Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight

Συγγραφείς: Ahmad, Tanveer, Ma, Chengxin, Al-Ars, Zaid, Hofstee, H. Peter

Πηγή: 2022 21st International Symposium on Parallel and Distributed Computing (ISPDC) ISPDC Parallel and Distributed Computing (ISPDC), 2022 21st International Symposium on. :138-146 Jul, 2022

Relation: 2022 21st International Symposium on Parallel and Distributed Computing (ISPDC)

ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow

Συγγραφείς: Ahmad, Tanveer, Ahmed, Nauman, Peltenburg, Johan, Al-Ars, Zaid

Πηγή: 2020 3rd International Conference on Computer Applications & Information Security (ICCAIS) Computer Applications & Information Security (ICCAIS), 2020 3rd International Conference on. :1-6 Mar, 2020

Relation: 2020 3rd International Conference on Computer Applications & Information Security (ICCAIS)

Accelerated Genomics Data Processing using Memory-Driven Computing

Συγγραφείς: Becker, Matthias, Chabbi, Milind, Warnat-Herresthal, Stefanie, Worlikar, Umesh, Agrawal, Shobhit, Bhat, Jaydeep, Schulte-Schrepping, Jonas, Bassler, Kevin, Guenther, Patrick, Schultze, Hartmut, Ulas, Thomas, Singhal, Sharad, Schultze, Joachim L.

Πηγή: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2019 IEEE International Conference on. :1850-1855 Nov, 2019

Relation: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight

Συγγραφείς: Ahmad, T. (author), Ma, Chengxin (author), Al-Ars, Z. (author), Hofstee, H.P. (author)

Όροι ευρετηρίου: Genomics, Whole Genome/Exome Sequencing, Big Data, Apache Arrow, In-Memory, Plasma Object Store, Parallel Processing, conference paper

Σύνδεσμος: http://resolver.tudelft.nl/uuid:867e7f25-6b2c-4769-8018-8f5ad2d2ac38
http://www.scopus.com/inward/record.url?scp=85142796080&partnerID=8YFLogxK
http://www.scopus.com/inward/record.url?scp=85142796080&partnerID=8YFLogxK
Proceedings of the 2022 21st International Symposium on Parallel and Distributed Computing (ISPDC)--978-1-6654-8803-7
2022 21st International Symposium on Parallel and Distributed Computing (ISPDC)--ae4772da-eecb-4dc2-9630-599dce54b37c

Scaling Genomics Data Processing with Memory-Driven Computing to Accelerate Computational Biology

Συγγραφείς: Schultze, Joachim L., Becker, Matthias, Worlikar, Umesh, Agrawal, Shobhit, Schultze, Hartmut, Ulas, Thomas, Singhal, Sharad

Συνεισφορές: Sadayappan, Ponnuswamy, Chamberlain, Bradford L., Juckeland, Guido, Ltaief, Hatem

Πηγή: Lecture Notes in Computer Science ISBN: 9783030507428
High Performance Computing
Cham : Springer International Publishing, Lecture Notes in Computer Science 12151, 328-344 (2020). doi:10.1007/978-3-030-50743-5_17
High Performance Computing / Sadayappan, Ponnuswamy (Editor) ; Cham : Springer International Publishing, 2020, Chapter 17 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-030-50742-8=978-3-030-50743-5 ; doi:10.1007/978-3-030-50743-5
High Performance Computing / Sadayappan, Ponnuswamy (Editor) ; Cham : Springer International Publishing, 2020, Chapter 17 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-030-50742-8=978-3-030-50743-5 ; doi:10.1007/978-3-030-50743-5International Conference on High Performance Computing

Θεματικοί όροι: Article

Σύνδεσμος πρόσβασης: https://link.springer.com/content/pdf/10.1007%2F978-3-030-50743-5_17.pdf
https://pub.dzne.de/record/164465

Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight

Συγγραφείς: Ahmad, Tanveer, primary

Πηγή: 2022/04/05

Σύνδεσμος πρόσβασης: https://www.biorxiv.org/content/biorxiv/early/2022/04/05/2022.04.01.486780.full.pdf

ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow

Συγγραφείς: Ahmad, T. (author), Ahmed, N. (author), Peltenburg, J.W. (author), Al-Ars, Z. (author)

Όροι ευρετηρίου: Apache Arrow, Big Data, Genomics, In-Memory, Parallel Processing, Whole Genome/Exome Sequencing, conference paper

Σύνδεσμος: http://resolver.tudelft.nl/uuid:31a08eed-9416-4787-ac30-9f41f45695fd
http://www.scopus.com/inward/record.url?scp=85085737283&partnerID=8YFLogxK
http://www.scopus.com/inward/record.url?scp=85085737283&partnerID=8YFLogxK
2020 3rd International Conference on Computer Applications & Information Security (ICCAIS)--978-1-7281-4214-2
3rd International Conference on Computer Applications and Information Security, ICCAIS 2020--59e51eed-cda1-4e81-b652-3f44f0c69799

ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow

Συγγραφείς: Ahmad, Tanveer, primary, Ahmed, Nauman, additional, Peltenburg, Johan, additional, Al-Ars, Zaid, additional

Πηγή: 2019/08/21

Σύνδεσμος πρόσβασης: https://repository.tudelft.nl/islandora/object/uuid%3A31a08eed-9416-4787-ac30-9f41f45695fd/datastream/OBJ/download

Influence of Gender-Specific Data Imbalance on scGPT Fine-Tuning for Single-Cell Genomics

Συγγραφείς: Al Amin, Mohammad Aman Ullah, Filienko, Daniil, Qin, Hong

Πηγή: Computer Science Faculty Publications

Θεματικοί όροι: Artificial intelligence—Sex differences, Bias in artificial intelligence, Big data—Sex differences, Bioinformatics, Cell populations—Sex differences, Cells—Classification—Data processing, Computational biology, Data imbalance (Machine learning), Gene expression—Analysis, Genomics—Data processing, Health disparities—Sex factors, Hematopoietic cells—Classification, Immune system—Sex differences, Machine learning—Sex differences, Medical informatics—Moral and ethical aspects, Monocytes—Sex differences, Natural killer cells—Sex differences, Precision medicine—Sex differences, Sex differences (Biology), Sex factors in disease, Single-cell RNA sequencing, T cells—Sex differences, Transformers (Machine learning), Artificial Intelligence and Robotics, Bioethics and Medical Ethics, Genetics and Genomics

Relation: https://digitalcommons.odu.edu/computerscience_fac_pubs/419; https://doi.org/10.1609/aaaiss.v7i1.36914

Διαθεσιμότητα: https://digitalcommons.odu.edu/computerscience_fac_pubs/419
https://doi.org/10.1609/aaaiss.v7i1.36914

Software Workflows and Infrastructures for Precision Oncology

Συγγραφείς: Osman, Waleed^Aff8, Laganà, Alessandro^Aff9

Συνεισφορές: Crusio, Wim E., Series Editor^Aff1, Dong, Haidong, Series Editor^Aff2, Radeke, Heinfried H., Series Editor^Aff3, Rezaei, Nima, Series Editor^Aff4, Steinlein, Ortrud, Series Editor^Aff5, Xiao, Junjie, Series Editor^Aff6, Laganà, Alessandro, editor^Aff7

Πηγή: Computational Methods for Precision Oncology. 1361:23-35

Joint work on cancer to protect privacy

Συγγραφείς: Rae, Sally

Πηγή: Otago daily times, 17 Jun 2023; p.12

Σύνδεσμος πρόσβασης: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE87946330

Algorithm Optimizations in Genomic Analysis Using Entropic Dissection

Συγγραφείς: Danks, Jacob R.

Συνεισφορές: Swigger, Kathleen M., Azad, Rajeev K., Bryce, Renee

Θεματικοί όροι: Genomic analysis, Computational biology, algorithm, parallel processing, Bioinformatics, Genomics -- Data processing, Computer algorithms, loss of accuracy

Περιγραφή αρχείου: Text

Identification of unknown organisms by DNA barcoding

Additional Titles: Identification of unknown organisms by Deoxyribonucleic acid barcoding
Molecular method for species classification
Technical memorandum ; no. 86-68220-14-14

Συγγραφείς: Keele, Jacque.

Θέματα: DNA fingerprinting of animals., DNA fingerprinting of plants., Sequence alignment (Bioinformatics), Genomics Data processing., Gene expression Research Methodology., Gene mapping., Polymerase chain reaction., Genetic markers., Bar coding., Gene amplification., Sequence Alignment, Chromosome Mapping, Polymerase Chain Reaction, Genetic Markers, Gene Amplification, Animaux Empreintes génétiques., Plantes Empreintes génétiques., Homologie de séquence (Bio-informatique), Génomique Informatique., Expression génique Recherche Méthodologie., Cartes chromosomiques., Réaction en chaîne de la polymérase., Marqueurs génétiques., Codes à barres., Amplification génique., Bar coding., DNA fingerprinting of animals., DNA fingerprinting of plants., Gene amplification., Gene expression Research Methodology., Gene mapping., Genetic markers., Genomics Data processing., Polymerase chain reaction., Sequence alignment (Bioinformatics)

Σύνδεσμος: http://worldcat.org/oclc/898736361/viewonline

Policy for sharing of data obtained in NIH supported or conducted genome-wide association studies (GWAS)

