Comparison of three bioinformatics pipelines for DNA/RNA data processing

Συγγραφείς: Lijun, Jiang, Yang, Wenxian, Yu, Rongshan, Wu, Shiqian, Lekshmy, Anisha Anil

Πηγή: 2017 12th IEEE Conference on Industrial Electronics and Applications (ICIEA) Industrial Electronics and Applications (ICIEA), 2017 12th IEEE Conference on. :80-83 Jun, 2017

Relation: 2017 12th IEEE Conference on Industrial Electronics and Applications (ICIEA)

A kind of magic

Συγγραφείς: Hansford, Dave

Πηγή: New Zealand geographic, Mar/Apr 2024; n.186:p.94-107

Low dimensional structure in single cell data

Συγγραφείς: Kunes, Russell Allen Zhang

Θεματικοί όροι: Statistics, Biostatistics, RNA--Data processing, Gene expression--Data processing, Latent variables

Διαθεσιμότητα: https://doi.org/10.7916/96ay-zy30

Enhanced evaluation of RNA expression in esophageal cancer tissues: combining microarray and RNA-sequence approaches

Συγγραφείς: Otto, Nicola Miriam Elizabeth

Συνεισφορές: Tromp, Gerardus, Simba, Hannah, Stellenbosch University. Faculty of Science. Centre of Bioinformatics and Computational Biology.

Θεματικοί όροι: Esophageal cancer, Esophageal squamous cell carcinoma -- Pathophysiology, Barrett's esophagus -- Molecular aspects, Gene expression -- Technique, RNA -- Data processing, DNA microarrays -- Data processing, UCTD

Περιγραφή αρχείου: xxiii, 78 pages : illustrations, maps; application/pdf

Relation: https://scholar.sun.ac.za/handle/10019.1/135967

Διαθεσιμότητα: https://scholar.sun.ac.za/handle/10019.1/135967

Workflows for identifying differentially expressed small RNAs and detection of low copy repeats in human

Συγγραφείς: Liu, Xuan, 刘璇

Thesis Advisors: Yiu, SM

Θεματικοί όροι: Non-coding RNA - Data processing

Relation: HKU Theses Online (HKUTO)

Διαθεσιμότητα: http://hdl.handle.net/10722/208038

One-class SVM and supervised machine learning models for uncovering associations of non-coding RNA with diseases

Συγγραφείς: Gutiérrez Cárdenas, Juan Manuel

Συνεισφορές: Wang, Zenghui

Θεματικοί όροι: mRNAs, lncRNAs, K-mers, Sequence features, Breast neoplasms, Breast cancer, SARS-CoV-2, One-class models, Supervised learning, Unsupervised learning, 615.8950285631, Non-coding RNA -- Data processing, Breast -- Cancer -- Gene therapy -- Data processing, COVID-19 (Disease) -- Gene therapy -- Data processing, Support vector machines, Machine learning

Περιγραφή αρχείου: 1 online resource (xiii, 104 leaves) : illustrations (chiefly color), color graphs; application/pdf

Relation: https://hdl.handle.net/10500/28539

Διαθεσιμότητα: https://hdl.handle.net/10500/28539

Non-coding RNA identification along genome

Συγγραφείς: Wong, king-fung., 黃景峰.

Thesis Advisors: Yiu, SM, Lam, TW

Θεματικοί όροι: Non-coding RNA - Data processing., Genomes - Data processing., Stochastic processes., Computer algorithms.

Relation: HKU Theses Online (HKUTO)

Reconstructing gene regulatory networks with new datasets. ; CUHK electronic theses & dissertations collection

Συνεισφορές: Yip, Kit Sang Danny., Chinese University of Hong Kong Graduate School. Division of Computer Science and Engineering.

Θεματικοί όροι: RNA--Data processing, Proteins--Analysis--Data processing

Περιγραφή αρχείου: electronic resource; remote; 1 online resource (xi, 126, [1] leaves) : ill. (some col.)

Relation: cuhk:328229; http://library.cuhk.edu.hk/record=b5549309

Διαθεσιμότητα: http://library.cuhk.edu.hk/record=b5549309
https://repository.lib.cuhk.edu.hk/en/item/cuhk-328229

Database construction and computational analysis of bacterial small regulatory RNAs. ; CUHK electronic theses & dissertations collection

Συνεισφορές: Li, Lei, Chinese University of Hong Kong Graduate School. Division of Life Sciences.

Θεματικοί όροι: Bacterial genetics--Data processing, RNA--Data processing, Genetic regulation

Περιγραφή αρχείου: electronic resource; remote; 1 online resource (x, 91 leaves) : ill. (some col.)

Relation: cuhk:327734; http://library.cuhk.edu.hk/record=b5884382

Διαθεσιμότητα: http://library.cuhk.edu.hk/record=b5884382
https://repository.lib.cuhk.edu.hk/en/item/cuhk-327734

Filtering of false positive microRNA candidates by a clustering-based approach

Συγγραφείς: Leung, Wing-sze, 梁穎思

Thesis Advisors: Cheung, DWL, Yiu, SM, Lin, MC

Θεματικοί όροι: Small interfering RNA - Data processing., Bioinformatics.

