Identifying business activity-travel patterns based on GPS data

Συγγραφείς: liu, Feng ^{a, ⁎}, Gao, Ziyou ^b, Janssens, Davy ^a, Jia, Bin ^b, Wets, Geert ^a, Yang, Yang ^c

Πηγή: In Transportation Research Part C July 2021 128

Using an integrative machine learning approach utilising homology modelling to clinically interpret genetic variants: CACNA1F as an exemplar: CACNA1F as an exemplar

Συγγραφείς: Simon C. Lovell, Panagiotis I. Sergouniotis, Rachel L. Taylor, Graeme C.M. Black, Mitra Kabir, Nicholas Lench, Simon C Ramsden, Stephanie Barton, Shalaw R. Sallah, Jamie M Ellingford, Amro Safadi

Πηγή: Eur J Hum Genet
Sallah, S R, Sergouniotis, P I, Barton, S, Ramsden, S, Taylor, R L, Safadi, A, Kabir, M, Ellingford, J M, Lench, N, Lovell, S C & Black, G C M 2020, 'Using an integrative machine learning approach utilising homology modelling to clinically interpret genetic variants : CACNA1F as an exemplar', European Journal of Human Genetics, vol. 28, no. 9, pp. 1274-1282. https://doi.org/10.1038/s41431-020-0623-y

Θεματικοί όροι: 0301 basic medicine, 0303 health sciences, Calcium Channels, L-Type, L-Type/chemistry, Protein, Calcium Channels, L-Type/chemistry, Sequence Alignment/methods, Sequence Analysis, DNA, Article, DNA/methods, Machine Learning, 03 medical and health sciences, Sequence Analysis, DNA/methods, Structural Homology, Protein, Mutation, Animals, Humans, Calcium Channels, Genetic Testing, Sequence Analysis, Sequence Alignment, Genetic Testing/methods, Structural Homology

Σύνδεσμος πρόσβασης: https://www.nature.com/articles/s41431-020-0623-y.pdf
https://pubmed.ncbi.nlm.nih.gov/32313206
https://research.manchester.ac.uk/en/publications/f87a43f7-3c53-4a5b-a60d-85b2d0fb18ce
https://doi.org/10.1038/s41431-020-0623-y
https://www.nature.com/articles/s41431-020-0623-y.pdf
https://pubmed.ncbi.nlm.nih.gov/32313206/
https://www.nature.com/articles/s41431-020-0623-y
https://www.research.manchester.ac.uk/portal/en/publications/using-an-integrative-machine-learning-approach-utilising-homology-modelling-to-clinically-interpret-genetic-variants-cacna1f-as-an-exemplar(f87a43f7-3c53-4a5b-a60d-85b2d0fb18ce).html
https://europepmc.org/article/PMC/PMC7608274
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7608274

Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics.

Συγγραφείς: Collyn, F., Guy, L., Marceau, M., Simonet, M., Roten, C.A.

Θεματικοί όροι: Chromosome Mapping/methods, Evolution, Molecular, Gene Transfer, Horizontal/genetics, Genome, Bacterial, Genomic Islands/genetics, Nucleotides/genetics, Phylogeny, Sequence Alignment/methods, Sequence Analysis, DNA/methods, Virulence Factors/genetics, Yersinia/genetics

Περιγραφή αρχείου: application/pdf

Relation: Bioinformatics; 1367-4803[print], 1367-4803[linking]; https://iris.unil.ch/handle/iris/49399; serval:BIB_4CBE419539E7; 000236997600006

Διαθεσιμότητα: https://iris.unil.ch/handle/iris/49399
https://doi.org/10.1093/bioinformatics/bti793

Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.

Συγγραφείς: Poirot, O., O'Toole, E., Notredame, C.

