Syndromic approaches for sexually transmitted infections: added value of molecular diagnosis

Authors: Opota, O., Greub, G.

Source: Curr Opin HIV AIDS
Current opinion in HIV and AIDS, vol. 20, no. 3, pp. 303-309

Subject Terms: Molecular Diagnostic Techniques, MONKEYPOX AND EMERGING DISEASES: Edited by Gilbert Greub, Sexually Transmitted Diseases, Humans, Sexually Transmitted Diseases/diagnosis, Molecular Diagnostic Techniques/methods, Polymerase Chain Reaction/methods, PCR, sexually transmitted infection, syndromic diagnostics, Polymerase Chain Reaction

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/40172545
https://serval.unil.ch/resource/serval:BIB_F358DBB90C19.P001/REF.pdf
https://serval.unil.ch/notice/serval:BIB_F358DBB90C19
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_F358DBB90C193

Treatment‐Free Remission Outcomes in a BCR::ABL1 Digital PCR Selected Clinical Cohort of CML Patients: :ABL1 Digital PCR Selected Clinical Cohort of CML Patients

Authors: Kockerols, C., Valk, P. J. M., Hogenbirk, P., Geelen, I., Blijlevens, N. M. A., Janssen, J. J. W. M., Hoogendoorn, M., Kersting, S., Klein, S. K., Daenen, L. G. M., Donker, M., te Boekhorst, P. A. W., Jie, K. -S. G., Corsten, M., Cruijsen, M. J., Levenga, H., Smit, W. M., Levin, M. D., de Jongh, E., de Jonge, S., Vlot, A. J., Durian, M. F., Zwaginga, J. J., Mohlmann, M., Wustman, T. J., Blommers, R., Cornelissen, J. J., Westerweel, P. E., Bilgin, Y., Broers, A. E. C., Brouwer, R., Castelijn, D. A. R., de Graaf, A. N., Demandt, A. M. P., Droogendijk, J., de Weerdt, E. C., van Kampen, R., Libourel, E., Ludwig, I., Oosterveld, M., Oostvogels, R., Oudhoff, J. P., van Rhenen, A., Stevens, W., Swart-Heikens, J., te Raa, D., van der Klift, M., van Lammeren, D., van Rijn, R., van Rooijen, C., Verpoorte, I. P. G., Willemsen, D., Wouters, B. J., Ypma, P. F.

Source: Eur J Haematol
European Journal of Haematology, 114, 5, pp. 900-907

Subject Terms: Male, Adult, treatment-free remission, Leukemia, Protein Kinase Inhibitors/therapeutic use, Polymerase Chain Reaction/methods, Remission Induction, bcr-abl/genetics, Fusion Proteins, Middle Aged, BCR-ABL Positive/genetics, Young Adult, Treatment Outcome, chronic myeloid leukemia, Humans, BCR::ABL1 digital PCR, Original Article, Female, tyrosine kinase inhibitor treatment discontinuation, Chronic, Haematology - Radboud University Medical Center, Myelogenous, Aged

Access URL: https://pubmed.ncbi.nlm.nih.gov/39957332
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/319059
https://doi.org/10.1111/ejh.14368
https://pure.eur.nl/en/publications/44e720bf-72de-4f82-bda8-c448ba51be25
https://doi.org/10.1111/ejh.14368
https://repository.ubn.ru.nl//bitstream/handle/2066/319059/319059.pdf
https://hdl.handle.net/2066/319059

Development and field evaluation in African and Asian countries of an hepatitis B virus PCR on open polyvalent platforms to determine treatment eligibility: results from the 'Agence Nationale de Recherche sur le Sida et les hépatites' 12327 study

Authors: Kania, Dramane, Nouhin, Janin, Bollore, Karine, Njouom, Richard, Toni, Thomas d'Aquin, Maiga, Almoustapha Issiaka, Toure-Kane, Coumba, Ngo-Giang-Huong, Nicole, Dagnra, Anoumou, Chuong Le, Duy Hoang, Lunel-Fabiani, Françoise, Castera-Guy, Joany, Rubbo, Pierre-Alain, Pisoni, Amandine, Plantier, Jean-Christophe, Tuaillon, Edouard

Contributors: Centre Muraz Bobo-Dioulasso, Burkina Faso, Unité de Virologie / Virology Unit Phnom Penh, Institut Pasteur du Cambodge, Pasteur Network (Réseau International des Instituts Pasteur)-Pasteur Network (Réseau International des Instituts Pasteur), Pathogenesis and Control of Chronic and Emerging Infections (PCCEI), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université des Antilles (UA)-Etablissement français du don du sang Montpellier -Université de Montpellier (UM), Centre Pasteur du Cameroun, Pasteur Network (Réseau International des Instituts Pasteur), Centre de recherche et de Diagnostic sur le Sida Abidjan, Côte d'Ivoire (CeDreS), Centre Hospitalier Universitaire de Treichville Abidjan, Côte d'Ivoire (CHU de Treichville), Université des Sciences, des Techniques et des Technologies de Bamako (USTTB), CHU Aristide Le Dantec, Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD Occitanie )-Université de Montpellier (UM), Chiang Mai University (CMU), Université de Lomé Togo, Institut Pasteur d'Ho Chi Minh Ville, Hémodynamique, Interaction Fibrose et Invasivité tumorales Hépatiques (HIFIH), Université d'Angers (UA), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM), LUNAM Université Nantes Angers Le Mans, Omunis SAS, Centre Hospitalier Régional Universitaire Montpellier (CHRU Montpellier), Hôpital Charles Nicolle Rouen, CHU Rouen, Normandie Université (NU)-Normandie Université (NU)

