Performance validation of microarray analysis methods

Συγγραφείς: Zervakis, M., Blazadonakis, M. E., Banti, A., Kafetzopoulos, D., Danilatou, V., Tsiknakis, M.

Πηγή: 2008 8th IEEE International Conference on BioInformatics and BioEngineering BioInformatics and BioEngineering, 2008. BIBE 2008. 8th IEEE International Conference on. :1-6 Oct, 2008

Relation: 2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE)

Developing and benchmarking microarray analysis methods

Συγγραφείς: Pearson, Richard Peter

Θεματικοί όροι: 572.8

Σύνδεσμος πρόσβασης: https://ethos.blethoshyku.com/concern/thesis_or_dissertations/549322

Optimal Selection of Microarray Analysis Methods Using a Conceptual Clustering Algorithm

Συγγραφείς: Rubio Escudero, Cristina, Romero Zaliz, Rocío, Cordón, Óscar, Harari, Óscar, Val, Coral del, Zwir, Igor

Συνεισφορές: Lenguajes y Sistemas Informáticos, TIC-254: Data Science and Big Data Lab

Περιγραφή αρχείου: application/pdf

Relation: EvoWorkshops 2006: Workshops on Applications of Evolutionary Computation (2006), pp. 172-183.; https://link.springer.com/chapter/10.1007/11732242_16; Berlin, Germany; https://hdl.handle.net/11441/139997; https://doi.org/10.1007/11732242_16

Διαθεσιμότητα: https://hdl.handle.net/11441/139997
https://doi.org/10.1007/11732242_16

Testing microarray analysis methods with semi-synthetic data

Συγγραφείς: Okoniewski, M., Naudts, B.

Πηγή: Intelligent Information Processing and Web Mining ISBN: 9783540213314
Advances in soft computing

Θεματικοί όροι: Computer. Automation, 0301 basic medicine, 03 medical and health sciences, 0206 medical engineering, 02 engineering and technology

Σύνδεσμος πρόσβασης: https://hdl.handle.net/10067/1037670151162165141

Comparison of High-Level Microarray Analysis Methods in the Context of Result Consistency.

Συγγραφείς: Kornel Chrominski, Magdalena Tkacz

Πηγή: PLoS ONE, Vol 10, Iss 6, p e0128845 (2015)

Θεματικοί όροι: Medicine, Science

Περιγραφή αρχείου: electronic resource

Relation: https://doaj.org/toc/1932-6203

Σύνδεσμος πρόσβασης: https://doaj.org/article/dfef9d089c23451898198893044188bd

Modifying Microarray Analysis Methods for Categorical Data — SAM and PAM for SNPs

Συγγραφείς: Holger Schwender

Πηγή: Studies in Classification, Data Analysis, and Knowledge Organization ISBN: 3540256776

Optimal Selection of Microarray Analysis Methods Using a Conceptual Clustering Algorithm

Συγγραφείς: Universidad de Sevilla. Departamento de Lenguajes y Sistemas Informáticos, Universidad de Sevilla. TIC-254: Data Science and Big Data Lab, Rubio Escudero, Cristina, Romero Zaliz, Rocío, Cordón, Óscar, Harari, Óscar, Val, Coral del, Zwir, Igor

Όροι ευρετηρίου: info:eu-repo/semantics/conferenceObject

Σύνδεσμος: https://hdl.handle.net/11441/139997
https://link.springer.com/chapter/10.1007/11732242_16
EvoWorkshops 2006: Workshops on Applications of Evolutionary Computation (2006), pp. 172-183.
https://link.springer.com/chapter/10.1007/11732242_16
Berlin, Germany

Short time-series microarray analysis: Methods and challenges

Συγγραφείς: Xuewei Wang, Ming Wu, Zheng Li, Christina Chan

Πηγή: BMC Syst Biol

Θεματικοί όροι: 0301 basic medicine, Time Factors, Applied Mathematics, 0206 medical engineering, 02 engineering and technology, 03 medical and health sciences, Gene Expression Regulation, Structural Biology, Modelling and Simulation, Sample Size, Commentary, Molecular Biology, Oligonucleotide Array Sequence Analysis