Θεματικοί όροι: Consensus Sequence, Internet, Phylogeny, Sequence Alignment/methods, Sequence Analysis, DNA/methods, Protein/methods, RNA/methods, Software

Relation: Nucleic Acids Research; 1362-4962[electronic]; https://iris.unil.ch/handle/iris/128434; serval:BIB_27597; 000183832900046

Διαθεσιμότητα: https://iris.unil.ch/handle/iris/128434
https://doi.org/10.1093/nar/gkg522

Zoledronic Acid Induces Site-Specific Structural Changes and Decreases Vascular Area in the Alveolar Bone

Συγγραφείς: Silveira Soares, Mariana Quirino, Van Dessel, Jeroen, Jacobs, Reinhilde, da Silva Santos, Paulo Sergio, Cestari, Tania Mary, Garlet, Gustavo Pompermaier, Hungaro Duarte, Marco Antonio, Nozu Imada, Thais Sumie, Lambrichts, Ivo, Fischer Rubira-Bullen, Izabel Regina

Πηγή: Journal of Oral and Maxillofacial Surgery. 76:1893-1901

Θεματικοί όροι: Male, 0301 basic medicine, MICRODAMAGE ACCUMULATION, 1105 Dentistry, OSTEOPOROSIS, MICRO-CT, THERAPY, Zoledronic Acid, 03 medical and health sciences, Imaging, Three-Dimensional, 0302 clinical medicine, 3203 Dentistry, Bone Density, Dentistry, Oral Surgery & Medicine, RAT MODEL, Alveolar Process, Animals, Activity-based model, validation, sequence alignment methods, classification methods, process models, ALBATROSS, Rats, Wistar, ALENDRONATE, Science & Technology, TRABECULAR BONE, HISTOMORPHOMETRY, X-Ray Microtomography, Rats, 3. Good health, JAW, Dentistry, BIOMECHANICAL PROPERTIES, RISK-FACTORS, TURNOVER, Bisphosphonate-Associated Osteonecrosis of the Jaw, BISPHOSPHONATE-RELATED OSTEONECROSIS, Life Sciences & Biomedicine, DOG RIB, MICROARCHITECTURE

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: http://www.joms.org/article/S0278239118302209/pdf
https://pubmed.ncbi.nlm.nih.gov/29626448
https://www.sciencedirect.com/science/article/pii/S0278239118302209
https://europepmc.org/article/MED/29626448
https://pubmed.ncbi.nlm.nih.gov/29626448/
https://www.ncbi.nlm.nih.gov/pubmed/29626448
http://hdl.handle.net/1942/28498

Evolution of Protein Quaternary Structure in Response to Selective Pressure for Increased Thermostability

Συγγραφείς: Fraser, Nicholas J., Liu, Jian-Wei, Mabbitt, Peter D., Correy, Galen J., Coppin, Chris W., Lethier, Mathilde, Perugini, Matthew A., Murphy, James M., Oakeshott, John G., Weik, Martin, Jackson, Colin J.

Πηγή: Journal of Molecular Biology. 428:2359-2371

Θεματικοί όροι: 0301 basic medicine, Protein Structure, 0303 health sciences, Sheep, Mutation/genetics, Sequence Alignment/methods, Australia, Proteins, Protein Multimerization/genetics, Biological Evolution, Quaternary, 03 medical and health sciences, Proteins/genetics, Mutation, Sheep/genetics, Animals, Amino Acid Sequence, Protein Multimerization, Protein Structure, Quaternary, Sequence Alignment

Σύνδεσμος πρόσβασης: http://manuscript.elsevier.com/S002228361600200X/pdf/S002228361600200X.pdf
https://pubmed.ncbi.nlm.nih.gov/27016206
http://www.sciencedirect.com/science/article/pii/S002228361600200X
https://europepmc.org/abstract/MED/27016206
https://www.ncbi.nlm.nih.gov/pubmed/27016206
https://discovery.dundee.ac.uk/en/publications/evolution-of-protein-quaternary-structure-in-response-to-selectiv
https://pubmed.ncbi.nlm.nih.gov/27016206/
https://www.rcsb.org/structure/5ikx

Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide–Rich Environments

Συγγραφείς: Kelley, Joanna L, Arias-Rodriguez, Lenin, Patacsil Martin, Dorrelyn, Yee, Muh-Ching, Bustamante, Carlos D, Tobler, Michael

