Pathology-oriented multiplexing enables integrative disease mapping

Authors: Malte Kuehl, Yusuke Okabayashi, Milagros N. Wong, Lukas Gernhold, Gabriele Gut, Nico Kaiser, Maria Schwerk, Stefanie K. Gräfe, Frank Y. Ma, Jovan Tanevski, Philipp S. L. Schäfer, Sam Mezher, Jacobo Sarabia del Castillo, Thiago Goldbeck-Strieder, Olga Zolotareva, Michael Hartung, Fernando M. Delgado Chaves, Lukas Klinkert, Ann-Christin Gnirck, Marc Spehr, David Fleck, Mehdi Joodaki, Victor Parra, Mina Shaigan, Martin Diebold, Marco Prinz, Jennifer Kranz, Johan M. Kux, Fabian Braun, Oliver Kretz, Hui Wu, Florian Grahammer, Sven Heins, Marina Zimmermann, Fabian Haas, Dominik Kylies, Nicola Wanner, Jan Czogalla, Bernhard Dumoulin, Nikolay Zolotarev, Maja Lindenmeyer, Pall Karlson, Jens R. Nyengaard, Marcial Sebode, Sören Weidemann, Thorsten Wiech, Hermann-Josef Groene, Nicola M. Tomas, Catherine Meyer-Schwesinger, Christoph Kuppe, Rafael Kramann, Alexandre Karras, Patrick Bruneval, Pierre-Louis Tharaux, Diego Pastene, Benito Yard, Jennifer A. Schaub, Phillip J. McCown, Laura Pyle, Ye Ji Choi, Takashi Yokoo, Jan Baumbach, Pablo J. Sáez, Ivan Costa, Jan-Eric Turner, Jeffrey B. Hodgin, Julio Saez-Rodriguez, Tobias B. Huber, Petter Bjornstad, Matthias Kretzler, Olivia Lenoir, David J. Nikolic-Paterson, Lucas Pelkmans, Stefan Bonn, Victor G. Puelles

Source: Kuehl, M, Okabayashi, Y, Wong, M N, Gernhold, L, Gut, G, Kaiser, N, Schwerk, M, Gräfe, S K, Ma, F Y, Tanevski, J, Schäfer, P S L, Mezher, S, Sarabia Del Castillo, J, Goldbeck-Strieder, T, Zolotareva, O, Hartung, M, Delgado Chaves, F M, Klinkert, L, Gnirck, A-C, Spehr, M, Fleck, D, Joodaki, M, Parra, V, Shaigan, M, Diebold, M, Prinz, M, Kranz, J, Kux, J M, Braun, F, Kretz, O, Wu, H, Grahammer, F, Heins, S, Zimmermann, M, Haas, F, Kylies, D, Wanner, N, Czogalla, J, Dumoulin, B, Zolotarev, N, Lindenmeyer, M, Karlson, P, Nyengaard, J R, Sebode, M, Weidemann, S, Wiech, T, Groene, H-J, Tomas, N M, Meyer-Schwesinger, C, Kuppe, C, Kramann, R, Karras, A, Bruneval, P, Tharaux, P-L, Pastene, D, Yard, B, Schaub, J A, McCown, P J, Pyle, L, Choi, Y J, Yokoo, T, Baumbach, J, Sáez, P J, Costa, I, Turner, J-E, Hodgin, J B, Saez-Rodriguez, J, Huber, T B, Bjornstad, P, Kretzler, M, Lenoir, O, Nikolic-Paterson, D J, Pelkmans, L, Bonn, S & Puelles, V G 2025, 'Pathology-oriented multiplexing enables integrative disease mapping', Nature, vol. 644, no. 8076, pp. 516-526. https://doi.org/10.1038/s41586-025-09225-2

Subject Terms: Diabetic Nephropathies/pathology, Male, Mice, Kidney/pathology, Image Processing, Computer-Assisted/methods, Biopsy, Humans, Animals, Female, Antibodies/immunology, Proof of Concept Study, Software

File Description: application/pdf

Development of image analysis tool to evaluate Langerhans cell migration after exposure to isothiazolinones

Authors: Oltramare, C, Burri, O, Hopf, NB, Jaccoud, S, Seitz, A, Applegate, LA, Hirt-Burri, N, Berthet, A

Source: Arch Toxicol
Archives of toxicology, vol. 99, no. 6, pp. 2463-2477

Subject Terms: Immunotoxicology, Langerhans Cells/drug effects, Humans, Cell Movement/drug effects, Thiazoles/toxicity, Dermatitis, Allergic Contact/etiology, Dermatitis, Allergic Contact/pathology, Skin/drug effects, Skin/cytology, Image Processing, Computer-Assisted/methods, Machine Learning, Software, Allergic contact dermatitis, DAB-staining CD1a immunohistochemistry, In vitro model, QuPath software, Skin histology, Skin sensitization

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/40080107
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_F482B4531F1F7
https://serval.unil.ch/notice/serval:BIB_F482B4531F1F
https://serval.unil.ch/resource/serval:BIB_F482B4531F1F.P001/REF.pdf

Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition: Part 2—Ex vivo imaging: Added value and acquisition

Authors: Schilling, Kurt G., Grussu, Francesco, Ianus, Andrada, Hansen, Brian, Howard, Amy F. D., Barrett, Rachel L. C., Aggarwal, Manisha, Michielse, Stijn, Nasrallah, Fatima, Syeda, Warda, Wang, Nian, Veraart, Jelle, Roebroeck, Alard, Bagdasarian, Andrew F., Eichner, Cornelius, Sepehrband, Farshid, Zimmermann, Jan, Soustelle, Lucas, Bowman, Christien, Tendler, Benjamin C., Hertanu, Andreea, Jeurissen, Ben, Verhoye, Marleen, Frydman, Lucio, van de Looij, Yohan, Hike, David, Dunn, Jeff F., Miller, Karla, Landman, Bennett A., Shemesh, Noam, Anderson, Adam, McKinnon, Emilie, Farquharson, Shawna, Dell'Acqua, Flavio, Pierpaoli, Carlo, Drobnjak, Ivana, Leemans, Alexander, Harkins, Kevin D., Descoteaux, Maxime, Xu, Duan, Huang, Hao, Santin, Mathieu D., Grant, Samuel C., Obenaus, Andre, Kim, Gene S., Wu, Dan, Le Bihan, Denis, Blackband, Stephen J., Ciobanu, Luisa, Fieremans, Els, Bai, Ruiliang, Leergaard, Trygve B., Zhang, Jiangyang, Dyrby, Tim B., Johnson, G. Allan, Cohen‐Adad, Julien, Budde, Matthew D., Jelescu, Ileana O.

