An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment

Συγγραφείς: Haghi, Abbas, Marco Sola, Santiago, Álvarez Martí, Lluc, Diamantopoulos, Dionysios, Hagleitner, Christoph, Moretó Planas, Miquel

Πηγή: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Θεματικοί όροι: 0301 basic medicine, Nucleotide sequence -- Data processing, Matrius de portes programables per l'usuari, Bioinformatics, Acceleration, 0206 medical engineering, Field programmable gate arrays, Genomics, 02 engineering and technology, WFA, Biologia computacional, 3. Good health, Computational biology, CAPI, Genòmica, 03 medical and health sciences, Bioinformàtica, Àrees temàtiques de la UPC::Informàtica::Arquitectura de computadors, Co-design, High performance computing, Informàtica::Arquitectura de computadors [Àrees temàtiques de la UPC], Càlcul intensiu (Informàtica), FPGA, Alignment

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://hdl.handle.net/2117/366104
https://doi.org/10.1109/fpl53798.2021.00033

ERStruct: a fast Python package for inferring the number of top principal components from whole genome sequencing data

Συγγραφείς: Yang, Zhiliang, Xu, Yuyang, Yao, Minhao, Wang, Gao, Liu, Zhonghua

Θεματικοί όροι: Nucleotide sequence--Data processing, Genomes--Data processing, Python (Computer program language)

Διαθεσιμότητα: https://doi.org/10.7916/kx4x-e654

Big jump in border cases anticipated

Συγγραφείς: Morton, Jamie, Cohen, David, 1951 September 15-

Πηγή: Otago daily times, 25 Jul 2022; p.5,7

Σύνδεσμος πρόσβασης: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE82841943

Chinese population analyses based on next-generation sequencing data

Συγγραφείς: Ou, Min, 区敏

Θεματικοί όροι: Human population genetics - China - Data processing, Nucleotide sequence - Data processing

Relation: HKU Theses Online (HKUTO); 991044897477003414; https://hub.hku.hk/handle/10722/353400

Διαθεσιμότητα: https://hub.hku.hk/handle/10722/353400

Next-generation DNA sequencing of oral microbes at the Sir John Walsh Research Institute : technologies, tools and achievements

Συγγραφείς: Heng, Nicholas C. K., Stanton, Jo-Ann L.

Πηγή: Journal of the Royal Society of New Zealand, Mar 2020; v.50 n.1:p.91-107

Σύνδεσμος πρόσβασης: http://www.tandfonline.com/doi/pdf/10.1080/03036758.2019.1687530
https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=FL53179682

An ASIC application for DNA sequencing by Smith-Waterman algorithm (DNASSWA)

Συγγραφείς: Lin, Cheng-Hsien Kenny

Θεματικοί όροι: Nucleotide sequence -- Data processing, School of Information Technology and Electrical Engineering, 08 Information and Computing Sciences, Application-specific integrated circuits

Σύνδεσμος πρόσβασης: https://api.library.uq.edu.au/view/UQ:295057/THE18716.pdf
https://api.library.uq.edu.au/view/UQ:295057

Computational methods to bridge genomics data with medical applications

Συγγραφείς: Su, Junhao, 苏俊豪

Θεματικοί όροι: Nucleotide sequence - Data processing

Relation: HKU Theses Online (HKUTO); Su, J. [苏俊豪]. (2024). Computational methods to bridge genomics data with medical applications. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR.; 991044736607603414; https://hub.hku.hk/handle/10722/335159

Διαθεσιμότητα: https://hub.hku.hk/handle/10722/335159

Towards understanding genome regulation via high-resolution analysis of chromatin accessibility

Συγγραφείς: Dai, L

Συνεισφορές: Lunter, G, Hughes, J

Θεματικοί όροι: Functional genomics, Nucleotide sequence--Data processing, Bioinformatics

