cuHinesBatch: Solving Multiple Hines systems on GPUs Human Brain Project

Συγγραφείς: Valero-Lara, Pedro ¹, Martínez-Perez, Ivan ¹, Peña, Antonio J. ¹, Martorell, Xavier ^{1, 2}, Sirvent, Raül ¹, Labarta, Jesús ^{1, 2}

Πηγή: In Procedia Computer Science 2017 108:566-575

Heuristic Tree-Partition-Based Parallel Method for Biophysically Detailed Neuron Simulation.

Συγγραφείς: Zhang, Yichen, Du, Kai, Huang, Tiejun

Πηγή: Neural Computation; Apr2023, Vol. 35 Issue 4, p627-644, 18p, 3 Diagrams, 2 Charts, 3 Graphs

Θεματικοί όροι: Parallel algorithms, Neurons, Heuristic algorithms, Linear equations, Process capability, Computational neuroscience

Simulating the Behaviour of the Human Brain on NVIDIA GPU: cuHinesBatch & cuThomasBatch implementations

Συγγραφείς: Martínez Pérez, Ivan

Συνεισφορές: Peña Monferrer, Antonio José, Valero Lara, Pedro

Θεματικοί όροι: Àrees temàtiques de la UPC::Informàtica, Parallel processing (Electronic computers), Multiprocessors, Neurona, Algoritme de Hines, GPUs, Multiprocessador, Sistema Tri-diagonal Lineal, Escalabilitat, Algoritme de Thomas, PCR, CR, Processament Paral·lel, cuSPARSE, CUDA, Human Brain, Neuron, Hines Algorithm, Parallel Computing, Multicore, Tridiagonal Linear Systems, Scalability, Thomas Algorithm, Parallel Processing, Processament en paral·lel (Ordinadors), Multiprocessadors

Περιγραφή αρχείου: application/pdf

Relation: https://hdl.handle.net/2117/117810; 131442

Διαθεσιμότητα: https://hdl.handle.net/2117/117810

Simulating the Behaviour of the Human Brain on NVIDIA GPU: cuHinesBatch & cuThomasBatch implementations

Συγγραφείς: Peña Monferrer, Antonio Jose, Valero Lara, Pedro, Martínez Pérez, Ivan

Όροι ευρετηρίου: Àrees temàtiques de la UPC::Informàtica, Parallel processing (Electronic computers), Multiprocessors, Neurona, Algoritme de Hines, GPUs, Multiprocessador, Sistema Tri-diagonal Lineal, Escalabilitat, Algoritme de Thomas, PCR, CR, Processament Paral·lel, cuSPARSE, CUDA, Human Brain, Neuron, Hines Algorithm, Parallel Computing, Multicore, Tridiagonal Linear Systems, Scalability, Thomas Algorithm, Parallel Processing, Processament en paral·lel (Ordinadors), Multiprocessadors, Master thesis

Σύνδεσμος: https://hdl.handle.net/2117/117810

cuHinesBatch: solving multiple hines systems on GPUs Human Brain Project

Συγγραφείς: Universitat Politècnica de Catalunya. Departament d'Arquitectura de Computadors, Barcelona Supercomputing Center, Universitat Politècnica de Catalunya. CAP - Grup de Computació d'Altes Prestacions, Valero-Lara, Pedro, Martinez-Perez, Ivan, Peña, Antonio J., Martorell Bofill, Xavier, Sirvent, Raul, Labarta Mancho, Jesús José

Όροι ευρετηρίου: Àrees temàtiques de la UPC::Informàtica::Arquitectura de computadors::Arquitectures paral·leles, Parallel programming (Computer science), Brain -- Data processing, Human brain, Neuron, Hines algorithm, Parallel computing, GPUs, Multicore, CUDA, Programació en paral·lel (Informàtica), Cervell -- Informàtica, Article

Σύνδεσμος: https://hdl.handle.net/2117/106615
http://www.sciencedirect.com/science/article/pii/S1877050917307172#fn1
http://www.sciencedirect.com/science/article/pii/S1877050917307172#fn1
info:eu-repo/grantAgreement/EC/H2020/720270/EU/Human Brain Project Specific Grant Agreement 1/HBP SGA1
info:eu-repo/grantAgreement/MINECO//TIN2015-65316-P/ES/COMPUTACION DE ALTAS PRESTACIONES VII
info:eu-repo/grantAgreement/MINECO//IJCI-2015-23266/ES/IJCI-2015-23266

Simplified two-compartment neuron with calcium dynamics capturing brain-state specific apical-amplification, -isolation and -drive.