Contributors: Institut Català de la Salut, [Schilling KG] Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, Tennessee USA. Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, Tennessee USA. [Grussu F] Radiomics Group, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. Queen Square MS Centre, Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK. [Ianus A] Champalimaud Research, Champalimaud Foundation, Lisbon, Portugal. School of Biomedical Engineering and Imaging Sciences, King’s College London, London. [Hansen B] Center of Functionally Integrative Neuroscience, Aarhus University, Aarhus, Denmark. [Howard AFD] Department of Bioengineering, Imperial College London, London, UK. FMRIB Centre, Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK. [Barrett RLC] Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. NatBrainLab, Department of Forensics and Neurodevelopmental Sciences, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK, Vall d'Hebron Barcelona Hospital Campus, Beeldverwerking ISI, Brain, Cancer

Source: Magn Reson Med
Scientia
Scientia. Dipòsit d'Informació Digital del Departament de Salut
instname
Magnetic resonance in medicine, vol. 93, no. 6, pp. 2535-2560
Magnetic resonance in medicine
Schilling, K G, Grussu, F, Ianus, A, Hansen, B, Howard, A FD, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Acqua, F D, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Bihan, D L, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Jelescu, I O 2025, 'Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 2--Ex vivo imaging: added value and acquisition', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535-2560. https://doi.org/10.1002/mrm.30435
Schilling, K G, Grussu, F, Ianus, A, Hansen, B, Howard, A F D, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Dell'Acqua, F, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Le Bihan, D, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Jelescu, I O 2025, 'Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI : Part 2-Ex vivo imaging: Added value and acquisition', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535-2560. https://doi.org/10.1002/mrm.30435

Subject Terms: q-bio.TO, TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética::imagen de resonancia magnética de difusión, tractography, Review, physics.med-ph, Signal-To-Noise Ratio, Diffusion Magnetic Resonance Imaging/methods, Brain/diagnostic imaging, Animals, Image Processing, Computer-Assisted/methods, Humans, Reproducibility of Results, acquisition, best practices, diffusion MRI, diffusion tensor, ex vivo, microstructure, open science, preclinical, processing, 0302 clinical medicine, TENSOR MICROSCOPY, Image Processing, Computer-Assisted, ANATOMÍA::sistema nervioso::sistema nervioso central::encéfalo, Tissues and Organs (q-bio.TO), IN-VIVO, T-2 RELAXATION, MOUSE-BRAIN, Preclinical and Clinical Imaging, Animals de laboratori, Otros calificadores::Otros calificadores::Otros calificadores::/diagnóstico por imagen, Other subheadings::Other subheadings::Other subheadings::/diagnostic imaging, Brain, WATER DIFFUSION, ORGANISMOS::Eukaryota::animales, ANATOMY::Nervous System::Central Nervous System::Brain, AXON DIAMETER, WHITE-MATTER, FOS: Physical sciences, WAXHOLM SPACE ATLAS, 03 medical and health sciences, MAGNETIC-RESONANCE MICROSCOPY, Imatges - Processament, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging::Diffusion Magnetic Resonance Imaging, Journal Article, POSTMORTEM HUMAN BRAINS, Computer. Automation, ORGANISMS::Eukaryota::Animals, INFORMATION SCIENCE::Information Science::Computing Methodologies::Image Processing, Computer-Assisted, Quantitative Biology - Tissues and Organs, Cervell - Imatgeria, Physics - Medical Physics, CIENCIA DE LA INFORMACIÓN::Ciencias de la información::metodologías computacionales::procesamiento de imágenes asistido por ordenador, Diffusion Magnetic Resonance Imaging, FOS: Biological sciences, Imatgeria per ressonància magnètica, Human medicine, Medical Physics (physics.med-ph)

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/40035293
http://arxiv.org/abs/2209.13371
http://hdl.handle.net/11351/13141
https://cris.maastrichtuniversity.nl/en/publications/91464b07-cf1e-40bc-a5dd-a22d3343ebe3
https://doi.org/10.1002/mrm.30435
https://dspace.library.uu.nl/handle/1874/461037
https://publications.polymtl.ca/63294/
https://doi.org/10.1002/mrm.30435
https://serval.unil.ch/resource/serval:BIB_C2EC208677CB.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_C2EC208677CB8
https://serval.unil.ch/notice/serval:BIB_C2EC208677CB
https://repository.uantwerpen.be/docstore/d:irua:28144
https://hdl.handle.net/10067/2133410151162165141
https://pure.au.dk/portal/en/publications/d359c3f3-302e-444f-8900-7ab30e23428a
https://kclpure.kcl.ac.uk/portal/en/publications/e7a2b61b-b881-4448-9907-6245f64a1348
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http://www.scopus.com/inward/record.url?scp=105001807462&partnerID=8YFLogxK
https://doi.org/10.1002/mrm.30435
https://pure.au.dk/ws/files/420524020/2209.13371v3.pdf

Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography: Part 3-Ex vivo imaging: Data processing, comparisons with microscopy, and tractography