Source: Clinical Microbiology and Infection. 30:1067-1073

Subject Terms: Male, Adult, 0301 basic medicine, Hepatitis B virus, Asia, Viral* / genetics, [SDV]Life Sciences [q-bio], Genotypes, MESH: Africa, MESH: Viral Load / methods, Real-Time Polymerase Chain Reaction, Sensitivity and Specificity, Polymerase Chain Reaction, 03 medical and health sciences, MESH: Polymerase Chain Reaction / methods, [SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases, Humans, MESH: Real-Time Polymerase Chain Reaction / methods, MESH: Hepatitis B virus* / genetics, MESH: Molecular Diagnostic Techniques / methods, 0303 health sciences, MESH: Middle Aged, MESH: Hepatitis B virus* / virology, MESH: Humans, MESH: Asia, MESH: DNA, MESH: Adult, MESH: Hepatitis B virus* / diagnosis, Viral Load, Middle Aged, Hepatitis B, MESH: Hepatitis B virus* / isolation & purification, MESH: Male, MESH: Sensitivity and Specificity, 3. Good health, PCR, Molecular Diagnostic Techniques, DNA, Viral, Africa, [SDV.IMM]Life Sciences [q-bio]/Immunology, Female, MESH: Female, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology

Access URL: https://pubmed.ncbi.nlm.nih.gov/38735369

Clinical evaluation of a multiplex PCR-based test for joint infection: a prospective diagnostic accuracy study of forty-nine patients: a prospective diagnostic accuracy study of forty-nine patients

Authors: Jacob Lund-Andersen, Matilde L. H. Petersen, Krassimir Kostadinov, Lennart Friis-Hansen, Henrik Calum, Søren Overgaard

Source: Eur J Orthop Surg Traumatol
Lund-Andersen, J, Petersen, M L H, Kostadinov, K, Friis-Hansen, L, Calum, H & Overgaard, S 2024, ' Clinical evaluation of a multiplex PCR-based test for joint infection : a prospective diagnostic accuracy study of forty-nine patients ', European Journal of Orthopaedic Surgery and Traumatology, vol. 34, no. 8, pp. 4105-4111 . https://doi.org/10.1007/s00590-024-04114-2

Subject Terms: Male, Adult, Prosthesis-Related Infections, Multiplex Polymerase Chain Reaction/methods, Biopsy, Pathogen detection, Diagnostic accuracy, Sensitivity and Specificity, Joint infection, Prosthesis-Related Infections/diagnosis, Predictive Value of Tests, Synovial Fluid, 80 and over, Humans, Culture growth, Prospective Studies, Infectious/diagnosis, Aged, Aged, 80 and over, Arthritis, Infectious, Arthritis, Middle Aged, PCR, Synovial Fluid/microbiology, Original Article, Female, Multiplex Polymerase Chain Reaction

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39358640
https://curis.ku.dk/ws/files/411113457/s00590_024_04114_2.pdf
https://portal.findresearcher.sdu.dk/da/publications/ce787566-28eb-4a81-ad12-7571930a6278
https://doi.org/10.1007/s00590-024-04114-2

Polymerase Chain Reaction on Respiratory Tract Specimens of Immunocompromised Patients to Diagnose Pneumocystis Pneumonia: A Systematic Review and Meta-analysis

Authors: Lottie Brown, Riina Rautemaa-Richardson, Carlo Mengoli, Alexandre Alanio, Rosemary A Barnes, Stéphane Bretagne, Sharon C A Chen, Catherine Cordonnier, J Peter Donnelly, Werner J Heinz, Brian Jones, Lena Klingspor, Juergen Loeffler, Thomas R Rogers, Eleanor Rowbotham, P Lewis White, Mario Cruciani

Source: Clin Infect Dis
Brown, L, Richardson, R, Mengoli, C, Alanio, A, Barnes, R A, Bretagne, S, Chen, S C A, Cordonnier, C, Donnelly, J P, Heinz, W J, Jones, B, Klingspor, L, Loeffler, J, Rogers, T, Rowbotham, E, Lewis White, P & Cruciani, M 2024, 'Polymerase Chain Reaction on Respiratory Tract Specimens of Immunocompromised Patients to Diagnose Pneumocystis Pneumonia: A Systematic Review and Meta-analysis', Clinical infectious diseases, vol. 79, no. 1, pp. 161-168. https://doi.org/10.1093/cid/ciae239