Συγγραφείς: Pastorelli, Elena, Yegenoglu, Alper, Kolodziej, Nicole, Wybo, Willem, Simula, Francesco, Diaz-Pier, Sandra, Storm, Johan Frederik, Paolucci, Pier Stanislao

Πηγή: Frontiers in Computational Neuroscience; 2025, p1-20, 20p

Θεματικοί όροι: Machine learning, Pyramidal neurons, Sleep stages, Rapid eye movement sleep, Artificial intelligence

Simulating the behavior of the human brain on GPUS

Συγγραφείς: Universitat Politècnica de Catalunya. Departament d'Arquitectura de Computadors, Barcelona Supercomputing Center, Universitat Politècnica de Catalunya. CAP - Grup de Computació d'Altes Prestacions, Valero-Lara, Pedro, Martinez-Perez, Ivan, Sirvent, Raul, Peña, Antonio J., Martorell Bofill, Xavier, Labarta Mancho, Jesús José

Όροι ευρετηρίου: Àrees temàtiques de la UPC::Ciències de la salut::Medicina, Àrees temàtiques de la UPC::Informàtica, Brain, Computer science, Cervell, Informàtica, Article

Σύνδεσμος: https://hdl.handle.net/2117/128339
https://ogst.ifpenergiesnouvelles.fr/articles/ogst/abs/2018/01/ogst180058/ogst180058.html
https://ogst.ifpenergiesnouvelles.fr/articles/ogst/abs/2018/01/ogst180058/ogst180058.html
info:eu-repo/grantAgreement/EC/H2020/720270/EU/Human Brain Project Specific Grant Agreement 1/HBP SGA1
info:eu-repo/grantAgreement/EC/H2020/749516/EU/Advanced Ecosystem for Broad Heterogeneous Memory Usage/ECO-H-MEM
info:eu-repo/grantAgreement/MINECO//TIN2015-65316-P/ES/COMPUTACION DE ALTAS PRESTACIONES VII
info:eu-repo/grantAgreement/AGAUR/PRI2010-2013/2014 SGR 1051

Real-time multicompartment Hodgkin-Huxley neuron emulation on SoC FPGA.

Συγγραφείς: Beaubois, Romain, Cheslet, Jérémy, Ikeuchi, Yoshiho, Branchereau, Pascal, Levi, Timothee

Πηγή: Frontiers in Neuroscience; 2024, p1-15, 15p

Θεματικοί όροι: Neural circuitry, Neurological disorders, Biological networks, Computing platforms, Technological progress

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance.

Συγγραφείς: Awile, Omar, Kumbhar, Pramod, Cornu, Nicolas, Dura-Bernal, Salvador, King, James Gonzalo, Lupton, Olli, Magkanaris, Ioannis, McDougal, Robert A., Newton, Adam J. H., Pereira, Fernando, Săvulescu, Alexandru, Carnevale, Nicholas T., Lytton, William W., Hines, Michael L., Schürmann, Felix

Πηγή: Frontiers in Neuroinformatics; 6/27/2022, Vol. 16, p1-21, 21p

Θεματικοί όροι: Neurons, Multiscale modeling, Computer architecture, Biochemical models, Computational neuroscience, Compilers (Computer programs)

EDEN: A High-Performance, General-Purpose, NeuroML-Based Neural Simulator.

Συγγραφείς: Panagiotou, Sotirios, Sidiropoulos, Harry, Soudris, Dimitrios, Negrello, Mario, Strydis, Christos

Πηγή: Frontiers in Neuroinformatics; 5/20/2022, Vol. 16, p1-24, 24p

Θεματικοί όροι: Computer workstation clusters, High performance computing, Personal computers, Computer software reusability, Biological neural networks

Svep1 stabilises developmental vascular anastomosis in reduced flow conditions.

Συγγραφείς: Coxam, Baptiste, Collins, Russell T., Hußmann, Melina, Huisman, Yvonne, Meier, Katja, Jung, Simone, Bartels-Klein, Eireen, Szymborska, Anna, Finotto, Lise, Helker, Christian S. M., Stainier, Didier Y. R., Schulte-Merker, Stefan, Gerhardt, Holger

Πηγή: Development (0950-1991); Mar2022, Vol. 14 Issue 6, p1-13, 13p

Θεματικοί όροι: Zebra danio embryos, Blood flow, Cellular signal transduction, Blood vessels, Brachydanio, Neovascularization

Artery-vein specification in the zebrafish trunk is pre-patterned by heterogeneous Notch activity and balanced by flow-mediated fine tuning.