Relation: HKU Theses Online (HKUTO)

Comparison and improvement of siRNA design tools

Συγγραφείς: Mui, Yuen-chi., 梅宛芝.

Thesis Advisors: Yiu, SM, Lam, TW

Θεματικοί όροι: Small interfering RNA - Data processing., Computer algorithms.

Relation: HKU Theses Online (HKUTO)

Enabling scalable data analysis for large computational structural biology datasets on large distributed memory systems supported by the MapReduce paradigm

Συγγραφείς: Zhang, Boyu

Θεματικοί όροι: Protein folding -- Data processing, Ligands -- Data processing, MapReduce (Computer file), RNA -- Data processing, Data mining

Περιγραφή αρχείου: application/pdf

Non-coding RNA identification along genome

Συγγραφείς: Wong, king-fung.

Συνεισφορές: Lam, TW, Yiu, SM

Θεματικοί όροι: Genomes - Data processing, Stochastic processes, 4. Education, Non-coding RNA - Data processing, Computer algorithms

Filtering of false positive microRNA candidates by a clustering-based approach

Συγγραφείς: Leung, Wing-sze

Συνεισφορές: Yiu, SM, Lin, MC, Cheung, DWL

Θεματικοί όροι: Bioinformatics, Small interfering RNA - Data processing

Σύνδεσμος πρόσβασης: http://hub.hku.hk/bitstream/10722/61686/1/Content.pdf

Comparison and improvement of siRNA design tools

Συγγραφείς: Mui, Yuen-chi.

Συνεισφορές: Yiu, SM, Lam, TW

Θεματικοί όροι: Computer algorithms, Small interfering RNA - Data processing

Integrated RNA-seq and small RNA-seq profiling reveals tissue-associated transcriptional programs and candidate miRNA–mRNA relationships across tea floral tissues.

Συγγραφείς: Xing, Feng, Sun, Feipeng, Xie, Qingying, Li, Tianyu, Yang, Jinyan, Heng, Shuangping, Xu, Ling, Zhang, Wei, Mao, Guangzhi

Πηγή: Frontiers in Plant Science; 2026, p1-17, 17p

Θεματικοί όροι: RNA sequencing, Gene expression, RNA regulation, Flower development, Camellias

IFIT1⁺ Tumor-Associated Macrophages Suppress Cancer Stemness and Enhance Chemosensitivity via the TNFSF10-TNFRSF10B Axis in Epithelial Ovarian Cancer.

Συγγραφείς: Liu, Rui, Fang, Yilin, Zheng, Ruxi, Lin, Liya, Huang, Da, Zhai, Lingyun, He, Qionghua, Zhang, Zhigang, Zhou, Jianwei, Zhang, Xiaoming

Πηγή: Frontiers in Bioscience - Landmark Edition; Aug2026, Vol. 31 Issue 8, p1-18, 18p

Pan‐cancer atlas of cellular architecture reveals a nearest‐neighbour distance‐associated biomechanical‐immune axis involving CD4+ memory T cells.

Συγγραφείς: Huang, Linglong, Östman, Arne, Sun, Yunfan

Πηγή: Clinical & Translational Medicine; Jul2026, Vol. 16 Issue 7, p1-27, 27p

Θεματικοί όροι: Mechanotransduction (Cytology), Tumor-infiltrating immune cells, Tumor microenvironment, RNA sequencing, CD4 antigen, Cancer prognosis, Cell aggregation

Gastrointestinal germinal center B cell depletion and reduction in IgA⁺ plasma cells in HIV-1 infection.

Συγγραφείς: Cossarini, Francesca, Shang, Joan, Krek, Azra, Al-Taie, Zainab, Hou, Ruixue, Canales-Herrerias, Pablo, Tokuyama, Minami, Tankelevich, Michael, Tillowitz, Adam, Jha, Divya, Livanos, Alexandra E., Leyre, Louise, Uzzan, Mathieu, Martinez-Delgado, Gustavo, Taylor, Matthew D., Sharma, Keshav, Bourgonje, Arno R., Cruz, Michael, Ioannou, Giorgio, Dawson, Travis

Πηγή: Science Immunology; 2024, Vol. 9 Issue 100, p1-19, 19p

Θεματικοί όροι: Follicular dendritic cells, Type I interferons, Plasma cells, B cells, Gastrointestinal system

TUSCAN: Tumor segmentation and classification analysis in spatial transcriptomics.

Συγγραφείς: Zang, Chenxuan, Guo, Charles C., Wang, Yaohong, Wei, Peng, Li, Ziyi

Πηγή: PLoS Computational Biology; 3/17/2026, Vol. 22 Issue 3, p1-18, 18p

Θεματικοί όροι: DNA copy number variations, Tumor genetics, RNA sequencing, Image segmentation, Gene expression, Cell physiology, Tumor microenvironment, Machine learning