Subject Terms: 0301 basic medicine, Pneumocystis carinii/genetics, Polymerase Chain Reaction/methods, polymerase chain reaction, Respiratory System, pneumocystis, HIV Infections, Sputum/microbiology, Real-Time Polymerase Chain Reaction/methods, Pneumocystis carinii, Real-Time Polymerase Chain Reaction, Sensitivity and Specificity, Polymerase Chain Reaction, Bronchoalveolar Lavage Fluid/microbiology, Immunocompromised Host, 03 medical and health sciences, 0302 clinical medicine, systematic review, Respiratory System/microbiology, Major Article, Humans, Pneumonia, Pneumocystis, Sputum, Pneumonia, Pneumonia, Pneumocystis/diagnosis, PCP, meta-analysis, HIV Infections/diagnosis, Bronchoalveolar Lavage Fluid, Pneumocystis/diagnosis

Access URL: https://pubmed.ncbi.nlm.nih.gov/38860786

BCR::ABL1 digital PCR for treatment‐free remission prediction in chronic myeloid leukemia patients: An individual participant data meta‐analysis: An individual participant data meta-analysis

Authors: Kockerols, Camille, Valk, Peter J M, Dulucq, Stéphanie, Nicolini, Franck-Emmanuel, Mahon, François-Xavier, Atallah, Ehab, Mauro, Michael J, Radich, Jerald P, Bernardi, Simona, Russo, Domenico, Farina, Mirko, Mori, Silvia, Gambacorti-Passerini, Carlo, Civettini, Ivan, Lu, Liu, Yeung, David, Branford, Susan, Colafigli, Gioia, Breccia, Massimo, Hogenbirk, Pauline, van Rosmalen, Joost, Cornelissen, Jan J, Westerweel, Peter E, Donker, M.L.

Source: American Journal of Hematology. 99:1632-1635

Subject Terms: Male, Leukemia, Polymerase Chain Reaction/methods, Leukemia, Myelogenous, Chronic, BCR-ABL Positive, BCR-ABL Positive/diagnosis, bcr-abl/genetics, Fusion Proteins, bcr-abl, Fusion Proteins, Humans, Female, Chronic, Polymerase Chain Reaction, Myelogenous

Access URL: https://pubmed.ncbi.nlm.nih.gov/38769689
https://pure.amsterdamumc.nl/en/publications/97012317-cdc7-48ab-a477-3ac9517806f8
https://doi.org/10.1002/ajh.27359
https://hdl.handle.net/11379/597745
https://doi.org/10.1002/ajh.27359
https://hdl.handle.net/11573/1721597
https://doi.org/10.1002/ajh.27359

The gray area of RQ-PCR-based measurable residual disease: subdividing the 'positive, below quantitative range' category: subdividing the “positive, below quantitative range” category

Authors: Kotrova, Michaela, Fronkova, Eva, Svaton, Michael, Drandi, Daniela, Schön, Felix, Hoogeveen, Patricia, Hancock, Jeremy, Skotnicova, Aneta, Schilhabel, Anke, Eckert, Cornelia, Clappier, Emmanuelle, Cazzaniga, Gianni, Schäfer, Beat W, van Dongen, Jacques J M, Ritgen, Matthias, Pott, Christiane, van der Velden, Vincent H J, Trka, Jan, Brüggemann, Monika

Contributors: University of Zurich, Brüggemann, Monika

Source: Leukemia
Leukemia 38(7), 1617-1620. (2024)

Subject Terms: measurable residual disease, Letter, Neoplasm, Residual, 2720 Hematology, 610 Medicine & health, Real-Time Polymerase Chain Reaction, 692/308/575, 45/77, 692/308/2056, Humans [MeSH], letter, 45/23, Neoplasm, Residual/diagnosis [MeSH], Neoplasm, Residual/genetics [MeSH], Real-Time Polymerase Chain Reaction/methods [MeSH], Real-time quantitative PCR, Humans, SDG 3 - Good Health and Well-being, 10036 Medical Clinic, 2730 Oncology, 1306 Cancer Research, T-cell receptor, immunoglobulin

File Description: application/pdf; ZORA_270348.pdf - application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38760480
https://pure.eur.nl/en/publications/42b9bc5f-6a62-437b-918d-f3bdccb38f25
https://doi.org/10.1038/s41375-024-02265-z
https://hdl.handle.net/20.500.14178/2583
https://repository.publisso.de/resource/frl:6503052
https://hdl.handle.net/2318/2037390
https://doi.org/10.1038/s41375-024-02265-z

Analysis of measurable residual disease by IG/TR gene rearrangements: quality assurance and updated EuroMRD guidelines: quality assurance and updated EuroMRD guidelines

Authors: van der Velden, Vincent, Dombrink, Isabel, Alten, Julia, Cazzaniga, Giovanni, Clappier, Emmanuelle, Drandi, Daniela, Eckert, Cornelia, Fronkova, Eva, Hancock, Jeremy, Kotrová, Michaela, Kraemer, Rebekka, Montonen, Mirkka, Pfeifer, Heike, Pott, Christiane, Raff, Thorsten, Trautmann, Heiko, Cavé, Hélène, Schafer, Beat, van Dongen, Jacques J.M., Trka, Jan, Brüggemann, Monika, EuroMRD Consortium, van der Velden, Vincent H. J., van Dongen, Jacques J. M.