Πηγή: Mol Biol Evol
Molecular Biology and Evolution, vol 33, iss 6

Θεματικοί όροι: ecological physiology, Acclimatization, Evolutionary biology, extreme environments, Hydrogen Sulfide - metabolism, Hydrogen Sulfide, Physiological - genetics, Genome, H2S, Biological Sciences, Sequence Alignment - methods, Adaptation, Physiological, Biological Evolution, Sequence Analysis, Biotechnology, Gene Flow, Evolution, Physiological, Population, RNA-sequencing, Poecilia - physiology, Environment, RNA - methods, Physiological - physiology, Evolution, Molecular, Genetic, evolution, Acclimatization - physiology, Genetics, Animals, 14. Life underwater, Adaptation, Selection, Genetic, Population - methods, Selection, Discoveries, Ecosystem, Acclimatization - genetics, Evolutionary Biology, Poecilia, Sequence Analysis, RNA, Human Genome, Molecular, Poecilia - genetics, Poecilia mexicana, Genetics, Population, 13. Climate action, Biochemistry and cell biology, gene expression, Poecilia - metabolism, RNA, Biochemistry and Cell Biology, Transcriptome, Sequence Alignment

Περιγραφή αρχείου: application/pdf; pdf

Σύνδεσμος πρόσβασης: https://academic.oup.com/mbe/article-pdf/33/6/1419/17471144/msw020.pdf
https://pubmed.ncbi.nlm.nih.gov/26861137
http://europepmc.org/abstract/MED/26861137
https://pubmed.ncbi.nlm.nih.gov/26861137/
https://paperity.org/p/76052555/mechanisms-underlying-adaptation-to-life-in-hydrogen-sulfide-rich-environments
https://academic.oup.com/mbe/article/33/6/1419/2579358
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4868117/
https://escholarship.org/content/qt9q21807t/qt9q21807t.pdf
https://escholarship.org/uc/item/9q21807t

An Impact of the User and Time Parameters to Sequence Alignment Methods for Process Mining

Συγγραφείς: Štolfa, Jakub^Aff17, Štolfa, Svatopluk^Aff17, Slaninová, Kateřina^{Aff17, Aff18}, Martinovič, Jan^{Aff17, Aff18}, Snášel, Václav^{Aff17, Aff18}

Συνεισφορές: Hutchison, David, Series editor^Aff1, Kanade, Takeo, Series editor^Aff2, Kittler, Josef, Series editor^Aff3, Kleinberg, Jon M., Series editor^Aff4, Kobsa, Alfred, Series editor^Aff5, Mattern, Friedemann, Series editor^Aff6, Mitchell, John C., Series editor^Aff7, Naor, Moni, Series editor^Aff8, Nierstrasz, Oscar, Series editor^Aff9, Pandu Rangan, C., Series editor^Aff10, Steffen, Bernhard, Series editor^Aff11, Terzopoulos, Demetri, Series editor^Aff12, Tygar, Doug, Series editor^Aff13, Weikum, Gerhard, Series editor^Aff14, Saeed, Khalid, editor^Aff15, Snášel, Václav, editor^Aff16

Πηγή: Computer Information Systems and Industrial Management : 13th IFIP TC8 International Conference, CISIM 2014, Ho Chi Minh City, Vietnam, November 5-7, 2014. Proceedings. 8838:580-591

Characterizing activity sequences using profile Hidden Markov Models

Συγγραφείς: Liu, Feng ^{a, ⁎}, Janssens, Davy ^a, Cui, JianXun ^b, Wets, Geert ^a, Cools, Mario ^c

Πηγή: In Expert Systems With Applications 1 August 2015 42(13):5705-5722

MANTIS: a phylogenetic framework for multi-species genome comparisons

Συγγραφείς: Tzika, Athanasia, Helaers, Raphaël, Van de peer, Yves, Milinkovitch, Michel

Συνεισφορές: UCL - Autre

Πηγή: Bioinformatics (Oxford, England), Vol. 24, no. 2, p. 151-157 (2008)
BIOINFORMATICS

