis, Krzysztof, Topf, Maya, Moult, John, Schwede, Torsten
Source: Proteins Structure Function and Bioinformatics. 94(1)
Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 31 Biological Sciences (for-2020), Proteins (mesh), Computational Biology (mesh), Protein Conformation (mesh), Models, Molecular (mesh), Protein Processing, Post-Translational (mesh), Humans (mesh), Databases, Protein (mesh), Software (mesh), Protein Binding (mesh), Amino Acid Motifs (mesh), CASP, cryo-EM, protein structure prediction, X-ray crystallography, Humans (mesh), Proteins (mesh), Computational Biology (mesh), Protein Processing, Post-Translational (mesh), Amino Acid Motifs (mesh), Protein Conformation (mesh), Protein Binding (mesh), Models, Molecular (mesh), Software (mesh), Databases, Protein (mesh), CASP, X‐ray crystallography, cryo‐EM, protein structure prediction, Proteins (mesh), Computational Biology (mesh), Protein Conformation (mesh), Models, Molecular (mesh), Protein Processing, Post-Translational (mesh), Humans (mesh), Databases, Protein (mesh), Software (mesh), Protein Binding (mesh), Amino Acid Motifs (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 49 Mathematical sciences (for-2020)
Access URL: https://escholarship.org/uc/item/1829g0pd
-
15Academic Journal
Authors: Li, Bingjie, Lin, Runyu, Ni, Tianhao, Yan, Guanao, Burns, Mannix, Li, Jingyi Jessica, Yao, Zhigang
Source: Nature Communications. 17(1)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Bioengineering (rcdc), Human Genome (rcdc), Genetics (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Animals (mesh), Humans (mesh), Cluster Analysis (mesh), Gene Expression Profiling (mesh), Computational Biology (mesh), Cell Lineage (mesh), Algorithms (mesh), Software (mesh), Workflow (mesh), Single-Cell Analysis (mesh), Single-Cell Analysis (mesh), Humans (mesh), Workflow (mesh), Algorithms (mesh), Software (mesh), Cluster Analysis (mesh), Computational Biology (mesh), Cell Lineage (mesh), Gene Expression Profiling (mesh), Animals (mesh)
File Description: application/pdf
-
16Academic Journal
Authors: Huang, Jingong, Ma, Rui, Strobel, Michael, Hu, Yangyang, Ye, Tiantian, Jiang, Tao, Ma, Wenxiu
Source: Bioinformatics. 41(12)
Subject Terms: 46 Information and Computing Sciences (for-2020), 31 Biological Sciences (for-2020), 4611 Machine Learning (for-2020), Machine Learning and Artificial Intelligence (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Bioengineering (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Single-Cell Analysis (mesh), Chromatin (mesh), Deep Learning (mesh), Humans (mesh), Software (mesh), Computational Biology (mesh), Algorithms (mesh), Chromatin (mesh), Humans (mesh), Computational Biology (mesh), Algorithms (mesh), Software (mesh), Single-Cell Analysis (mesh), Deep Learning (mesh), Single-Cell Analysis (mesh), Chromatin (mesh), Deep Learning (mesh), Humans (mesh), Software (mesh), Computational Biology (mesh), Algorithms (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 46 Information and computing sciences (for-2020), 49 Mathematical sciences (for-2020)
File Description: application/pdf
-
17Academic Journal
Authors: Tran, Livia, Nickens, Ryan, Luu, Vinh, Petersdorf, Effie W, Mack, Steven J
Source: International Journal of Immunogenetics. 52(6)
Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Biotechnology (rcdc), Genetics (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), 3 Good Health and Well Being (sdg), Humans (mesh), HLA Antigens (mesh), Alleles (mesh), Gene Frequency (mesh), Software (mesh), Haplotypes (mesh), Computational Biology (mesh), Amino Acids (mesh), frequency distribution, global frequency browser, heatmap, HLA, HLAtools, informatics, SSHAARP, Humans (mesh), Amino Acids (mesh), HLA Antigens (mesh), Computational Biology (mesh), Gene Frequency (mesh), Haplotypes (mesh), Alleles (mesh), Software (mesh), HLA, HLAtools, SSHAARP, frequency distribution, global frequency browser, heatmap, informatics, Humans (mesh), HLA Antigens (mesh), Alleles (mesh), Gene Frequency (mesh), Software (mesh), Haplotypes (mesh), Computational Biology (mesh), Amino Acids (mesh), 0604 Genetics (for), Immunology (science-metrix), 3105 Genetics (for-2020)
File Description: application/pdf