Source: Leukemia

Subject Terms: Gene Rearrangement, Neoplasm, Residual, Genes, Immunoglobulin, Quality Assurance, Health Care, Precursor Cell Lymphoblastic Leukemia-Lymphoma, Real-Time Polymerase Chain Reaction, 16. Peace & justice, Genes, Immunoglobulin [MeSH], Precursor Cell Lymphoblastic Leukemia-Lymphoma/diagnosis [MeSH], Humans [MeSH], 692/700/139, Neoplasm, Residual/diagnosis [MeSH], Practice Guidelines as Topic/standards [MeSH], Real-Time Polymerase Chain Reaction/methods [MeSH], 692/700/139/1512, Article, Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics [MeSH], Quality Assurance, Health Care [MeSH], 45/77, Gene Rearrangement [MeSH], Neoplasm, Residual/genetics [MeSH], Real-Time Polymerase Chain Reaction/standards [MeSH], article, 3. Good health, SDG 3 - Good Health and Well-being, Practice Guidelines as Topic, Humans, minimal residual disease, IG/TR rearrangements, lymphoproliferative disorders

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38744919
https://pure.eur.nl/en/publications/62a82ac1-33d1-4b8a-85c8-a5378adaa017
https://doi.org/10.1038/s41375-024-02272-0
https://hdl.handle.net/10281/535869
https://doi.org/10.1038/s41375-024-02272-0
https://repository.publisso.de/resource/frl:6496193

Unveiling Genetic Markers for Milk Yield in Xinjiang Donkeys: A Genome-Wide Association Study and Kompetitive Allele-Specific PCR-Based Approach.

Authors: Fang, Chao, Farnir, Frédéric, Liu, Lingling, Xiao, Haixia

Source: International Journal of Molecular Sciences, 26 (7), 2961 (2025-03-25)

Subject Terms: GWAS, SNPs, Xinjiang donkey, candidate gene, milk, Genetic Markers, Animals, Polymorphism, Single Nucleotide, Female, Alleles, Polymerase Chain Reaction/methods, Equidae/genetics, Genome-Wide Association Study, Milk/metabolism, Lactation/genetics, Molecular Biology, Life sciences, Animal production & animal husbandry, Sciences du vivant, Productions animales & zootechnie

Relation: https://www.mdpi.com/1422-0067/26/7/2961/pdf; urn:issn:1661-6596; urn:issn:1422-0067; https://orbi.uliege.be/handle/2268/331239; info:hdl:2268/331239; info:pmid:40243566

Availability: https://orbi.uliege.be/handle/2268/331239
https://orbi.uliege.be/bitstream/2268/331239/1/ijms-26-02961.pdf
https://doi.org/10.3390/ijms26072961

Multiplex vs. singleplex assay for the simultaneous identification of the three components of avian malaria vector-borne disease by DNA metabarcoding.

Authors: Mas-Carrió, E., Schneider, J., Othenin-Girard, V., Pigeault, R., Taberlet, P., Christe, P., Glaizot, O., Fumagalli, L.

Source: PeerJ, vol. 13, pp. e19107

Subject Terms: Animals, DNA Barcoding, Taxonomic/methods, Multiplex Polymerase Chain Reaction/methods, Malaria, Avian/parasitology, Avian/diagnosis, Mosquito Vectors/genetics, Mosquito Vectors/parasitology, Blood meals, DNA metabarcoding, Host, Mosquito, Parasite, Plasmodium infection, Vector, Vector-borne disease

File Description: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/40124602; info:eu-repo/semantics/altIdentifier/eissn/2167-8359; info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_E0D45668FBE62; https://serval.unil.ch/notice/serval:BIB_E0D45668FBE6; https://serval.unil.ch/resource/serval:BIB_E0D45668FBE6.P001/REF.pdf

Availability: https://serval.unil.ch/notice/serval:BIB_E0D45668FBE6
https://doi.org/10.7717/peerj.19107
https://serval.unil.ch/resource/serval:BIB_E0D45668FBE6.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_E0D45668FBE62

Sensitive liquid biopsy monitoring correlates with outcome in the prospective international GPOH-DCOG high-risk neuroblastoma RT-qPCR validation study

Authors: Zogchel, L.M.J. van, Decarolis, B., Wezel, E.M. van, Zappeij-Kannegieter, L., Gelineau, N.U., Schumacher-Kuckelkorn, R., Simon, T., Berthold, F., Noesel, M.M. van, Fiocco, M., Schoot, C.E. van der, Hero, B., Stutterheim, J., Tytgat, G.A.M.

Contributors: Divisie Beeld & Oncologie, Onderzoek Beeld, Cancer

Source: J Exp Clin Cancer Res
Journal of Experimental & Clinical Cancer Research, Vol 43, Iss 1, Pp 1-16 (2024)

Subject Terms: Male, 0301 basic medicine, Cancer Research, Research, Liquid Biopsy, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, Infant, Prognosis, Real-Time Polymerase Chain Reaction, Female [MeSH], Humans [MeSH], Neuroblastoma/genetics [MeSH], Prospective Studies [MeSH], Neuroblastoma/mortality [MeSH], Neuroblastoma/pathology [MeSH], Real-Time Polymerase Chain Reaction/methods [MeSH], Liquid Biopsy/methods [MeSH], Infant [MeSH], Male [MeSH], Biomarkers, Tumor/genetics [MeSH], Prognosis [MeSH], Child [MeSH], Child, Preschool [MeSH], Neuroblastoma, 03 medical and health sciences, 0302 clinical medicine, Oncology, Child, Preschool, Biomarkers, Tumor, Humans, Female, Prospective Studies, Child, RC254-282