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-2-58
https://pubmed.ncbi.nlm.nih.gov/18605994

Biological detection of low radiation doses by combining results of two microarray analysis methods

Συγγραφείς: Mercier, G., primary

Πηγή: Nucleic Acids Research. 2004/01/02

Σύνδεσμος πρόσβασης: https://europepmc.org/articles/pmc373305?pdf=render

Performance validation of microarray analysis methods

Συγγραφείς: Danilatou Vasiliki(), Kafetzopoulos Dimitris(), Tsiknakis Manolis(), Blazadonakis Michalis E.(), Ζερβακης Μιχαηλ(http://users.isc.tuc.gr/~mzervakis), Zervakis Michail(http://users.isc.tuc.gr/~mzervakis), Banti Anna()

Θεματικοί όροι: Performance analysis, Filters, Cancer, Biomedical measurements, Genomics, Bioinformatics, Stability, Humans, System testing, Decision support systems

Relation: info:eu-repo/grantAgreement/EC/FP7/246686; http://purl.tuc.gr/dl/dias/EE40A3CD-624C-4EEB-9EFA-439827AE4C3B

Διαθεσιμότητα: http://purl.tuc.gr/dl/dias/EE40A3CD-624C-4EEB-9EFA-439827AE4C3B

An antigen microarray protocol for COVID-19 serological analysis.

Συγγραφείς: LONGWORTH, Joseph, DITTMAR, Gunnar

Πηγή: STAR Protocols, 2 (3), 100815 (2021-09-17)

Θεματικοί όροι: Antibody, Bioinformatics, Health Sciences, High Throughput Screening, Immunology, Proteomics, Antibodies, Viral, Antigens, Spike Glycoprotein, Coronavirus, Viral/blood, Viral/immunology, COVID-19/blood, COVID-19/immunology, COVID-19/virology, Humans, Microarray Analysis/methods, SARS-CoV-2/immunology, Coronavirus/blood, Coronavirus/immunology, COVID-19, Microarray Analysis, SARS-CoV-2, Biochemistry, Genetics and Molecular Biology (all), Neuroscience (all), Immunology and Microbiology (all), Medicine (all), General Immunology and Microbiology

Relation: https://api.elsevier.com/content/article/PII:S2666166721005219?httpAccept=text/xml; urn:issn:2666-1667; https://orbilu.uni.lu/handle/10993/58213; info:hdl:10993/58213; info:pmid:34462737; wos:001048876800005

Διαθεσιμότητα: https://orbilu.uni.lu/handle/10993/58213
https://orbilu.uni.lu/bitstream/10993/58213/1/1-s2.0-S2666166721005219-main.pdf
https://doi.org/10.1016/j.xpro.2021.100815

Optimal Selection of Microarray Analysis Methods Using a Conceptual Clustering Algorithm.

Συγγραφείς: Rothlauf, Franz, Branke, Jürgen, Cagnoni, Stefano, Costa, Ernesto, Cotta, Carlos, Drechsler, Rolf, Lutton, Evelyne, Machado, Penousal, Moore, Jason H., Romero, Juan, Smith, George D., Squillero, Giovanni, Takagi, Hideyuki, Rubio-Escudero, C.¹, Romero-Záliz, R.¹, Cordón, O.¹, Harari, O.¹, Val, C.¹, Zwir, I.^1,2

Πηγή: Applications of Evolutionary Computing. 2006, p172-183. 12p.