Θεματικοί όροι: SELECTION, 0301 basic medicine, Chromosome Mapping -- methods, Biochimie, Molecular Sequence Data, Informatique appliquée logiciel, comparative genomics, Chromosome Mapping - methods, ANNOTATION, Databases, User-Computer Interface, 03 medical and health sciences, Genetic, Informatique mathématique, Databases, Genetic, Computer Graphics, PRESERVATION, Statistique mathématique, ancestral genomes, SUBFUNCTIONALIZATION, Phylogeny, NEOFUNCTIONALIZATION, 0303 health sciences, multi-species comparisons, Base Sequence, Sequence Analysis, DNA - methods, DNA -- methods, Biologie moléculaire, Biology and Life Sciences, Chromosome Mapping, phylogenomics, Probabilités, Sequence Analysis, DNA, Sequence Alignment - methods, EVOLUTION, Sequence Alignment -- methods, DUPLICATE GENES, Database Management Systems, INFERENCE, Sequence Analysis, Sequence Alignment, SYSTEM, Software

Περιγραφή αρχείου: application/pdf; 2 full-text file(s): application/pdf

Σύνδεσμος πρόσβασης: https://academic.oup.com/bioinformatics/article-pdf/24/2/151/16883181/btm567.pdf
https://pubmed.ncbi.nlm.nih.gov/18025004
https://researchportal.unamur.be/en/publications/370a6a85-a67a-4eb2-9494-eb16a13c04ba
https://hdl.handle.net/2078/71411
http://hdl.handle.net/1854/LU-417304
http://doi.org/10.1093/bioinformatics/btm567
https://biblio.ugent.be/publication/417304/file/3065650
https://biblio.ugent.be/publication/417304

Structural Alignment of RNA with Triple Helix Structure

Συγγραφείς: Yiu, SM, Wong, TKF

Πηγή: Journal of Computational Biology. 19:365-378

Θεματικοί όροι: Models, Molecular, 0301 basic medicine, RNA, Untranslated, Base Sequence, Sequence Analysis, RNA, 0206 medical engineering, Untranslated - chemistry, 02 engineering and technology, RNA - methods, Sequence Alignment - methods, 03 medical and health sciences, RNA, Untranslated - chemistry, RNA, Nucleic Acid Conformation, Sequence Analysis, Sequence Alignment, Sequence Analysis, RNA - methods, Algorithms

Σύνδεσμος πρόσβασης: http://hub.hku.hk/bitstream/10722/165843/1/Content.pdf
https://pubmed.ncbi.nlm.nih.gov/22468707
http://www.liebertpub.com/doi/10.1089/cmb.2010.0052
https://pubmed.ncbi.nlm.nih.gov/22468707/
https://dblp.uni-trier.de/db/journals/jcb/jcb19.html#WongY12
https://core.ac.uk/display/37987956
http://hub.hku.hk/bitstream/10722/165843/1/Content.pdf
http://hub.hku.hk/handle/10722/165843
http://hdl.handle.net/10722/165843

Evaluation of DNA Mixtures from Database Search

Συγγραφείς: Fung, WK, Chung, YK, Hu, YQ

Πηγή: Chung, Y K, Hu, Y & Fung, W-K 2010, 'Evaluation of DNA Mixtures from Database Search', Biometrics, vol. 66, no. 1, pp. 233-238. https://doi.org/10.1111/j.1541-0420.2009.01271.x

Θεματικοί όροι: Forensic Genetics, likelihood ratio, Database search, Molecular Sequence Data, Information Storage and Retrieval, Sequence Analysis, Dna - Methods, database search, Databases, 03 medical and health sciences, 0302 clinical medicine, Genetic, Information Storage And Retrieval - Methods, Databases, Genetic, Mixture, Dna - Genetics, Humans, Dna - Methods, Forensic Genetics - Methods, Base Sequence, DNA, Sequence Analysis, DNA, Likelihood ratio, mixture, Sequence Alignment - Methods, Database Management Systems, Sequence Analysis, Sequence Alignment