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39722049
https://doaj.org/article/4aff26c2b0f04188895371500b0cde78
https://dspace.library.uu.nl/handle/1874/459899
https://pure.amsterdamumc.nl/en/publications/b42b7119-598d-4d90-831c-ec4cb70c09e8
https://doi.org/10.1186/s13046-024-03261-y
https://repository.publisso.de/resource/frl:6521099
https://hdl.handle.net/1887/4208865

Automated total nucleic acid extraction with magnetic beads for the detection of Plasmodium falciparum in large study cohorts

Authors: Inoue, Juliana, Huber, Nina, Fendel, Rolf, Held, Jana

Source: Malar J
Malaria Journal, Vol 23, Iss 1, Pp 1-8 (2024)

Subject Terms: Automation, Laboratory, 0301 basic medicine, Plasmodium, Nucleic acid extraction, RC955-962, Plasmodium falciparum, Methodology, Infectious and parasitic diseases, RC109-216, DNA, Protozoan, Real-Time Polymerase Chain Reaction, Cohort Studies, qPCR, Automation, 03 medical and health sciences, 0302 clinical medicine, Automation, Laboratory/methods [MeSH], RNA, Ribosomal, 18S/analysis [MeSH], Humans [MeSH], Plasmodium falciparum/genetics [MeSH], RNA, Protozoan/analysis [MeSH], Malaria, Falciparum/diagnosis [MeSH], RNA, Ribosomal, 18S/genetics [MeSH], DNA, Protozoan/isolation, RNA, Protozoan/isolation, Real-Time Polymerase Chain Reaction/methods [MeSH], Cohort Studies [MeSH], Plasmodium falciparum/isolation, DNA, Protozoan/genetics [MeSH], Malaria, Falciparum/parasitology [MeSH], Arctic medicine. Tropical medicine, RNA, Ribosomal, 18S, Humans, Malaria, Falciparum, RNA, Protozoan

Access URL: https://pubmed.ncbi.nlm.nih.gov/39716256
https://doaj.org/article/61929349a09841ac961876f0e5297693
https://repository.publisso.de/resource/frl:6517919

Evaluation of Currently Available Laboratory Methods to Detect Terbinafine Resistant Dermatophytes Including a Gradient Strip for Terbinafine, EUCAST Microdilution E.Def 11.0, a Commercial Real‐Time PCR Assay, Squalene Epoxidase Sequencing and Whole Genome Sequencing

Authors: Sacheli, Rosalie, Egrek, Sabrina, El Moussaoui, Khalid, DARFOUF, Rajae, Adjetey, Akole Bahun, Hayette, Marie-Pierre

Source: Mycoses. 67

Subject Terms: 0301 basic medicine, Antifungal Agents, diagnostic, Dermatology, Microbial Sensitivity Tests, Arthrodermataceae/drug effects, Real-Time Polymerase Chain Reaction/methods, Real-Time Polymerase Chain Reaction, Microbiology, Squalene Monooxygenase/genetics, 03 medical and health sciences, Whole Genome Sequencing/methods, Microbiologie, Drug Resistance, Fungal, Humans, DermaGenius resistance, Terbinafine, whole genome sequencing, 0303 health sciences, Trichophyton indotineae, Arthrodermataceae/genetics, Whole Genome Sequencing, Arthrodermataceae, Life sciences, terbinafine resistance, Terbinafine/pharmacology, Infectious Diseases, Squalene Monooxygenase, Antifungal Agents/pharmacology, Sciences du vivant, squalene epoxidase, Microbial Sensitivity Tests/methods, gradient strips, laboratory

Access URL: https://pubmed.ncbi.nlm.nih.gov/39658811

Comparison of different diagnostic protocols for the detection of Toxocara spp. in faecal samples of cats and dogs

Authors: Winterfeld, Deliah Tamsyn, Schauer, Birgit, Globokar, Majda, Pantchev, Nikola, Mouchantat, Susan, Conraths, Franz Josef, Kampen, Helge, Dups-Bergmann, Johanna, Schares, Gereon, Maksimov, Pavlo

Source: Parasit Vectors
Parasites & Vectors, Vol 17, Iss 1, Pp 1-14 (2024)

Subject Terms: Toxocariasis, Research, Toxocara canis, Infectious and parasitic diseases, RC109-216, Sequential sieving, DNA, Helminth, Cat Diseases, Sensitivity and Specificity, qPCR, Feces, Sedimentation-flotation technique, Dogs, Toxocariasis/diagnosis [MeSH], Dog Diseases/diagnosis [MeSH], DNA, Helminth/isolation, Cat Diseases/diagnosis [MeSH], Toxocara/genetics [MeSH], Feces/parasitology [MeSH], Sensitivity and Specificity [MeSH], Toxocara canis/isolation, Toxocara canis/genetics [MeSH], Cat Diseases/parasitology [MeSH], Toxocara/isolation, Parasite Egg Count/methods [MeSH], Cats [MeSH], Dog Diseases/parasitology [MeSH], Toxocariasis/parasitology [MeSH], Animals [MeSH], Dogs [MeSH], Multiplex Polymerase Chain Reaction/methods [MeSH], Sensitivity, DNA extraction, DNA, Helminth/genetics [MeSH], Cats, Animals, Dog Diseases, Toxocara cati, Multiplex Polymerase Chain Reaction, Parasite Egg Count, Toxocara