Comparative Gene Expression Analysis of the Coronal Pulp and Apical Pulp Complex in Human Immature Teeth

Συγγραφείς: Soo-Hyun, Kim, Seunghye, Kim, Yooseok, Shin, Hyo-Seol, Lee, Mijeong, Jeon, Seong-Oh, Kim, Sung-Won, Cho, Nikita B, Ruparel, Je Seon, Song

Συνεισφορές: College of Dentistry, Dept. of Pediatric Dentistry, Soo-Hyun Kim, Seunghye Kim, Yooseok Shin, Hyo-Seol Lee, Mijeong Jeon, Seong-Oh Kim, Sung-Won Cho, Nikita B. Ruparel, Je Seon Song, Kim, Seong Oh, Song, Je Seon, Shin, Yoo Seok, Cho, Sung Won

Πηγή: Journal of Endodontics. 42:752-759

Θεματικοί όροι: Male, 0301 basic medicine, Gene Expression, complementary DNA microarray, 0302 clinical medicine, Phosphoproteins/genetics, Collagen Type XII/genetics, Receptors, Dental Pulp/anatomy & histology, Tooth Apex/diagnostic imaging, Child, 2. Zero hunger, RNA/analysis, Extracellular Matrix Proteins, Hedgehog Proteins/genetics, Dental Pulp/diagnostic imaging, Immunohistochemistry, 3. Good health, Calbindin 1, Child, Preschool, Dental Pulp/cytology, Female, Chemokine/genetics, Collagen Type XII, human immature teeth, Cell Adhesion/genetics, GABA-A/genetics, Adolescent, Tooth Apex/growth & development, Transcription Factors/genetics, CX3C Chemokine Receptor 1, Real-Time Polymerase Chain Reaction/methods, Extracellular Matrix Proteins/genetics, Osteopontin/genetics, Young Adult, 03 medical and health sciences, Tooth Apex/anatomy & histology, Republic of Korea, Cell Adhesion, Humans, Hedgehog Proteins, Preschool, Microarray Analysis/methods, Dental Pulp/growth & development, Dental Pulp, Homeodomain Proteins, Calcium-Binding Proteins/genetics, Gene Expression Profiling, Calcium-Binding Proteins, Tooth Calcification/genetics, Apical pulp complex, Odontogenesis/genetics, Microarray Analysis, Laminin/genetics, coronal pulp, Tooth Apex/cytology, immunohistochemical staining, Calbindin 1/genetics, Synaptic Transmission/genetics, Laminin, Homeodomain Proteins/genetics, Neurogenesis/genetics

Περιγραφή αρχείου: 752~759

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/27020968

Developmental Gene Expression Profile of Axon Guidance Cues in Purkinje Cells During Cerebellar Circuit Formation

Συγγραφείς: Saywell, V., Cioni, J. M., Ango, Fabrice

Συνεισφορές: roussel, pascale

Πηγή: The Cerebellum. 13:307-317

Θεματικοί όροι: Neurons, 0301 basic medicine, 2. Zero hunger, 0303 health sciences, Purkinje Cells/*cytology/*metabolism, Neurogenesis, Gene Expression, Nerve Growth Factors/metabolism, Neurons/*cytology/metabolism, Cerebellum/*growth & development, Microarray Analysis, Nerve Net/*growth & development, Axons, [SDV] Life Sciences [q-bio], Mice, Purkinje Cells, 03 medical and health sciences, Gene Expression/physiology, Cerebellum, Animals, Axons/metabolism, Nerve Growth Factors, Neurogenesis/genetics/physiology, Nerve Net, Microarray Analysis/methods

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/24550128
https://hal.science/hal-01943331v1
https://doi.org/10.1007/s12311-014-0548-5

H. Schwender. Modifying Microarray Analysis Methods for Categorical Data – SAM and PAM for

Συγγραφείς: B. Efron, R. Tibshirani, J. Storey, V. Tusher Empirical, R. Gentleman, V. J. Carey, W. Huber, R. A. Irizarry, S. Dudoit, Snps In, C. Weihs, W. Gaul, H. Schwender, A. Krause, K. Ickstadt Comparison, J. D. Storey, Statistical Significance, Holger Schwender, Katja Ickstadt, Andreas Krause, Juliane Schäfer, Rainer Opgen-rhein

Συνεισφορές: The Pennsylvania State University CiteSeerX Archives

Πηγή: http://www.stat.uni-muenchen.de/~opgen/publications/GeneNet-Rnews2006.pdf.