Authors: Kurt G. Schilling, Amy F. D. Howard, Francesco Grussu, Andrada Ianus, Brian Hansen, Rachel L. C. Barrett, Manisha Aggarwal, Stijn Michielse, Fatima Nasrallah, Warda Syeda, Nian Wang, Jelle Veraart, Alard Roebroeck, Andrew F. Bagdasarian, Cornelius Eichner, Farshid Sepehrband, Jan Zimmermann, Lucas Soustelle, Christien Bowman, Benjamin C. Tendler, Andreea Hertanu, Ben Jeurissen, Marleen Verhoye, Lucio Frydman, Yohan van de Looij, David Hike, Jeff F. Dunn, Karla Miller, Bennett A. Landman, Noam Shemesh, Adam Anderson, Emilie McKinnon, Shawna Farquharson, Flavio Dell'Acqua, Carlo Pierpaoli, Ivana Drobnjak, Alexander Leemans, Kevin D. Harkins, Maxime Descoteaux, Duan Xu, Hao Huang, Mathieu D. Santin, Samuel C. Grant, Andre Obenaus, Gene S. Kim, Dan Wu, Denis Le Bihan, Stephen J. Blackband, Luisa Ciobanu, Els Fieremans, Ruiliang Bai, Trygve B. Leergaard, Jiangyang Zhang, Tim B. Dyrby, G. Allan Johnson, Julien Cohen‐Adad, Matthew D. Budde, Ileana O. Jelescu

Contributors: Institut Català de la Salut, [Schilling KG] Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, Tennessee USA. Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, Tennessee USA. [Howard AFD] Department of Bioengineering, Imperial College London, London, UK. FMRIB Centre, Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK. [Grussu F] Radiomics Group, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. Queen Square MS Centre, Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK. [Ianus A] School of Biomedical Engineering and Imaging Sciences, King’s College London, London, England. Champalimaud Research, Champalimaud Foundation, Lisbon, Portugal. [Hansen B] Center of Functionally Integrative Neuroscience, Aarhus University, Aarhus, Denmark. [Barrett RLC] Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. NatBrainLab, Department of Forensics and Neurodevelopmental Sciences, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK, Vall d'Hebron Barcelona Hospital Campus, Beeldverwerking ISI, Brain, Cancer

Source: Magn Reson Med
Scientia
Scientia. Dipòsit d'Informació Digital del Departament de Salut
instname
Magnetic resonance in medicine, vol. 93, no. 6, pp. 2561-2582
Magnetic resonance in medicine
Schilling, K G, Howard, A FD, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Acqua, F D, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Bihan, D L, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Jelescu, I O 2025, ' Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 3--Ex vivo imaging: data processing, comparisons with microscopy, and tractography ', Magnetic Resonance in Medicine .
Schilling, K G, Howard, A F D, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Dell'Acqua, F, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Le Bihan, D, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Jelescu, I O 2025, 'Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 3-Ex vivo imaging: Data processing, comparisons with microscopy, and tractography', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561-2582. https://doi.org/10.1002/mrm.30424
Schilling, K G, Howard, A F D, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Dell'Acqua, F, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Le Bihan, D, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Jelescu, I O 2025, 'Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561-2582. https://doi.org/10.1002/mrm.30424

Subject Terms: TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::neuroimágenes::imagen con tensor de difusión, TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética::imagen de resonancia magnética de difusión, TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::microscopía, diffusion tensor, microstructure, tractography, FOS: Physical sciences, physics.med-ph, Signal-To-Noise Ratio, diffusion MRI, ANATOMICAL ACCURACY, MAGNETIC-RESONANCE MICROSCOPY, Imatges - Processament, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging::Diffusion Magnetic Resonance Imaging, open science, preclinical, AXON DIAMETER DISTRIBUTION, ORIENTATION DISPERSION, Image Processing, Computer-Assisted, best practices, Animals, Humans, NERVOUS-TISSUE, Computer. Automation, Microscopy, HISTOLOGICAL VALIDATION, Diffusion Magnetic Resonance Imaging/methods, Brain/diagnostic imaging, Image Processing, Computer-Assisted/methods, Diffusion Tensor Imaging/methods, Microscopy/methods, acquisition, ex vivo, processing, Preclinical and Clinical Imaging, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Neuroimaging::Diffusion Tensor Imaging, INFORMATION SCIENCE::Information Science::Computing Methodologies::Image Processing, Computer-Assisted, Brain, Physics - Medical Physics, Microscòpia clínica, CIENCIA DE LA INFORMACIÓN::Ciencias de la información::metodologías computacionales::procesamiento de imágenes asistido por ordenador, Diffusion Magnetic Resonance Imaging, Diffusion Tensor Imaging, Radiology Nuclear Medicine and imaging, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Microscopy, Imatgeria per ressonància magnètica, STRUCTURE TENSOR ANALYSIS, Human medicine, Medical Physics (physics.med-ph), SPINAL-CORD, LIGHT-MICROSCOPY, WHITE-MATTER

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/40008460
http://arxiv.org/abs/2411.05021
http://hdl.handle.net/11351/12974
https://dspace.library.uu.nl/handle/1874/460842
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_AA99E2683A183
https://serval.unil.ch/notice/serval:BIB_AA99E2683A18
https://serval.unil.ch/resource/serval:BIB_AA99E2683A18.P001/REF.pdf
https://hdl.handle.net/10067/2133390151162165141
https://repository.uantwerpen.be/docstore/d:irua:28142
https://pure.au.dk/portal/en/publications/303e2cdf-f5f6-4fd0-a953-d79f6520abd7
https://kclpure.kcl.ac.uk/portal/en/publications/d11e4490-9c34-4760-86f3-92df6316adfe
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https://pure.au.dk/portal/en/publications/303e2cdf-f5f6-4fd0-a953-d79f6520abd7
https://doi.org/10.1002/mrm.30424

Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small‐animal imaging

Authors: Jelescu, Ileana O., Grussu, Francesco, Ianus, Andrada, Hansen, Brian, Barrett, Rachel L. C., Aggarwal, Manisha, Michielse, Stijn, Nasrallah, Fatima, Syeda, Warda, Wang, Nian, Veraart, Jelle, Roebroeck, Alard, Bagdasarian, Andrew F., Eichner, Cornelius, Sepehrband, Farshid, Zimmermann, Jan, Soustelle, Lucas, Bowman, Christien, Tendler, Benjamin C., Hertanu, Andreea, Jeurissen, Ben, Verhoye, Marleen, Frydman, Lucio, van de Looij, Yohan, Hike, David, Dunn, Jeff F., Miller, Karla, Landman, Bennett A., Shemesh, Noam, Anderson, Adam, McKinnon, Emilie, Farquharson, Shawna, Dell'Acqua, Flavio, Pierpaoli, Carlo, Drobnjak, Ivana, Leemans, Alexander, Harkins, Kevin D., Descoteaux, Maxime, Xu, Duan, Huang, Hao, Santin, Mathieu D., Grant, Samuel C., Obenaus, Andre, Kim, Gene S., Wu, Dan, Le Bihan, Denis, Blackband, Stephen J., Ciobanu, Luisa, Fieremans, Els, Bai, Ruiliang, Leergaard, Trygve B., Zhang, Jiangyang, Dyrby, Tim B., Johnson, G. Allan, Cohen‐Adad, Julien, Budde, Matthew D., Schilling, Kurt G.

Contributors: Institut Català de la Salut, [Jelescu IO] Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland. CIBM Center for Biomedical Imaging, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland. [Grussu F] Radiomics Group, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. Queen Square MS Centre, Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK. [Ianus A] Champalimaud Research, Champalimaud Foundation, Lisbon, Portugal. School of Biomedical Engineering and Imaging Sciences, King’s College London, London, UK. [Hansen B] Center of Functionally Integrative Neuroscience, Aarhus University, Aarhus, Denmark. [Barrett RLC] Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. NatBrainLab, Department of Forensics and Neurodevelopmental Sciences, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, UK. [Aggarwal M] Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA, Vall d'Hebron Barcelona Hospital Campus, Beeldverwerking ISI, Brain, Cancer

Source: Magn Reson Med
Scientia
Scientia. Dipòsit d'Informació Digital del Departament de Salut
instname
Magnetic resonance in medicine, vol. 93, no. 6, pp. 2507-2534
Magnetic resonance in medicine
Jelescu, I O, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Acqua, F D, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Bihan, D L, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Schilling, K G 2025, ' Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI : Part 1--In vivo small-animal imaging ', Magnetic Resonance in Medicine .
Jelescu, I O, Grussu, F, Ianus, A, Hansen, B, Barrett, R L C, Aggarwal, M, Michielse, S, Nasrallah, F, Syeda, W, Wang, N, Veraart, J, Roebroeck, A, Bagdasarian, A F, Eichner, C, Sepehrband, F, Zimmermann, J, Soustelle, L, Bowman, C, Tendler, B C, Hertanu, A, Jeurissen, B, Verhoye, M, Frydman, L, van de Looij, Y, Hike, D, Dunn, J F, Miller, K, Landman, B A, Shemesh, N, Anderson, A, McKinnon, E, Farquharson, S, Dell'Acqua, F, Pierpaoli, C, Drobnjak, I, Leemans, A, Harkins, K D, Descoteaux, M, Xu, D, Huang, H, Santin, M D, Grant, S C, Obenaus, A, Kim, G S, Wu, D, Le Bihan, D, Blackband, S J, Ciobanu, L, Fieremans, E, Bai, R, Leergaard, T B, Zhang, J, Dyrby, T B, Johnson, G A, Cohen-Adad, J, Budde, M D & Schilling, K G 2025, 'Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI : Part 1: In vivo small-animal imaging', Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507-2534. https://doi.org/10.1002/mrm.30429
Magnetic Resonance in Medicine

Subject Terms: small animal, q-bio.TO, TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética::imagen de resonancia magnética de difusión, Image Processing, Computer-Assisted/methods, diffusion tensor, microstructure, tractography, FOS: Physical sciences, Review, physics.med-ph, ORGANISMOS::Eukaryota::animales::Chordata::vertebrados::mamíferos::Eutheria::Rodentia::Muridae::Murinae::ratones, diffusion MRI, Mice, 03 medical and health sciences, 0302 clinical medicine, Imatges - Processament, ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging::Diffusion Magnetic Resonance Imaging, open science, preclinical, Animals, Diffusion Magnetic Resonance Imaging/methods, Brain/diagnostic imaging, Software, Reproducibility of Results, acquisition, best practices, processing, Journal Article, Image Processing, Computer-Assisted, Tissues and Organs (q-bio.TO), Rates (Animals de laboratori), Computer. Automation, Preclinical and Clinical Imaging, INFORMATION SCIENCE::Information Science::Computing Methodologies::Image Processing, Computer-Assisted, Brain, Quantitative Biology - Tissues and Organs, Physics - Medical Physics, CIENCIA DE LA INFORMACIÓN::Ciencias de la información::metodologías computacionales::procesamiento de imágenes asistido por ordenador, Diffusion Magnetic Resonance Imaging, FOS: Biological sciences, Imatgeria per ressonància magnètica, Human medicine, Medical Physics (physics.med-ph), ORGANISMS::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Eutheria::Rodentia::Muridae::Murinae::Mice

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/40008568
http://arxiv.org/abs/2209.12994
http://hdl.handle.net/11351/12973
https://dspace.library.uu.nl/handle/1874/461039
https://serval.unil.ch/resource/serval:BIB_7D54D697DFE6.P001/REF.pdf
https://serval.unil.ch/notice/serval:BIB_7D54D697DFE6
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_7D54D697DFE68
https://repository.uantwerpen.be/docstore/d:irua:28141
https://hdl.handle.net/10067/2133370151162165141
https://pure.au.dk/portal/en/publications/336f06f8-b082-4fd9-a2de-760051ac1ff7