Access URL: https://pubmed.ncbi.nlm.nih.gov/39449044
https://doaj.org/article/8a49c8df7f854db7a506c0ef96e1241f
https://repository.publisso.de/resource/frl:6520783

COL25A1 and METAP1D DNA methylation are promising liquid biopsy epigenetic biomarkers of colorectal cancer using digital PCR

Authors: Overs, Alexis, Peixoto, Paul, Hervouet, Eric, Molimard, Chloé, Monnien, Franck, Durand, Jules, Guittaut, Michael, Vienot, Angélique, Viot, Julien, Herfs, Michael, Borg, Christophe, Feugeas, Jean-Paul, Selmani, Zohair

Source: Clin Epigenetics
Clinical Epigenetics, Vol 16, Iss 1, Pp 1-15 (2024)

Subject Terms: Male, Polymerase Chain Reaction/methods, Oncologie, Colorectal Neoplasms/diagnosis, QH426-470, Sciences de la santé humaine, Polymerase Chain Reaction, Epigenesis, Genetic, Circulating Tumor DNA, Circulating Tumor DNA/blood, Genetics, Biomarkers, Tumor, Humans, Human health sciences, Molecular Biology, Genetics (clinical), Aged, Circulating tumor DNA, COL25A1, DNA methylation, Circulating Tumor DNA/genetics, Liquid biopsy, Research, Liquid Biopsy, Computational Biology, Epigenesis, Genetic/genetics, Biomarker, Liquid Biopsy/methods, Computational Biology/methods, DNA Methylation, Middle Aged, Colorectal cancer, Colorectal Neoplasms/genetics, Oncology, Biomarkers, Tumor/blood, Medicine, Female, Biomarkers, Tumor/genetics, METAP1D, Colorectal Neoplasms, Digital PCR, DNA Methylation/genetics, Developmental Biology

Access URL: https://pubmed.ncbi.nlm.nih.gov/39425144
https://doaj.org/article/16e1bc95891445e18ea6f6d92eedc8ef

A multicentre external quality assessment: A first step to standardise PCR protocols for the diagnosis of histoplasmosis and coccidioidomycosis: A first step to standardise PCR protocols for the diagnosis of histoplasmosis and coccidioidomycosis

Authors: Dunja Wilmes, Ferry Hagen, Cristina Verissimo, Alexandre Alanio, Volker Rickerts, Maria José Buitrago

Contributors: Instituto de Salud Carlos III, MMB, MMB Medische Staf, Vitality Research Group, Internal Medicine

Source: Repisalud
Instituto de Salud Carlos III (ISCIII)

Subject Terms: ddc:610, Coccidioidomycosis, Coccidioides, Coccidioides/genetics, multicentre trial, Histoplasma, Dermatology, Real-Time Polymerase Chain Reaction/methods, kinetic polymerase chain reaction, Real-Time Polymerase Chain Reaction, 3. Good health, Histoplasma/genetics, PCR, Infectious Diseases, Mycoses, Humans, Multicenter Studies as Topic, quality control, Coccidioidomycosis/diagnosis, 610 Medizin und Gesundheit, Histoplasmosis, Coccidiodes, Histoplasmosis/diagnosis

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37169736
http://hdl.handle.net/20.500.12105/16239
https://pure.knaw.nl/portal/en/publications/b4b19dd1-c7ce-45d7-8eb4-dcec81e20211
https://hdl.handle.net/20.500.11755/b4b19dd1-c7ce-45d7-8eb4-dcec81e20211
https://doi.org/10.1111/myc.13603
https://dspace.library.uu.nl/handle/1874/459145
http://edoc.rki.de/176904/12743
http://edoc.rki.de/176904/11351
https://biblio.vub.ac.be/vubir/(4ec62be4-d48d-4d3d-8e77-a477abe55c30).html

Analytical and clinical evaluation of a novel real-time PCR-based detection kit for Mpox virus

Authors: Bunse, Till, Ziel, Anne, Hagen, Philipp, Rigopoulos, George, Yasar, Umit, Inan, Hakan, Köse, Gurbet, Eigner, Ulrich, Kaiser, Rolf, Bardeck, Nils, Köffer, Jasmin, Kolb, Melissa, Ren, Xiaomei, Tan, Deyong, Dai, Lizhong, Protzer, Ulrike, Wettengel, Jochen M.