Περιγραφή αρχείου: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.324.43

Διαθεσιμότητα: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.324.43
http://www.stat.uni-muenchen.de/~opgen/publications/GeneNet-Rnews2006.pdf

Antibodies to gp120 and PD-1 Expression on Virus-Specific CD8 + T Cells in Protection from Simian AIDS

Συγγραφείς: Monica, Vaccari, Rabih, Halwani, L Jean, Patterson, Adriano, Boasso, Jennifer, Beal, Elzbieta, Tryniszewska, Anna, Hryniewicz, David, Venzon, Elias K, Haddad, Mohamed, El-Far, Margherita, Rosati, George N, Pavlakis, Barbara K, Felber, Saleh, Al-Muhsen, Marjorie, Robert-Guroff, Rafick-Pierre, Sekaly, Genoveffa, Franchini

Πηγή: Journal of Virology. 87:3526-3537

Θεματικοί όροι: Szczepionki przeciw SAIDS - immunologia, 0301 basic medicine, Zwierzęta, Limfocyty T CD8-dodatnie - immunologia, Programmed Cell Death 1 Receptor, Simian Acquired Immunodeficiency Syndrome, SAIDS vaccines - immunology, viral - therapeutic use, CD8-Positive T-Lymphocytes, Antibodies, Viral, Przeciwciała przeciwwirusowe - stosowanie lecznicze, Antibodies, SAIDS vaccines - administration & dosage, Analiza metodą mikromacierzy - metody, 03 medical and health sciences, viral - blood, Viral Envelope Proteins, Zespół nabytego upośledzenia odporności małp - profilaktyka, Heterologous - immunology, heterologous - immunologia, Vaccines, DNA, Animals, Szczepionki - dawkowanie, Limfocyty T CD4-dodatnie - immunologia, ELISpot - metody, Vaccines, Synthetic, Enzyme-Linked Immunospot Assay - methods, Membrane Glycoproteins, Szczepienia ochronne - metody, Vaccination, Immunity, SAIDS Vaccines, CD4-positive T-lymphocytes - immunology, Przeciwciała przeciwwirusowe - krew, Simian immunodeficiency virus - immunology, Simian immunodeficiency virus - immunologia, 3. Good health, CD8-positive T-lymphocytes - immunology, Vaccines - administration & dosage, Szczepionki przeciw SAIDS - dawkowanie, Macaca, Simian Immunodeficiency Virus, Microarray analysis - methods, Simian Acquired Immunodeficiency Syndrome - prevention & control, Immunologic Memory

Σύνδεσμος πρόσβασης: https://jvi.asm.org/content/jvi/87/6/3526.full.pdf
https://pubmed.ncbi.nlm.nih.gov/23325679
http://jvi.asm.org/content/87/6/3526.long
https://doi.org/10.1128/JVI.02686-12

Investigation into mechanisms mediating the inhibitory effect of 1,4-benzodiazepines on mast cells by gene expression profiling

Συγγραφείς: Haenisch, Britta, Huber, Michael, Wilhelm, Thomas, Steffens, Michael, Molderings, Gerhard J

Πηγή: Life sciences 92(6-7), 345-351 (2013). doi:10.1016/j.lfs.2013.01.010

Θεματικοί όροι: Adult, Male, 0301 basic medicine, Gene Expression, HL-60 Cells, Flunitrazepam, Clonazepam: pharmacology, Mast Cells: drug effects, Polymerase Chain Reaction, Mastocytosis: genetics, Clonazepam, 03 medical and health sciences, Gene Expression: drug effects, Microarray Analysis: methods, Humans, Mast Cells, Aged, Benzodiazepinones, 0303 health sciences, Gene Expression Profiling, Gene Expression Profiling: methods, Middle Aged, Microarray Analysis, 4'-chlorodiazepam, 3. Good health, Benzodiazepinones: pharmacology, Flunitrazepam: pharmacology, Female, Polymerase Chain Reaction: methods, Mastocytosis