A noise-robust post-processing pipeline for accelerated phase-cycled 23Na Multi-Quantum Coherences MRI

Authors: Licht, Christian, Ilicak, Efe, Boada, Fernando, Guye, Maxime, Zöllner, Frank, Schad, Lothar, Rapacchi, Stanislas

Contributors: Kober, Frank

Source: Z Med Phys
Zeitschrift fur medizinische Physik, vol. 35, no. 1, pp. 98-108

Subject Terms: Original Paper, Single and triple quantum imaging, Sodium, Brain, Neuroimaging, Signal-To-Noise Ratio, Magnetic Resonance Imaging, Sodium multi-quantum coherences, Low-rank, Dynamic mode decomposition, [SDV.IB.IMA] Life Sciences [q-bio]/Bioengineering/Imaging, Sodium MRI, Image Processing, Computer-Assisted, Humans, Magnetic Resonance Imaging/methods, Brain/diagnostic imaging, Algorithms, Image Processing, Computer-Assisted/methods, Sodium Isotopes

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Access URL: https://pubmed.ncbi.nlm.nih.gov/39843306
https://serval.unil.ch/resource/serval:BIB_27DCDCBE9483.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_27DCDCBE94835
https://serval.unil.ch/notice/serval:BIB_27DCDCBE9483
https://amu.hal.science/hal-04998085v1/document
https://doi.org/10.1016/j.zemedi.2024.12.004
https://amu.hal.science/hal-04998085v1

Respiratory motion-corrected T1 mapping of the abdomen

Authors: Jana Huiyue Zhang, Tom Neumann, Tobias Schaeffter, Christoph Kolbitsch, Kirsten Miriam Kerkering

Source: MAGMA
Magma, vol. 37, no. 4, pp. 637-649

Subject Terms: Adult, Male, Respiration, Movement, Reproducibility of Results, Kidney, Magnetic Resonance Imaging, Healthy Volunteers, Motion, 03 medical and health sciences, Movement/physiology [MeSH], Algorithms [MeSH], Female [MeSH], Adult [MeSH], Humans [MeSH], Respiratory motion correction, Motion [MeSH], Basic Science - Parametric mapping and quantitative MRI, Artifacts [MeSH], Kidney/diagnostic imaging [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Respiration [MeSH], Male [MeSH], Reproducibility of Results [MeSH], Image-based navigator, Healthy Volunteers [MeSH], Abdomen/diagnostic imaging [MeSH], Magnetic Resonance Imaging/methods [MeSH], Research Article, Abdominal T1 mapping, Liver/diagnostic imaging [MeSH], 0302 clinical medicine, Liver, Abdomen, Image Processing, Computer-Assisted, Humans, Female, Artifacts, Abdomen/diagnostic imaging, Magnetic Resonance Imaging/methods, Image Processing, Computer-Assisted/methods, Algorithms, Liver/diagnostic imaging, Movement/physiology, Kidney/diagnostic imaging

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Access URL: https://pubmed.ncbi.nlm.nih.gov/39133420
https://serval.unil.ch/notice/serval:BIB_6E7C6B57060A
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_6E7C6B57060A3
https://serval.unil.ch/resource/serval:BIB_6E7C6B57060A.P001/REF.pdf
https://repository.publisso.de/resource/frl:6521831

Improved phosphorus MRSI acquisition through compressed sensing acceleration combined with low-rank reconstruction

Authors: Julien Songeon, François Lazeyras, Thomas Agius, Oscar Dabrowski, Raphael Ruttimann, Christian Toso, Alban Longchamp, Antoine Klauser, Sebastien Courvoisier

Source: MAGMA
Magma, vol. 38, no. 2, pp. 161-173

Subject Terms: Adult, Male, Humans, Signal-To-Noise Ratio, Phosphorus/chemistry, Brain/diagnostic imaging, Brain/metabolism, Image Processing, Computer-Assisted/methods, Algorithms, Magnetic Resonance Spectroscopy/methods, Kidney/diagnostic imaging, Kidney/metabolism, Magnetic Resonance Imaging/methods, Retrospective Studies, Data Compression/methods, Healthy Volunteers, Phantoms, Imaging, Acceleration, Compressed sensing, Low rank, Phosphorus magnetic resonance spectroscopic imaging (31P-MRSI), Regularization, Magnetic Resonance Spectroscopy, Brain, Phosphorus, Kidney, Data Compression, Magnetic Resonance Imaging, 03 medical and health sciences, 0302 clinical medicine, Image Processing, Computer-Assisted, Research Article

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39729226
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_FADBE8F854E97
https://serval.unil.ch/resource/serval:BIB_FADBE8F854E9.P001/REF.pdf
https://serval.unil.ch/notice/serval:BIB_FADBE8F854E9

A flexible framework for the design and optimization of water‐excitation RF pulses using B‐spline interpolation

Authors: Xavier Sieber, Ludovica Romanin, Jessica A. M. Bastiaansen, Christopher W. Roy, Jérôme Yerly, Daniel Wenz, Jonas Richiardi, Matthias Stuber, Ruud B. van Heeswijk

Source: Magnetic resonance in medicine, vol. 93, no. 5, pp. 1896-1910

Subject Terms: Male, Adult, Radio Waves, Phantoms, Imaging, Water, Heart, Signal-To-Noise Ratio, Magnetic Resonance Imaging, Coronary Vessels, Healthy Volunteers, Humans, Algorithms, Magnetic Resonance Imaging/methods, Water/chemistry, Adipose Tissue/diagnostic imaging, Image Processing, Computer-Assisted/methods, Bone Marrow/diagnostic imaging, Female, Knee/diagnostic imaging, Heart/diagnostic imaging, Coronary Vessels/diagnostic imaging, Computer Simulation, 5D whole‐heart cardiovascular MRI, RF pulse design, WE pulse, fat suppression, free‐running, free‐running cardiac imaging, numerical optimization, water‐excitation, 03 medical and health sciences, 0302 clinical medicine, Adipose Tissue, Bone Marrow, Image Processing, Computer-Assisted, Knee