Διαθεσιμότητα: https://doi.org/10.5287/ora-dav75pnkb
https://ora.ox.ac.uk/objects/uuid:f7ef04c8-ab4d-4c68-b655-dc13847e6478

Large scale single cell methods and pan-cancer analysis

Συγγραφείς: Fang, Xiunan, 方秀南

Συνεισφορές: Ho, JWK

Θεματικοί όροι: Nucleotide sequence - Data processing, Cancer - Data processing

Relation: HKU Theses Online (HKUTO); 991044829506303414; https://hub.hku.hk/handle/10722/344190

Διαθεσιμότητα: https://hub.hku.hk/handle/10722/344190

Practical Bioinformatics

Συγγραφείς: Michael Agostino

Resource Type: eBook.

Θέματα: Bioinformatics, Nucleotide sequence--Data processing

Categories: SCIENCE / Bioinformatics, SCIENCE / Life Sciences / Genetics & Genomics, SCIENCE / Life Sciences / Molecular Biology

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Συγγραφείς: Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.

Θεματικοί όροι: Machine learning, Nucleotide sequence--Data processing, Electrical engineering, Computer science

Relation: https://doi.org/10.7916/D8K65WHR

Διαθεσιμότητα: https://doi.org/10.7916/D8K65WHR

RNAseq data from Arabidopsis and BC204 treatment

Συγγραφείς: Nicholas Le Maitre, Paul Hills, Jens Kossmann, Hanno Loubser, Beatrix Coetzee, Adriaanus Petrus Claassens

Θεματικοί όροι: Genomics and transcriptomics, RNAseq, Arabidopsis, Nucleotide sequence -- Data processing, Plant extracts, Gene expression, Citrus, Arabidopsis thaliana -- Effect of chemicals on, Growth (Plants) -- Effect of stress on, Citrus -- Quality

Relation: https://figshare.com/articles/dataset/RNAseq_data_from_Arabidopsis_and_BC204_treatment/24658668

Διαθεσιμότητα: https://doi.org/10.25413/sun.24658668.v1
https://figshare.com/articles/dataset/RNAseq_data_from_Arabidopsis_and_BC204_treatment/24658668

Integration of Sequence Data from a Consanguineous Family with Genetic Data from an Outbred Population Identifies PLB1 as a Candidate Rheumatoid Arthritis Risk Gene

Συγγραφείς: Diogo, Dorothee, Mouassess, Faten, Achkar, Walid A. L., Denny, Joshua C., Mirel, Daniel, Gupta, Namrata, Gabriel, Stacy, Li, Gang, Eyler, Anne E., Carroll, Robert J., Trynka, Gosia, Saxena, Richa, Guchelaar, Henk-Jan, Huizinga, Tom W. J., Dieudé, Philippe, Moreland, Larry W., Bridges Jr., S. Louis, Miceli-Richard, Corinne, Choi, Hyon K., Kamatani, Yoichiro, Galan, Pilar, Lathrop, Mark, Raj, Towfique, De Jager, Philip L., Siminovitch, Katherine A., Mardis, Elaine R., Arayssi, Thurayya, Kazkaz, Layla A.

Θεματικοί όροι: Consanguinity, Rheumatoid arthritis--Etiology, Nucleotide sequence--Data processing, Genetics

Relation: https://doi.org/10.7916/D8KS6RW8

Διαθεσιμότητα: https://doi.org/10.7916/D8KS6RW8

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Συγγραφείς: Fabbro, Cristian Del, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M.

Θεματικοί όροι: Genetic algorithms--Data processing, Algorithms--Evaluation, Nucleotide sequence--Data processing, Genetics

Relation: https://doi.org/10.7916/D8WD40XV

Διαθεσιμότητα: https://doi.org/10.7916/D8WD40XV

Bioinformatics analyses for next-generation sequencing of plasma DNA.

Συνεισφορές: Jiang, Peiyong., Chinese University of Hong Kong Graduate School. Division of Chemical Pathology.