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/23352970
https://pub.dzne.de/record/136826

Analytical validation of a novel high multiplexing real-time PCR array for the identification of key pathogens causative of bacterial ventilator-associated pneumonia and their associated resistance genes

Συγγραφείς: Bogaerts, P, Hamels, Sandrine, De Mendonça, Ricardo, Huang, T D, Roisin, Sandrine, Remacle, Josè, Markine-Goriaynoff, N, de Longueville, Francoise, Plüster, W, Denis, Olivier, Glupczynski, Youri

Πηγή: Journal of antimicrobial chemotherapy, 68 (2

Θεματικοί όροι: DNA, Bacterial, 0301 basic medicine, Time Factors, Drug Resistance, Bactériologie médicale, Pneumonia, Ventilator-Associated -- microbiology, Real-Time Polymerase Chain Reaction, Microarray Analysis -- methods, 03 medical and health sciences, Drug Resistance, Bacterial, Bacterial -- genetics, Real-Time Polymerase Chain Reaction -- methods, 0303 health sciences, Bacteria, Bacterial, Biologie moléculaire, DNA, Bacterial -- genetics, Multiplex Polymerase Chain Reaction -- methods, Pneumonia, Ventilator-Associated, DNA, Pneumonia, Microarray Analysis, 3. Good health, Bacteria -- classification -- drug effects -- genetics -- isolation & purification, Médecine clinique [biologie clinique], Multiplex Polymerase Chain Reaction, Ventilator-Associated -- microbiology

Περιγραφή αρχείου: No full-text files

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/23065698
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/155292

Resequencing microarray for detection of human adenoviruses in patients with conjunctivitis

Συγγραφείς: Woo, PCY, Choi, GKY, Yuen, KY, EllisBehnke, R, Lau, SKP, Fung, HT, Shek, KC, Miao, J, Chan, BYL, Ng, KHL, Ngan, AHY, Que, TL, Kam, CW

Πηγή: J Clin Virol

Θεματικοί όροι: Adult, Male, Adenoviruses, Human - isolation and purification, Patients, Adolescent, Culture, Adenovirus Infections, Sensitivity and Specificity, Article, Adenovirus Infections, Human, Young Adult, Microarray Analysis - methods, Adenoviruses, Human - isolation and purification, Humans, Conjunctivitis - virology, Prospective Studies, Child, Resequencing microarray, Aged, Aged, 80 and over, Adenoviruses, Human, Human adenovirus, Middle Aged, Conjunctivitis, Microarray Analysis, Adenovirus Infections, Human - diagnosis - virology, 3. Good health, PCR, Female, Human - diagnosis - virology

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/20071220
http://hdl.handle.net/10722/143464

Impact of genotype-first diagnosis: the detection of microdeletion and microduplication syndromes with cancer predisposition by aCGH

Συγγραφείς: Adams, Sara Anne, Coppinger, Justine, Saitta, Sulagna C, Stroud, Tracy, Kandamurugu, Manikum, Fan, Zheng, Ballif, Blake C, Shaffer, Lisa G, Bejjani, Bassem A

Πηγή: Genetics in Medicine. 11:314-322

Θεματικοί όροι: Comparative Genomic Hybridization, Sequence Deletion - genetics, Developmental Disabilities, Microarray Analysis, Comparative Genomic Hybridization - methods, Comparative Genomic Hybridization - statistics & numerical data, Congenital Abnormalities, 3. Good health, Congenital Abnormalities - genetics, Child, Preschool, Gene Duplication, Karyotyping, Neoplasms, Microarray Analysis - methods, Genetic Predisposition to Disease - genetics, Humans, Genetic Predisposition to Disease, Neoplasms - genetics, Child, Preschool, Developmental Disabilities - genetics, Sequence Deletion

Σύνδεσμος πρόσβασης: https://www.nature.com/articles/gim200943.pdf
https://pubmed.ncbi.nlm.nih.gov/19365269