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/19459834
https://research.manchester.ac.uk/en/publications/11ce21b8-76b4-48db-b025-50d03555ac8d
https://doi.org/10.1111/j.1541-0420.2009.01271.x
https://www.ncbi.nlm.nih.gov/pubmed/19459834
http://hub.hku.hk/handle/10722/172470
https://EconPapers.repec.org/RePEc:bla:biomet:v:66:y:2010:i:1:p:233-238
https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=201002275867985702
https://onlinelibrary.wiley.com/doi/10.1111/j.1541-0420.2009.01271.x
http://hdl.handle.net/10722/172470

Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

Συγγραφείς: Lu, David V, Brown, Randall H, Arumugam, Manimozhiyan, Brent, Michael R

Πηγή: Bioinformatics. 25:1587-1593

Θεματικοί όροι: 0301 basic medicine, DNA, Complementary, Genomics: methods, Base Sequence, Complementary: chemistry, 0206 medical engineering, DNA, Genomics, 02 engineering and technology, Markov Chains, Rats, Mice, 03 medical and health sciences, Complementary, Animals, Humans, Sequence Alignment: methods, Sequence Alignment

Σύνδεσμος πρόσβασης: https://academic.oup.com/bioinformatics/article-pdf/25/13/1587/16887648/btp273.pdf
https://pubmed.ncbi.nlm.nih.gov/19414532

A Highly Conserved Motif within the NH2-terminal Coiled-coil Domain of Angiopoietin-like Protein 4 Confers Its Inhibitory Effects on Lipoprotein Lipase by Disrupting the Enzyme Dimerization

Συγγραφείς: Wang, Y, Xu, A, Yau, MH, Zhang, J, Wu, D, Lam, KSL

Πηγή: Journal of Biological Chemistry. 284:11942-11952

Θεματικοί όροι: 0301 basic medicine, Protein Structure, Amino Acid Motifs, Tertiary - Physiology, Peptide Mapping, Lipoprotein Lipase - Antagonists & Inhibitors - Genetics - Metabolism, Enzyme Inhibitors - Metabolism, Mice, 03 medical and health sciences, 3T3-L1 Cells, Angiopoietin-Like Protein 4, Animals, Humans, Amino Acid Motifs - Physiology, Enzyme Inhibitors, Angiopoietin-Like Protein 3, 0303 health sciences, Angiopoietins - Genetics - Metabolism, Protein Structure, Tertiary - Physiology, Protein Structure, Tertiary, Lipoprotein Lipase, Angiopoietin-like Proteins, Amino Acid Substitution, Sequence Alignment - Methods, Mutation, Peptide Mapping - Methods, Angiopoietins, Dimerization, Sequence Alignment

Σύνδεσμος πρόσβασης: http://www.jbc.org/content/284/18/11942.full.pdf
https://pubmed.ncbi.nlm.nih.gov/19246456
https://www.sciencedirect.com/science/article/pii/S0021925820583543
https://europepmc.org/article/MED/19246456
http://www.jbc.org/content/284/18/11942.abstract
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673263/
https://hub.hku.hk/handle/10722/163249
http://intl.jbc.org/cgi/reprint/284/18/11942.pdf
http://hdl.handle.net/10722/163249

R-Coffee: a web server for accurately aligning noncoding RNA sequences

Συγγραφείς: Moretti, Sébastien, Wilm, Andreas, Higgins, Desmond G., Xenarios, Ioannis, Notredame, Cédric

Πηγή: Nucleic Acids Res
Nucleic Acids Research, vol. 36, no. Web Server issue, pp. W10-W13

Θεματικοί όροι: 0301 basic medicine, Internet, 0303 health sciences, 03 medical and health sciences, RNA, Untranslated, Sequence Analysis, RNA, Algorithms, Nucleic Acid Conformation, RNA, Untranslated/chemistry, Sequence Alignment/methods, Software, Articles, Sequence Alignment

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://academic.oup.com/nar/article-pdf/36/suppl_2/W10/7627355/gkn278.pdf
https://pubmed.ncbi.nlm.nih.gov/18483080
https://serval.unil.ch/resource/serval:BIB_D39CC5C415A8.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_D39CC5C415A80
https://serval.unil.ch/notice/serval:BIB_D39CC5C415A8
http://doc.rero.ch/record/294141/files/gkn278.pdf

Compressed indexing and local alignment of DNA

Συγγραφείς: Lam, T.W., Sung, W.K., Tam, S.L., Wong, C.K., Yiu, S.M.