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Access URL: https://pubmed.ncbi.nlm.nih.gov/39652471
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_A7332DACE2162
https://serval.unil.ch/notice/serval:BIB_A7332DACE216
https://serval.unil.ch/resource/serval:BIB_A7332DACE216.P001/REF.pdf

Characterization of Polarimetric Properties in Various Brain Tumor Types Using Wide-Field Imaging Mueller Polarimetry

Authors: Éléa Gros, Omar Rodríguez-Núñez, Leonard Felger, Stefano Moriconi, Richard McKinley, Angelo Pierangelo, Tatiana Novikova, Erik Vassella, Philippe Schucht, Ekkehard Hewer, Theoni Maragkou

Source: IEEE transactions on medical imaging, vol. 43, no. 12, pp. 4120-4132
Gros, Romane; Rodríguez-Núñez, Omar; Felger, Leonard; Moriconi, Stefano; McKinley, Richard; Pierangelo, Angelo; Novikova, Tatiana; Vassella, Erik; Schucht, Philippe; Hewer, Ekkehard; Maragkou, Theoni (2024). Characterization of Polarimetric Properties in Various Brain Tumor Types Using Wide-Field Imaging Mueller Polarimetry. IEEE Transactions on Medical Imaging, p. 1. 10.1109/TMI.2024.3413288 <http://dx.doi.org/10.1109/TMI.2024.3413288>

Subject Terms: FOS: Physical sciences, Brain Tumors, 610 Medicine & health, Optical imaging, Imaging, Image processing, Polarimetry, Image Processing, Computer-Assisted, Humans, Tissues and Organs (q-bio.TO), Neuro-Oncology, Neuropathology, Tumors, Brain Neoplasms, Brain Neoplasms/diagnostic imaging, Algorithms, Glioma/diagnostic imaging, Glioma/pathology, Brain/diagnostic imaging, Image Processing, Computer-Assisted/methods, Mueller Polarimetry, Brain, Quantitative Biology - Tissues and Organs, Glioma, Physics - Medical Physics, Optical polarization, FOS: Biological sciences, 570 Life sciences, biology, Medical Physics (physics.med-ph), Heterojunction bipolar transistors

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38865222
http://arxiv.org/abs/2403.09561
https://serval.unil.ch/notice/serval:BIB_1ADF9D0693D1
https://serval.unil.ch/resource/serval:BIB_1ADF9D0693D1.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_1ADF9D0693D17
https://boris.unibe.ch/199491/

Dopaminergic PET to SPECT domain adaptation: a cycle GAN translation approach

Authors: Leonor Lopes, Fangyang Jiao, Song Xue, Thomas Pyka, Korbinian Krieger, Jingjie Ge, Qian Xu, Rachid Fahmi, Bruce Spottiswoode, Ahmed Soliman, Ralph Buchert, Matthias Brendel, Jimin Hong, Yihui Guan, Claudio L. A. Bassetti, Axel Rominger, Chuantao Zuo, Kuangyu Shi, Ping Wu

Source: Eur J Nucl Med Mol Imaging
European journal of nuclear medicine and molecular imaging 52(3), 851-863 (2025). doi:10.1007/s00259-024-06961-x

Subject Terms: Male, Dopamine, Female [MeSH], Parkinson Disease/metabolism [MeSH], Domain adaptation, Aged [MeSH], Deep Learning [MeSH], Humans [MeSH], Tomography, Emission-Computed, Single-Photon/methods [MeSH], Cycle GAN, Middle Aged [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Original Article, Positron-Emission Tomography/methods [MeSH], CFT PET, FP-CIT SPECT, Parkinson Disease/diagnostic imaging [MeSH], Dopamine/metabolism [MeSH], Male [MeSH], Dopamine Plasma Membrane Transport Proteins/metabolism [MeSH], Tropanes [MeSH], Parkinson's disease, metabolism [Parkinson Disease], 03 medical and health sciences, Deep Learning, 0302 clinical medicine, Parkinsonian Disorders, methods [Image Processing, Computer-Assisted], diagnostic imaging [Parkinson Disease], Image Processing, Computer-Assisted, Humans, ddc:610, metabolism [Dopamine], Aged, Tomography, Emission-Computed, Single-Photon, Dopamine Plasma Membrane Transport Proteins, methods [Positron-Emission Tomography], Parkinson Disease, Middle Aged, ddc, Positron-Emission Tomography, metabolism [Dopamine Plasma Membrane Transport Proteins], Female, methods [Tomography, Emission-Computed, Single-Photon], 2-carbomethoxy-8-(3-fluoropropyl)-3-(4-iodophenyl)tropane, Tropanes

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39557690
https://pub.dzne.de/record/276157
https://repository.publisso.de/resource/frl:6522619
https://epub.ub.uni-muenchen.de/123330/
https://mediatum.ub.tum.de/1769830

Stitcher: A Surface Reconstruction Tool for Highly Gyrified Brains

Authors: Heitor Mynssen, Kamilla Avelino-de-Souza, Khallil Chaim, Vanessa Lanes Ribeiro, Nina Patzke, Bruno Mota

Source: Neuroinformatics

Subject Terms: Cerebral Cortex, Imaging, Three-Dimensional, Research, Dolphins, Image Processing, Computer-Assisted, Animals, Brain, Cerebral Cortex/anatomy, Brain/diagnostic imaging [MeSH], Cetaceans, Sea Lions [MeSH], Animals [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Brain/anatomy, Cerebral Cortex/diagnostic imaging [MeSH], Surface reconstruction, Magnetic resonance imaging, Magnetic Resonance Imaging/methods [MeSH], Imaging, Three-Dimensional/methods [MeSH], Dolphins/anatomy, Cortical reconstruction, Magnetic Resonance Imaging, Sea Lions