Source: Med Microbiol Immunol

Subject Terms: Parapoxvirus, 0301 basic medicine, 0303 health sciences, Real-Time Polymerase Chain Reaction, Sensitivity and Specificity, ddc, Disease Outbreaks, Mpox (monkeypox)/diagnosis [MeSH], Humans [MeSH], Parapoxvirus/genetics [MeSH], Reagent Kits, Diagnostic [MeSH], Real-Time Polymerase Chain Reaction/methods [MeSH], Mpox (monkeypox)/virology [MeSH], Germany/epidemiology [MeSH], Disease Outbreaks [MeSH], Original Investigation, Mpox, Sensitivity and Specificity [MeSH], Limit of Detection [MeSH], Mpox detection assay, MPXV, Molecular Diagnostic Techniques/methods [MeSH], Parapoxvirus/isolation, Clinical diagnostics, Mpox, Monkeypox, 03 medical and health sciences, Molecular Diagnostic Techniques, Limit of Detection, Germany, Humans, Reagent Kits, Diagnostic

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39101951
https://repository.publisso.de/resource/frl:6500345
https://mediatum.ub.tum.de/doc/1770785/document.pdf

Clinical Impact of Polymerase Chain Reaction–Based Aspergillus and Azole Resistance Detection in Invasive Aspergillosis: A Prospective Multicenter Study: A Prospective Multicenter Study

Authors: Huygens, Sammy, Dunbar, Albert, Buil, Jochem B., Klaassen, Corne H.W., Verweij, Paul E., van Dijk, Karin, de Jonge, Nick, Janssen, Jeroen J.WM., van der Velden, Walter J.FM., Biemond, Bart J., Bart, Aldert, Bruns, Anke H.W., Haas, Pieter-Jan A., Demandt, Astrid M.P., Oudhuis, Guy, von dem Borne, Peter, van der Beek, Martha T., Klein, Saskia K., Godschalk, Peggy, Span, Lambert F.R., Postma, Douwe F., Kampinga, Greetje A., Maertens, Johan, Lagrou, Katrien, Mercier, Toine, Moors, Ine, Boelens, Jerina, Selleslag, Dominik, Reynders, Marijke, Zandijk, Willemien, Doorduijn, Jeanette K., Cornelissen, Jan J., Schauwvlieghe, Alexander F.AD., Rijnders, Bart J.A.

Contributors: MS Reumatologie/Immunologie/Infectie, Infection & Immunity, MS Vasculaire & Endocrinologie, MMB

Source: Clin Infect Dis
Huygens, S, Dunbar, A, Buil, J B, Klaassen, C H W, Verweij, P E, van Dijk, K, de Jonge, N, Janssen, J J W M, van der Velden, W J F M, Biemond, B J, Bart, A, Bruns, A H W, Haas, P-J A, Demandt, A M P, Oudhuis, G, von dem Borne, P, van der Beek, M T, Klein, S K, Godschalk, P, Span, L F R, Postma, D F, Kampinga, G A, Maertens, J, Lagrou, K, Mercier, T, Moors, I, Boelens, J, Selleslag, D, Reynders, M, Zandijk, W, Doorduijn, J K, Cornelissen, J J, Schauwvlieghe, A F A D & Rijnders, B J A 2023, 'Clinical Impact of Polymerase Chain Reaction-Based Aspergillus and Azole Resistance Detection in Invasive Aspergillosis : A Prospective Multicenter Study', Clinical Infectious Diseases, vol. 77, no. 1, pp. 38-45. https://doi.org/10.1093/cid/ciad141
Clinical Infectious Diseases, 77, 1, pp. 38-45
CLINICAL INFECTIOUS DISEASES

Subject Terms: Medical Microbiology - Radboud University Medical Center, Microbiology (medical), Azoles, Antifungal Agents, Immunology, Drug Resistance, Real-Time Polymerase Chain Reaction/methods, Real-Time Polymerase Chain Reaction, Microbiology, Radboudumc 4: lnfectious Diseases and Global Health Medical Microbiology, BRONCHOALVEOLAR LAVAGE, VALIDATION, Aspergillus PCR, azole resistance, Aspergillosis/diagnosis, Drug Resistance, Fungal, Medicine and Health Sciences, Major Article, Humans, Aspergillosis, Prospective Studies, 11 Medical and Health Sciences, Invasive Pulmonary Aspergillosis/diagnosis, Invasive Pulmonary Aspergillosis, invasive aspergillosis, Science & Technology, FUMIGATUS, Triazoles/pharmacology, Azoles/pharmacology, Aspergillus fumigatus, 3202 Clinical sciences, 06 Biological Sciences, Triazoles, 3. Good health, Infectious Diseases, Fungal, Aspergillus, Radboudumc 5: Inflammatory diseases Haematology, VORICONAZOLE, Antifungal Agents/pharmacology, Life Sciences & Biomedicine, clinical impact, Invasive Fungal Infections/diagnosis, Invasive Fungal Infections