-
18Academic Journal
Authors: Poretsky, Elly, Andorf, Carson M, Sen, Taner Z
Source: Proteins Structure Function and Bioinformatics. 93(12)
Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 31 Biological Sciences (for-2020), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Databases, Protein (mesh), Protein Domains (mesh), Humans (mesh), Computational Biology (mesh), Proteins (mesh), Models, Molecular (mesh), Proteome (mesh), Amino Acid Sequence (mesh), Software (mesh), Protein Structure, Secondary (mesh), Protein Folding (mesh), Animals (mesh), Sequence Analysis, Protein (mesh), AlphaFold2, Pfam, protein functional prediction, protein structure prediction, protein tertiary structure prediction, Animals (mesh), Humans (mesh), Proteins (mesh), Proteome (mesh), Sequence Analysis, Protein (mesh), Computational Biology (mesh), Amino Acid Sequence (mesh), Protein Structure, Secondary (mesh), Protein Folding (mesh), Models, Molecular (mesh), Software (mesh), Databases, Protein (mesh), Protein Domains (mesh), AlphaFold2, Pfam, protein functional prediction, protein structure prediction, protein tertiary structure prediction, Databases, Protein (mesh), Protein Domains (mesh), Humans (mesh), Computational Biology (mesh), Proteins (mesh), Models, Molecular (mesh), Proteome (mesh), Amino Acid Sequence (mesh), Software (mesh), Protein Structure, Secondary (mesh), Protein Folding (mesh), Animals (mesh), Sequence Analysis, Protein (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 49 Mathematical sciences (for-2020)
File Description: application/pdf
-
19Academic Journal
Authors: Astolfi, Maria CT, Yoder, Sam D, Delfa-Lalaguna, Marina, Winegar, Peter H, Holm, Sara KF, Lei, Mengziang, Zhao, Xixi, Tan, Stephen E, Louie, Randy, Hillson, Nathan J, Hudson, Graham A, Keasling, Jay D
Source: ACS Synthetic Biology. 14(10)
Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 31 Biological Sciences (for-2020), 3106 Industrial Biotechnology (for-2020), Networking and Information Technology R&D (NITRD) (rcdc), Biotechnology (rcdc), Genetics (rcdc), Bioengineering (rcdc), Saccharomyces cerevisiae (mesh), Biosynthetic Pathways (mesh), Synthetic Biology (mesh), Gene Library (mesh), Metabolic Engineering (mesh), Software (mesh), Automation (mesh), automation, robotics integration, high-throughputscreen, strain engineering, microbial biosynthesis, metabolic engineering, Saccharomyces cerevisiae (mesh), Gene Library (mesh), Automation (mesh), Software (mesh), Biosynthetic Pathways (mesh), Synthetic Biology (mesh), Metabolic Engineering (mesh), automation, high-throughput screen, metabolic engineering, microbial biosynthesis, robotics integration, strain engineering, Saccharomyces cerevisiae (mesh), Biosynthetic Pathways (mesh), Synthetic Biology (mesh), Gene Library (mesh), Metabolic Engineering (mesh), Software (mesh), Automation (mesh), 0304 Medicinal and Biomolecular Chemistry (for), 0601 Biochemistry and Cell Biology (for), 0903 Biomedical Engineering (for), 3101 Biochemistry and cell biology (for-2020), 3102 Bioinformatics and computational biology (for-2020)
File Description: application/pdf
-
20Academic Journal
Authors: Baele, Guy, Carvalho, Luiz M, Brusselmans, Marius, Dudas, Gytis, Ji, Xiang, McCrone, John T, Lemey, Philippe, Suchard, Marc A, Rambaut, Andrew
Source: Bioinformatics. 41(10)
Subject Terms: 31 Biological Sciences (for-2020), 3104 Evolutionary Biology (for-2020), Infectious Diseases (rcdc), Emerging Infectious Diseases (rcdc), 3 Good Health and Well Being (sdg), Software (mesh), Phylogeny (mesh), SARS-CoV-2 (mesh), Bayes Theorem (mesh), Ebolavirus (mesh), Algorithms (mesh), Humans (mesh), Computational Biology (mesh), COVID-19 (mesh), Humans (mesh), Bayes Theorem (mesh), Computational Biology (mesh), Phylogeny (mesh), Algorithms (mesh), Software (mesh), Ebolavirus (mesh), COVID-19 (mesh), SARS-CoV-2 (mesh), Software (mesh), Phylogeny (mesh), SARS-CoV-2 (mesh), Bayes Theorem (mesh), Ebolavirus (mesh), Algorithms (mesh), Humans (mesh), Computational Biology (mesh), COVID-19 (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 46 Information and computing sciences (for-2020), 49 Mathematical sciences (for-2020)
File Description: application/pdf