An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment

Authors: Haghi, Abbas, Marco Sola, Santiago, Álvarez Martí, Lluc, Diamantopoulos, Dionysios, Hagleitner, Christoph, Moretó Planas, Miquel

Source: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Subject Terms: 0301 basic medicine, Nucleotide sequence -- Data processing, Matrius de portes programables per l'usuari, Bioinformatics, Acceleration, 0206 medical engineering, Field programmable gate arrays, Genomics, 02 engineering and technology, WFA, Biologia computacional, 3. Good health, Computational biology, CAPI, Genòmica, 03 medical and health sciences, Bioinformàtica, Àrees temàtiques de la UPC::Informàtica::Arquitectura de computadors, Co-design, High performance computing, Informàtica::Arquitectura de computadors [Àrees temàtiques de la UPC], Càlcul intensiu (Informàtica), FPGA, Alignment

File Description: application/pdf

Access URL: https://hdl.handle.net/2117/366104
https://doi.org/10.1109/fpl53798.2021.00033

ERStruct: a fast Python package for inferring the number of top principal components from whole genome sequencing data

Authors: Yang, Zhiliang, Xu, Yuyang, Yao, Minhao, Wang, Gao, Liu, Zhonghua

Subject Terms: Nucleotide sequence--Data processing, Genomes--Data processing, Python (Computer program language)

Availability: https://doi.org/10.7916/kx4x-e654

Big jump in border cases anticipated

Authors: Morton, Jamie, Cohen, David, 1951 September 15-

Source: Otago daily times, 25 Jul 2022; p.5,7

Access URL: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE82841943

Chinese population analyses based on next-generation sequencing data

Authors: Ou, Min, 区敏

Subject Terms: Human population genetics - China - Data processing, Nucleotide sequence - Data processing

Relation: HKU Theses Online (HKUTO); 991044897477003414; https://hub.hku.hk/handle/10722/353400

Availability: https://hub.hku.hk/handle/10722/353400

Next-generation DNA sequencing of oral microbes at the Sir John Walsh Research Institute : technologies, tools and achievements

Authors: Heng, Nicholas C. K., Stanton, Jo-Ann L.

Source: Journal of the Royal Society of New Zealand, Mar 2020; v.50 n.1:p.91-107

Access URL: http://www.tandfonline.com/doi/pdf/10.1080/03036758.2019.1687530
https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=FL53179682

An ASIC application for DNA sequencing by Smith-Waterman algorithm (DNASSWA)

Authors: Lin, Cheng-Hsien Kenny

Subject Terms: Nucleotide sequence -- Data processing, School of Information Technology and Electrical Engineering, 08 Information and Computing Sciences, Application-specific integrated circuits

Access URL: https://api.library.uq.edu.au/view/UQ:295057/THE18716.pdf
https://api.library.uq.edu.au/view/UQ:295057

Computational methods to bridge genomics data with medical applications

Authors: Su, Junhao, 苏俊豪

Subject Terms: Nucleotide sequence - Data processing

Relation: HKU Theses Online (HKUTO); Su, J. [苏俊豪]. (2024). Computational methods to bridge genomics data with medical applications. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR.; 991044736607603414; https://hub.hku.hk/handle/10722/335159

Availability: https://hub.hku.hk/handle/10722/335159

Towards understanding genome regulation via high-resolution analysis of chromatin accessibility

Authors: Dai, L

Contributors: Lunter, G, Hughes, J

Subject Terms: Functional genomics, Nucleotide sequence--Data processing, Bioinformatics

Availability: https://doi.org/10.5287/ora-dav75pnkb
https://ora.ox.ac.uk/objects/uuid:f7ef04c8-ab4d-4c68-b655-dc13847e6478

Large scale single cell methods and pan-cancer analysis

Authors: Fang, Xiunan, 方秀南

Contributors: Ho, JWK

Subject Terms: Nucleotide sequence - Data processing, Cancer - Data processing

Relation: HKU Theses Online (HKUTO); 991044829506303414; https://hub.hku.hk/handle/10722/344190

Availability: https://hub.hku.hk/handle/10722/344190

Practical Bioinformatics

Authors: Michael Agostino

Resource Type: eBook.

Subjects: Bioinformatics, Nucleotide sequence--Data processing

Categories: SCIENCE / Bioinformatics, SCIENCE / Life Sciences / Genetics & Genomics, SCIENCE / Life Sciences / Molecular Biology

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Authors: Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.

Subject Terms: Machine learning, Nucleotide sequence--Data processing, Electrical engineering, Computer science

Relation: https://doi.org/10.7916/D8K65WHR

Availability: https://doi.org/10.7916/D8K65WHR

RNAseq data from Arabidopsis and BC204 treatment

Authors: Nicholas Le Maitre, Paul Hills, Jens Kossmann, Hanno Loubser, Beatrix Coetzee, Adriaanus Petrus Claassens

Subject Terms: Genomics and transcriptomics, RNAseq, Arabidopsis, Nucleotide sequence -- Data processing, Plant extracts, Gene expression, Citrus, Arabidopsis thaliana -- Effect of chemicals on, Growth (Plants) -- Effect of stress on, Citrus -- Quality

Relation: https://figshare.com/articles/dataset/RNAseq_data_from_Arabidopsis_and_BC204_treatment/24658668

Availability: https://doi.org/10.25413/sun.24658668.v1
https://figshare.com/articles/dataset/RNAseq_data_from_Arabidopsis_and_BC204_treatment/24658668