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/36905147
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/294639
https://doi.org/10.1093/cid/ciad141
https://pure.eur.nl/en/publications/bfd52c3e-e6eb-459f-8e6d-8c7e8cbe95b3
https://doi.org/10.1093/cid/ciad141
https://hdl.handle.net/11370/0156cb61-fc72-473f-a3fa-b3d78e83a90e
https://research.rug.nl/en/publications/0156cb61-fc72-473f-a3fa-b3d78e83a90e
https://doi.org/10.1093/cid/ciad141
https://cris.maastrichtuniversity.nl/en/publications/7dc3898d-b69a-4336-950b-9714b1195232
https://doi.org/10.1093/cid/ciad141
https://research.vumc.nl/en/publications/8ad241d4-cb6f-4d3e-92eb-98274c966ef8
https://dspace.library.uu.nl/handle/1874/459168
https://hdl.handle.net/1887/3643265
https://pure.amsterdamumc.nl/en/publications/dc918370-8d05-430f-8e62-c48822ecdb0f
https://doi.org/10.1093/cid/ciad141
https://lirias.kuleuven.be/handle/20.500.12942/720641
https://doi.org/10.1093/cid/ciad141
https://hdl.handle.net/2066/294639
https://repository.ubn.ru.nl//bitstream/handle/2066/294639/294639.pdf
https://hdl.handle.net/1887/3714019
https://hdl.handle.net/1887/3714224
https://biblio.ugent.be/publication/01HPHHYSNVS1GFD3T0AJ07HRAC/file/01HPHJXFHNFT21645EMKVF325T
http://hdl.handle.net/1854/LU-01HPHHYSNVS1GFD3T0AJ07HRAC
http://doi.org/10.1093/cid/ciad141
https://biblio.ugent.be/publication/01HPHHYSNVS1GFD3T0AJ07HRAC

Development and Characterization of Synthetic Norovirus RNA for Use in Molecular Detection Methods

Authors: Eun-Jung Cho, Younggil Cha, Su Kyung Lee, Han-Sung Kim, Jae-Seok Kim, Eun Jin Lee, Nuri Lee, Ki Ho Hong, Hee Jin Huh, Young Joo Cha, Hyun Soo Kim

Contributors: Eun-Jung Cho, Younggil Cha, Su Kyung Lee, Han-Sung Kim, Jae-Seok Kim, Eun Jin Lee, Nuri Lee, Ki Ho Hong, Hee Jin Huh, Young Joo Cha, Hyun Soo Kim, Hong, Ki Ho

Source: Ann Lab Med

Subject Terms: 0301 basic medicine, 0303 health sciences, Genotype, Characterization, Noroviruses, Norovirus, Uncertainty, Viral / analysis, Real-Time Polymerase Chain Reaction, Multicenter study, 3. Good health, Real-Time Polymerase Chain Reaction / methods, 03 medical and health sciences, Caliciviridae Infections* / diagnosis, Viral / genetics, Republic of Korea, RNA, Humans, RNA, Viral, Original Article, Reference material, Norovirus* / genetics, Caliciviridae Infections

Access URL: https://pubmed.ncbi.nlm.nih.gov/36045055

Reduction of intrapartum antibiotic prophylaxis by combining risk factor assessment with a rapid bedside intrapartum polymerase chain reaction testing for group B streptococci

Authors: C.M. Hartvigsen, S.Y. Nielsen, J.K. Møller, M.R. Khalil

Source: Hartvigsen, C M, Nielsen, S Y, Møller, J K & Khalil, M R 2022, 'Reduction of intrapartum antibiotic prophylaxis by combining risk factor assessment with a rapid bedside intrapartum polymerase chain reaction testing for group B streptococci', European Journal of Obstetrics and Gynecology and Reproductive Biology, vol. 272, pp. 173-176. https://doi.org/10.1016/j.ejogrb.2022.03.034
Hartvigsen, C M, Nielsen, S Y, Møller, J K & Khalil, M R 2022, ' Reduction of intrapartum antibiotic prophylaxis by combining risk factor assessment with a rapid bedside intrapartum polymerase chain reaction testing for group B streptococci ', European Journal of Obstetrics and Gynecology and Reproductive Biology, vol. 272, pp. 173-176 . https://doi.org/10.1016/j.ejogrb.2022.03.034

Subject Terms: Male, Polymerase Chain Reaction/methods, Bacteriuria, Obstetric Labor, Premature/drug therapy, Antibiotic Prophylaxis/methods, Polymerase Chain Reaction, Streptococcus agalactiae, Antimicrobial Stewardship, 03 medical and health sciences, Obstetric Labor, Premature, 0302 clinical medicine, Pregnancy, Risk Factors, Streptococcal Infections, Vertical, Humans, Pregnancy Complications, Infectious, Antibiotic prophylaxis, Pregnancy Complications, Infectious/drug therapy, Infant, Newborn, Obstetric, Antibiotic Prophylaxis, Labor, Infectious Disease Transmission, Vertical, Polymerase chain reaction, 3. Good health, Infectious disease transmission, Neonatal sepsis, Streptococcal Infections/diagnosis, Female, Infectious Disease Transmission, Vertical/prevention & control

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/35334420
https://pure.au.dk/portal/en/publications/455e331a-5061-426b-80e3-ccaa92601b1c
https://portal.findresearcher.sdu.dk/da/publications/7dda89ff-997e-4205-b09d-7db7928513f6
https://doi.org/10.1016/j.ejogrb.2022.03.034
https://findresearcher.sdu.dk:8443/ws/files/200913311/PIIS0301211522002779_1_.pdf
http://www.scopus.com/inward/record.url?scp=85126692144&partnerID=8YFLogxK
https://pure.au.dk/portal/en/publications/455e331a-5061-426b-80e3-ccaa92601b1c
https://doi.org/10.1016/j.ejogrb.2022.03.034
https://pure.au.dk/ws/files/352669813/1-s2.0-S0301211522002779.pdf