Access URL: https://pubmed.ncbi.nlm.nih.gov/39387991
https://repository.publisso.de/resource/frl:6502614

High on sparsity: Interbin compensation of cardiac motion for improved assessment of left‐ventricular function using 5D whole‐heart MRI

Authors: Jérôme Yerly, Christopher W. Roy, Bastien Milani, Katerina Eyre, Mozedin Javad Raifee, Matthias Stuber

Source: Magn Reson Med
Magnetic resonance in medicine, vol. 93, no. 3, pp. 975-992

Subject Terms: Male, Adult, Humans, Ventricular Function, Left/physiology, Heart/diagnostic imaging, Algorithms, Magnetic Resonance Imaging/methods, Image Processing, Computer-Assisted/methods, Motion, Female, Stroke Volume/physiology, Computer Simulation, Reproducibility of Results, Image Interpretation, Computer-Assisted/methods, Heart Ventricles/diagnostic imaging, Healthy Volunteers, 3D radial trajectory, 5D whole‐heart MRI, accuracy, cardiac function, compressed sensing, ejection fraction, free‐running, left ventricle ejection fraction, motion compensation, motion fields, precision, radial MRI, self‐gating, Heart Ventricles, Heart, Stroke Volume, Imaging Methodology, Magnetic Resonance Imaging, Ventricular Function, Left, Image Interpretation, Computer-Assisted, Image Processing, Computer-Assisted

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39385350
https://serval.unil.ch/resource/serval:BIB_716C3BE4D7A2.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_716C3BE4D7A28
https://serval.unil.ch/notice/serval:BIB_716C3BE4D7A2

Self‐gated free‐running 5D whole‐heart MRI using blind source separation for automated cardiac motion extraction

Authors: Isabel Montón Quesada, Augustin C. Ogier, Masaki Ishida, Masafumi Takafuji, Haruno Ito, Hajime Sakuma, Ludovica Romanin, Christopher W. Roy, Milan Prša, Jonas Richiardi, Jérôme Yerly, Matthias Stuber, Ruud B. van Heeswijk

Source: Magn Reson Med
Magnetic resonance in medicine, vol. 93, no. 3, pp. 961-974

Subject Terms: Male, Adult, Heart Defects, Congenital, Principal Component Analysis, Cardiac-Gated Imaging Techniques, Contrast Media, Reproducibility of Results, Heart, Coronary Artery Disease, Middle Aged, Imaging Methodology, Magnetic Resonance Imaging, Electrocardiography, Young Adult, Imaging, Three-Dimensional, Humans, Algorithms, Female, Heart/diagnostic imaging, Magnetic Resonance Imaging/methods, Imaging, Three-Dimensional/methods, Image Processing, Computer-Assisted/methods, Image Interpretation, Computer-Assisted/methods, Heart Defects, Congenital/diagnostic imaging, Coronary Artery Disease/diagnostic imaging, 5D whole‐heart cardiovascular MRI, blind source separation, cardiac motion extraction, free‐running, self‐gating, Image Interpretation, Computer-Assisted, Image Processing, Computer-Assisted

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39385391
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_1881335098A16
https://serval.unil.ch/notice/serval:BIB_1881335098A1
https://serval.unil.ch/resource/serval:BIB_1881335098A1.P001/REF.pdf

EANM position paper on challenges and opportunities of full-ring 360° CZT bone imaging: it’s time to let go of planar whole-body bone imaging

Authors: Richard Graham, David Morland, Sarah Cade, Laetitia Imbert, Emmanouil Panagiotidis, Jens Kurth, Frédéric Paycha, Tim Van den Wyngaert

Source: Eur J Nucl Med Mol Imaging
European journal of nuclear medicine and molecular imaging

Subject Terms: Human medicine, Review Article, 360° SPECT/CT, Tellurium [MeSH], Humans [MeSH], Single Photon Emission Computed Tomography Computed Tomography/methods [MeSH], CZT, Image Processing, Computer-Assisted/methods [MeSH], Whole Body Imaging/methods [MeSH], Cadmium-Zinc-Telluride, Bone and Bones/diagnostic imaging [MeSH], Zinc [MeSH], Cadmium [MeSH], Bone scintigraphy, Nuclear Medicine [MeSH], Ring geometry

Access URL: https://pubmed.ncbi.nlm.nih.gov/39259227
https://repository.uantwerpen.be/docstore/d:irua:26206
https://hdl.handle.net/10067/2094900151162165141
https://repository.publisso.de/resource/frl:6513500

Ouroboros: cross-linking protein expression perturbations and cancer histology imaging with generative-predictive modeling: cross-linking protein expression perturbations and cancer histology imaging with generative-predictive modeling

Authors: Srijay Deshpande, Sokratia Georgaka, Michael Haley, Robert Sellers, James Minshull, Jayakrupakar Nallala, Martin Fergie, Nicholas Stone, Nasir Rajpoot, Syed Murtuza Baker, Mudassar Iqbal, Kevin Couper, Federico Roncaroli, Fayyaz Minhas

Source: Bioinformatics
Deshpande, S, Georgaka, S, Haley, M, Sellers, R, Minshull, J, Nallala, J, Fergie, M, Stone, N, Rajpoot, N, Baker, S M, Iqbal, M, Couper, K, Roncaroli, F & Minhas, F 2024, 'Ouroboros : cross-linking protein expression perturbations and cancer histology imaging with generative-predictive modeling', Bioinformatics (Oxford, England), vol. 40, no. Supplement_2, pp. ii174-ii181. https://doi.org/10.1093/bioinformatics/btae399