Συγγραφείς: Geudens, Ilse, Coxam, Baptiste, Alt, Silvanus, Gebala, Véronique, Vion, Anne-Clémence, Meier, Katja, Rosa, Andre, Gerhardt, Holger

Πηγή: Development (0950-1991); Aug2019, Vol. 146 Issue 15, p1-55, 55p

Θεματικοί όροι: Zebra danio embryos, Veins, Blood vessels, Endothelial cells, Arteries, Technical specifications, Endothelium, Brachial artery

Simulating the behavior of the human brain on GPUS

Συγγραφείς: Valero-Lara, Pedro, Martinez-Perez, Ivan, Sirvent, Raul, Peña, Antonio J., Martorell Bofill, Xavier, Labarta Mancho, Jesús José

Συνεισφορές: Universitat Politècnica de Catalunya. Departament d'Arquitectura de Computadors, Barcelona Supercomputing Center, Universitat Politècnica de Catalunya. CAP - Computació d'Altes Prestacions

Θεματικοί όροι: Àrees temàtiques de la UPC::Ciències de la salut::Medicina, Àrees temàtiques de la UPC::Informàtica, Brain, Computer science, Cervell, Informàtica

Περιγραφή αρχείου: application/pdf

Relation: https://ogst.ifpenergiesnouvelles.fr/articles/ogst/abs/2018/01/ogst180058/ogst180058.html; info:eu-repo/grantAgreement/EC/H2020/720270/EU/Human Brain Project Specific Grant Agreement 1/HBP SGA1; info:eu-repo/grantAgreement/EC/H2020/749516/EU/Advanced Ecosystem for Broad Heterogeneous Memory Usage/ECO-H-MEM; info:eu-repo/grantAgreement/MINECO//TIN2015-65316-P/ES/COMPUTACION DE ALTAS PRESTACIONES VII/; info:eu-repo/grantAgreement/AGAUR/PRI2010-2013/2014 SGR 1051; https://hdl.handle.net/2117/128339

Διαθεσιμότητα: https://hdl.handle.net/2117/128339
https://doi.org/10.2516/ogst/2018061

Parallel Algorithms for Parabolic Problems on Graphs in Neuroscience.

Συγγραφείς: Jeannot, Emmanuel, Žilinskas, Julius

Πηγή: High-Performance Computing on Complex Environments; 2014, p51-71, 21p

A Sparse Reformulation of the Green's Function Formalism Allows Efficient Simulations of Morphological Neuron Models.

Συγγραφείς: Wybo, Willem A. M., Boccalini, Daniele, Benjamin Torben-Nielsen, Gewaltig, Marc-Oliver

Πηγή: Neural Computation; 2015, Vol. 27 Issue 12, p2587-2622, 36p, 1 Diagram, 3 Graphs

Θεματικοί όροι: Mathematical reformulation, Green's functions, Partial differential equations, Generalization, Graph theory

Dense disparity estimation using Gabor filters and image derivatives.

Συγγραφείς: Ouali, M., Ziou, D., Laurgeau, C.

Πηγή: Second International Conference on 3-D Digital Imaging & Modeling (Cat NoPR00062); 1999, p483-489, 7p

Effects of Active Conductance Distribution over Dendrites on the Synaptic Integration in an Identified Nonspiking Interneuron.

Συγγραφείς: Takashima, Akira, Takahata, Masakazu

Πηγή: PLoS ONE; 2008, Vol. 3 Issue 5, p1-15, 15p, 9 Graphs

Θεματικοί όροι: Dendrites, Interneurons, Arthropoda physiology, Central nervous system physiology, Sodium channels, Potassium channels, Electric conductivity, Crayfish anatomy, Computer simulation, Physiology

Functional Significance of Passive and Active Dendritic Properties in the Synaptic Integration by an Identified Nonspiking Interneuron of Crayfish.

Συγγραφείς: Akira Takashima

Πηγή: Journal of Neurophysiology; Dec2006, Vol. 96 Issue 6, p3157-3169, 13p

Θεματικοί όροι: Interneurons, Synapses, Computer simulation, Crayfish

Effects of variability in anatomical reconstruction techniques on models of synaptic integration by dendrites: a comparison of three internet archives.

Συγγραφείς: Szilágyi, Tibor, De Schutter, Erik

Πηγή: European Journal of Neuroscience; Mar2004, Vol. 19 Issue 5, p1257-1266, 10p

Θεματικοί όροι: Neurons, Dynamics, Synapses

Extrapolation Methods for Sommerfeld Integral Tails.

Συγγραφείς: Michalski, Krzysztof A.

Πηγή: IEEE Transactions on Antennas & Propagation; Oct98, Vol. 46 Issue 10, p1405, 14p

Θεματικοί όροι: Extrapolation, Sommerfeld polynomial method, Antennas (Electronics)