Integration of Sequence Data from a Consanguineous Family with Genetic Data from an Outbred Population Identifies PLB1 as a Candidate Rheumatoid Arthritis Risk Gene

Authors: Diogo, Dorothee, Mouassess, Faten, Achkar, Walid A. L., Denny, Joshua C., Mirel, Daniel, Gupta, Namrata, Gabriel, Stacy, Li, Gang, Eyler, Anne E., Carroll, Robert J., Trynka, Gosia, Saxena, Richa, Guchelaar, Henk-Jan, Huizinga, Tom W. J., Dieudé, Philippe, Moreland, Larry W., Bridges Jr., S. Louis, Miceli-Richard, Corinne, Choi, Hyon K., Kamatani, Yoichiro, Galan, Pilar, Lathrop, Mark, Raj, Towfique, De Jager, Philip L., Siminovitch, Katherine A., Mardis, Elaine R., Arayssi, Thurayya, Kazkaz, Layla A.

Subject Terms: Consanguinity, Rheumatoid arthritis--Etiology, Nucleotide sequence--Data processing, Genetics

Relation: https://doi.org/10.7916/D8KS6RW8

Availability: https://doi.org/10.7916/D8KS6RW8

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Authors: Fabbro, Cristian Del, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M.

Subject Terms: Genetic algorithms--Data processing, Algorithms--Evaluation, Nucleotide sequence--Data processing, Genetics

Relation: https://doi.org/10.7916/D8WD40XV

Availability: https://doi.org/10.7916/D8WD40XV

Bioinformatics analyses for next-generation sequencing of plasma DNA.

Contributors: Jiang, Peiyong., Chinese University of Hong Kong Graduate School. Division of Chemical Pathology.

Subject Terms: DNA--Analysis--Data processing, Nucleotide sequence--Data processing, Bioinformatics, Sequence Analysis, DNA--methods, Computational Biology--methods

File Description: electronic resource; remote; 1 online resource (xvi, 105 leaves) : ill. (some col.)

Relation: cuhk:328467; http://library.cuhk.edu.hk/record=b5549423

Availability: http://library.cuhk.edu.hk/record=b5549423
https://repository.lib.cuhk.edu.hk/en/item/cuhk-328467

Biophysical studies: Interaction of the Aptamer-protein complexes

Authors: Heredia Negron, Frances L.

Contributors: Parés-Matos, Elsie I., College of Arts and Sciences - Sciences, Bauer, William, Ríos-Steiner, Jorge, Ríos-Guillet, Robert, Resto-Irizarry, Pedro J., Department of Chemistry, Rúa de la Asunción, Armando

Subject Terms: Aptamer, Biosensors, DNA crystallography, Aptamer-protein complexes, Aptamer’s machine learning, Nucleotides - Analysis, Nucleotide sequence - Data processing, X-ray crystallography, Machine learning, Protein binding

File Description: application/pdf

Relation: https://hdl.handle.net/20.500.11801/2908

Availability: https://hdl.handle.net/20.500.11801/2908

Genomics : where are we now?

Authors: Bezzina Wettinger, Stephanie

Subject Terms: Editorials, Genomics -- Research, Nucleotide sequence -- Data processing, Nucleotide sequence -- Methodology

Relation: https://www.um.edu.mt/library/oar/handle/123456789/51454

Availability: https://www.um.edu.mt/library/oar/handle/123456789/51454
https://doi.org/10.14614/GENOMICS/11/19

Applications of evolutionary algorithms on biomedical systems.

Contributors: Tse, Sui Man., Chinese University of Hong Kong Graduate School. Division of Computer Science and Engineering.

Subject Terms: Cancer--Chemotherapy--Data processing, Chemotherapy, Combination--Data processing, Nucleotide sequence--Data processing, Evolutionary computation, Neoplasms--drug therapy, Antineoplastic Combined Chemotherapy Protocols, Drug Therapy, Computer-Assisted, Sequence Analysis, DNA, Algorithms

File Description: print; xv, 104 leaves : ill.; 30 cm.

Relation: cuhk:325933; http://library.cuhk.edu.hk/record=b5893179

Availability: http://library.cuhk.edu.hk/record=b5893179
https://repository.lib.cuhk.edu.hk/en/item/cuhk-325933

Pattern discovery in sequence databases : algorithms and applications to DNA/protein classification

Authors: Chirn, Gung-Wei

Source: Dissertations

Subject Terms: Nucleotide sequence--Data processing, Pattern recognition systems, Computer Sciences, Databases and Information Systems, Management Information Systems

File Description: application/pdf

Relation: https://digitalcommons.njit.edu/dissertations/1013; https://digitalcommons.njit.edu/context/dissertations/article/2068/viewcontent/njit_etd1996_089.pdf

Availability: https://digitalcommons.njit.edu/dissertations/1013
https://digitalcommons.njit.edu/context/dissertations/article/2068/viewcontent/njit_etd1996_089.pdf

Computers and DNA

Authors: Thomas Marr, George I. Bell

Resource Type: eBook.

Subjects: DNA, Information storage and retrieval systems--Nucleotide sequence, Nucleotide sequence--Data processing--Congresses, DNA--Congresses

Categories: SCIENCE / Bioinformatics, COMPUTERS / Business & Productivity Software / Databases, COMPUTERS / Data Science / Machine Learning