Subject Terms: Image Processing, Computer-Assisted/methods, Brain Neoplasms, Image Processing, Computer-Assisted/methods, Image Processing, Computer-Assisted, Digital Health, Humans, Computational Biology, Glioblastoma/metabolism, Computational Biology/methods, Glioblastoma, Brain Neoplasms/metabolism

Access URL: https://pubmed.ncbi.nlm.nih.gov/39230703
https://research.manchester.ac.uk/en/publications/d62fb1d8-c128-4302-8650-a7e47eb66d08
https://doi.org/10.1093/bioinformatics/btae399
https://research.manchester.ac.uk/en/publications/d62fb1d8-c128-4302-8650-a7e47eb66d08
http://www.scopus.com/inward/record.url?scp=85203168010&partnerID=8YFLogxK
https://doi.org/10.1093/bioinformatics/btae399

Parameter optimization for proton density fat fraction quantification in skeletal muscle tissue at 7 T

Authors: Katharina Tkotz, Paula Zeiger, Jannis Hanspach, Claudius S. Mathy, Frederik B. Laun, Michael Uder, Armin M. Nagel, Lena V. Gast

Source: MAGMA

Subject Terms: Adult, Male, Phantoms, Imaging, Reproducibility of Results, Middle Aged, Algorithms [MeSH], Fat–water separation (FWS), Female [MeSH], Muscle, Skeletal/diagnostic imaging [MeSH], Adult [MeSH], Humans [MeSH], Skeletal muscle tissue, Basic Science - Parametric mapping and quantitative MRI, Dixon MRI, Computer Simulation [MeSH], Middle Aged [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Proton density fat fraction (PDFF), Adipose Tissue/diagnostic imaging [MeSH], Male [MeSH], Reproducibility of Results [MeSH], Healthy Volunteers [MeSH], Phantoms, Imaging [MeSH], Magnetic Resonance Imaging/methods [MeSH], Protons [MeSH], 7 Tesla, Research Article, Magnetic Resonance Imaging, Healthy Volunteers, 03 medical and health sciences, 0302 clinical medicine, Adipose Tissue, Image Processing, Computer-Assisted, Humans, Female, Computer Simulation, Protons, Muscle, Skeletal, Algorithms

Access URL: https://pubmed.ncbi.nlm.nih.gov/39105951
https://repository.publisso.de/resource/frl:6503453

Deep learning for accelerated and robust MRI reconstruction

Authors: Reinhard Heckel, Mathews Jacob, Akshay Chaudhari, Or Perlman, Efrat Shimron

Source: MAGMA

Subject Terms: Review, Basic Science - Reconstruction algorithms and artificial intelligence, MRI, Deep learning, Machine learning, Image reconstruction, Brain, Magnetic Resonance Imaging, ddc, 03 medical and health sciences, Deep Learning, 0302 clinical medicine, Algorithms [MeSH], Brain/diagnostic imaging [MeSH], Deep Learning [MeSH], Humans [MeSH], Neural Networks, Computer [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Image Interpretation, Computer-Assisted/methods [MeSH], Magnetic Resonance Imaging/methods [MeSH], Image Interpretation, Computer-Assisted, Image Processing, Computer-Assisted, Humans, Neural Networks, Computer, Algorithms

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39042206
https://repository.publisso.de/resource/frl:6519741
https://mediatum.ub.tum.de/doc/1770735/document.pdf

Quantifizierung von Ki-67 in PitNET ('pituitary neuroendocrine tumors')/Adenomen

Authors: Judith Klein, Kai Saeger, Wolfgang Saeger

Source: Pathologie (Heidelb)

Subject Terms: Digital image analysis, Ki-67-index, PitNET/adenoma, Observer Variation [MeSH], Pituitary Neoplasms/metabolism [MeSH], Pituitary Neoplasms/pathology [MeSH], Ki-67 Antigen/analysis [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Originalien, Male [MeSH], Digitale Bildanalyse, Hypophyse, Neuroendocrine Tumors/pathology [MeSH], Adenoma/pathology [MeSH], Ki-67 Antigen/metabolism [MeSH], Ki-67-Index, Neuroendocrine Tumors/metabolism [MeSH], PitNET/Hypophysenadenome, Female [MeSH], Cell Proliferation [MeSH], Pituitary gland, Adult [MeSH], Humans [MeSH], Middle Aged [MeSH], Proliferation, Adenoma/metabolism [MeSH]

Access URL: https://repository.publisso.de/resource/frl:6516463

Generative Modelling of Cortical Receptor Distributions from Cytoarchitectonic Images in the Macaque Brain

Authors: Nebli, Ahmed, Schiffer, Christian, Niu, Meiqi, Palomero-Gallagher, Nicola, Amunts, Katrin, Dickscheid, Timo

Source: Neuroinformatics
Neuroinformatics 22, 389-402 (2024). doi:10.1007/s12021-024-09673-7

Subject Terms: 0301 basic medicine, Conditional learning, Motor Cortex/cytology [MeSH], Area-wise training, Animals [MeSH], Macaca mulatta [MeSH], Receptors, Neurotransmitter/metabolism [MeSH], Image Processing, Computer-Assisted/methods [MeSH], Generative adversarial networks, Models, Neurological [MeSH], Receptors, Kainic Acid/metabolism [MeSH], Neurotransmitter receptor, Research, Autoradiography, Imaging, Three-Dimensional/methods [MeSH], Motor Cortex/metabolism [MeSH], Models, Neurological, Motor Cortex, Macaca mulatta, Receptors, Neurotransmitter, 03 medical and health sciences, Imaging, Three-Dimensional, 0302 clinical medicine, Receptors, Kainic Acid, Image Processing, Computer-Assisted, Animals

Access URL: https://pubmed.ncbi.nlm.nih.gov/38976151
https://juser.fz-juelich.de/record/1028714
https://repository.publisso.de/resource/frl:6496015