Θεματικοί όροι: DNA--Analysis--Data processing, Nucleotide sequence--Data processing, Bioinformatics, Sequence Analysis, DNA--methods, Computational Biology--methods

Περιγραφή αρχείου: electronic resource; remote; 1 online resource (xvi, 105 leaves) : ill. (some col.)

Relation: cuhk:328467; http://library.cuhk.edu.hk/record=b5549423

Διαθεσιμότητα: http://library.cuhk.edu.hk/record=b5549423
https://repository.lib.cuhk.edu.hk/en/item/cuhk-328467

Biophysical studies: Interaction of the Aptamer-protein complexes

Συγγραφείς: Heredia Negron, Frances L.

Συνεισφορές: Parés-Matos, Elsie I., College of Arts and Sciences - Sciences, Bauer, William, Ríos-Steiner, Jorge, Ríos-Guillet, Robert, Resto-Irizarry, Pedro J., Department of Chemistry, Rúa de la Asunción, Armando

Θεματικοί όροι: Aptamer, Biosensors, DNA crystallography, Aptamer-protein complexes, Aptamer’s machine learning, Nucleotides - Analysis, Nucleotide sequence - Data processing, X-ray crystallography, Machine learning, Protein binding

Περιγραφή αρχείου: application/pdf

Relation: https://hdl.handle.net/20.500.11801/2908

Διαθεσιμότητα: https://hdl.handle.net/20.500.11801/2908

Genomics : where are we now?

Συγγραφείς: Bezzina Wettinger, Stephanie

Θεματικοί όροι: Editorials, Genomics -- Research, Nucleotide sequence -- Data processing, Nucleotide sequence -- Methodology

Relation: https://www.um.edu.mt/library/oar/handle/123456789/51454

Διαθεσιμότητα: https://www.um.edu.mt/library/oar/handle/123456789/51454
https://doi.org/10.14614/GENOMICS/11/19

Applications of evolutionary algorithms on biomedical systems.

Συνεισφορές: Tse, Sui Man., Chinese University of Hong Kong Graduate School. Division of Computer Science and Engineering.

Θεματικοί όροι: Cancer--Chemotherapy--Data processing, Chemotherapy, Combination--Data processing, Nucleotide sequence--Data processing, Evolutionary computation, Neoplasms--drug therapy, Antineoplastic Combined Chemotherapy Protocols, Drug Therapy, Computer-Assisted, Sequence Analysis, DNA, Algorithms

Περιγραφή αρχείου: print; xv, 104 leaves : ill.; 30 cm.

Relation: cuhk:325933; http://library.cuhk.edu.hk/record=b5893179

Διαθεσιμότητα: http://library.cuhk.edu.hk/record=b5893179
https://repository.lib.cuhk.edu.hk/en/item/cuhk-325933

Pattern discovery in sequence databases : algorithms and applications to DNA/protein classification

Συγγραφείς: Chirn, Gung-Wei

Πηγή: Dissertations

Θεματικοί όροι: Nucleotide sequence--Data processing, Pattern recognition systems, Computer Sciences, Databases and Information Systems, Management Information Systems

Περιγραφή αρχείου: application/pdf

Relation: https://digitalcommons.njit.edu/dissertations/1013; https://digitalcommons.njit.edu/context/dissertations/article/2068/viewcontent/njit_etd1996_089.pdf

Διαθεσιμότητα: https://digitalcommons.njit.edu/dissertations/1013
https://digitalcommons.njit.edu/context/dissertations/article/2068/viewcontent/njit_etd1996_089.pdf

Computers and DNA

Συγγραφείς: Thomas Marr, George I. Bell

Resource Type: eBook.

Θέματα: DNA, Information storage and retrieval systems--Nucleotide sequence, Nucleotide sequence--Data processing--Congresses, DNA--Congresses

Categories: SCIENCE / Bioinformatics, COMPUTERS / Business & Productivity Software / Databases, COMPUTERS / Data Science / Machine Learning