Θέματα: Genomics Data processing. United States, Disease susceptibility Genetic aspects Data processing., Genomics Standards United States., Communication in science Standards United States., Data protection Standards United States., Génomique Informatique. États-Unis, Prédisposition morbide Aspect génétique Informatique., Génomique Normes États-Unis., Information scientifique Normes États-Unis., Protection de l'information (Informatique) Normes. États-Unis, Communication in science Standards, Data protection Standards, Genomics Data processing, United States

Σύνδεσμος: http://grants.nih.gov/grants/guide/notice-files/NOT-OD-07-088.html
http://worldcat.org/oclc/184908555/viewonline

Reconstruction of novel transcription factor regulons through inference of their binding sites

Συγγραφείς: Abdulkadir Elmas, Xiaodong Wang 0001, Michael S. Samoilov

Πηγή: BMC Bioinformatics

Θεματικοί όροι: FOS: Computer and information sciences, Bioinformatics, Molecular biology, Genomics--Data processing, Biochemistry, Regulon, Computational biology, Bacterial Proteins, Escherichia coli, Transcription factors, Genetics, FOS: Mathematics, Molecular Biology, Binding Sites, Base Sequence, Methodology Article, Escherichia coli Proteins, Comparative genomics, Serine Endopeptidases, Computer Science Applications, Repressor Proteins, LexA Repressor Protein, Electrical engineering, FOS: Biological sciences, Algorithms, Mathematics, Protein Binding, Transcription Factors

Σύνδεσμος πρόσβασης: https://academiccommons.columbia.edu/doi/10.7916/D83T9V3B/download
https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0685-y
https://pubmed.ncbi.nlm.nih.gov/26388177

Analysis of incomplete gene expression dataset through protein-protein interaction information

Συγγραφείς: Raimon Massanet Vila, Teresa Padro, Anna Cardus, Lina Badimon, Pere Caminal, Alexandre Perera

Συνεισφορές: Universitat Politècnica de Catalunya. Departament d'Enginyeria de Sistemes, Automàtica i Informàtica Industrial, Universitat Politècnica de Catalunya. SISBIO - Senyals i Sistemes Biomèdics

Πηγή: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname

Θεματικοί όροι: Proteomics, 0301 basic medicine, Bioinformatics, 0206 medical engineering, 02 engineering and technology, Proteòmica, 03 medical and health sciences, Genomics -- Data processing, Protein Interaction Mapping, Image Processing, Computer-Assisted, Humans, Electrophoresis, Gel, Two-Dimensional, RNA, Messenger, Enginyeria biomèdica::Electrònica biomèdica [Àrees temàtiques de la UPC], Oligonucleotide Array Sequence Analysis, Models, Genetic, Gene Expression Profiling, Lasers, Àrees temàtiques de la UPC::Enginyeria biomèdica::Electrònica biomèdica, Atherosclerosis, Lipoproteins, LDL, Gene Expression Regulation, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Genòmica -- Processament de dades, Algorithms

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/22255911
http://hdl.handle.net/2117/14465

Design of information systems in computational genomics

Συγγραφείς: Croft, Larry.

Θεματικοί όροι: Computational biology, School of Molecular and Microbial Sciences, Genomics -- Mathematical models, Bioinformatics, 780105 Biological sciences, Genomics -- Data processing, 270100 Biochemistry and Cell Biology

Σύνδεσμος πρόσβασης: https://api.library.uq.edu.au/view/UQ:106956/THE17545.pdf
https://api.library.uq.edu.au/view/UQ:106956

Embedding indigenous principles in genomic research of culturally significant species : a conservation genomics case study

Συγγραφείς: Collier-Robinson, Levi

Πηγή: New Zealand journal of ecology, 2019; v.43 n.3:9p

Σύνδεσμος πρόσβασης: https://newzealandecology.org/nzje/3389.pdf
https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=FL49944953

Accelerating the BLAST algorithm via parrallel computing

Συγγραφείς: Calder, Mark.

Θεματικοί όροι: 290901 Electrical Engineering, Bioinformatics, School of Information Technology and Electrical Engineering, Genomics -- Data processing, 08 Information and Computing Sciences, BLAST (Electronic resource)

Σύνδεσμος πρόσβασης: https://api.library.uq.edu.au/view/UQ:268781/THE18388.pdf
https://api.library.uq.edu.au/view/UQ:268781

Detection of genomic variations with data from multiple sequencing platforms

Συγγραφείς: Yu, Huijing, 余卉菁

Συνεισφορές: Lam, TW, Luo, R, Ting, HF

Θεματικοί όροι: Genomics - Data processing, Bioinformatics

Relation: HKU Theses Online (HKUTO); Yu, H. [余卉菁]. (2023). Detection of genomic variations with data from multiple sequencing platforms. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR.; 991044791815203414; https://hub.hku.hk/handle/10722/342883

Διαθεσιμότητα: https://hub.hku.hk/handle/10722/342883