Συνεισφορές: COMPUTER SCIENCE

Πηγή: Bioinformatics. 24:791-797

Θεματικοί όροι: DNA - methods, 0301 basic medicine, Genome, Base Sequence, Genome, Human, Sequence Analysis, DNA - methods, Molecular Sequence Data, 0206 medical engineering, DNA - genetics, Data Compression - methods, Chromosome Mapping, Human - genetics, DNA, Sequence Analysis, DNA, 02 engineering and technology, Chromosome Mapping - methods, Sequence Alignment - methods, Data Compression, 03 medical and health sciences, Humans, Sequence Analysis, Genome, Human - genetics, Sequence Alignment, Algorithms

Σύνδεσμος πρόσβασης: https://academic.oup.com/bioinformatics/article-pdf/24/6/791/16886605/btn032.pdf
https://pubmed.ncbi.nlm.nih.gov/18227115
http://hdl.handle.net/10722/89140

Remote homology detection of integral membrane proteins using conserved sequence features

Συγγραφείς: Bernsel, Andreas, Viklund, Håkan, Elofsson, Arne

Πηγή: Proteins. 71(3):1387-1399

Θεματικοί όροι: Conserved Sequence, Databases, Protein, Hydrophobicity, Markov Chains, Membrane Proteins/*chemistry, Sensitivity and Specificity, Sequence Alignment/*methods, Sequence Analysis, Protein/methods, Sequence Homology, Amino Acid

Περιγραφή αρχείου: print

Σύνδεσμος πρόσβασης: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-14855

Finding motifs from all sequences with and without binding sites

Συγγραφείς: Chin, FYL, Leung, HCM

Πηγή: Bioinformatics. 22:2217-2223

Θεματικοί όροι: 0301 basic medicine, Genetic - genetics, Amino Acid Motifs, Molecular Sequence Data, 0206 medical engineering, 02 engineering and technology, Promoter Regions, 03 medical and health sciences, Models, Promoter Regions, Genetic, DNA - methods, Binding Sites, Models, Statistical, Base Sequence, Transcription Factors - chemistry - genetics - metabolism, Sequence Analysis, DNA - methods, Sequence Analysis, DNA, Statistical, Sequence Alignment - methods, Promoter Regions, Genetic - genetics, Sequence Analysis, Sequence Alignment, Algorithms, Protein Binding, Transcription Factors

Σύνδεσμος πρόσβασης: https://academic.oup.com/bioinformatics/article-pdf/22/18/2217/901881/btl371.pdf
https://pubmed.ncbi.nlm.nih.gov/16870937
http://hdl.handle.net/10722/88894

Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.

Συγγραφείς: Lassmann, Timo, Sonnhammer, Erik L L

Πηγή: Nucleic Acids Res. 34(Web Server issue):W596-9

Θεματικοί όροι: Internet, Quality Control, Sequence Alignment/*methods/standards, Sequence Analysis, Protein, Software, User-Computer Interface

Περιγραφή αρχείου: print

Σύνδεσμος πρόσβασης: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-21056

Prediction of function divergence in protein families using the substitution rate variation parameter alpha.

Συγγραφείς: Abhiman, Saraswathi, Daub, Carsten O, Sonnhammer, Erik L L

Πηγή: Mol Biol Evol. 23(7):1406-13

Θεματικοί όροι: Algorithms, Amino Acid Substitution/*genetics, Computational Biology/*methods, Conserved Sequence/genetics, Evolution, Molecular, Phylogeny, Proteins/*genetics/physiology, Reproducibility of Results, Sequence Alignment/methods, Variation (Genetics)/*genetics

Περιγραφή αρχείου: print

Σύνδεσμος πρόσβασης: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-21057