Influence of Gender-Specific Data Imbalance on scGPT Fine-Tuning for Single-Cell Genomics

Authors: Al Amin, Mohammad Aman Ullah, Filienko, Daniil, Qin, Hong

Source: Computer Science Faculty Publications

Subject Terms: Artificial intelligence—Sex differences, Bias in artificial intelligence, Big data—Sex differences, Bioinformatics, Cell populations—Sex differences, Cells—Classification—Data processing, Computational biology, Data imbalance (Machine learning), Gene expression—Analysis, Genomics—Data processing, Health disparities—Sex factors, Hematopoietic cells—Classification, Immune system—Sex differences, Machine learning—Sex differences, Medical informatics—Moral and ethical aspects, Monocytes—Sex differences, Natural killer cells—Sex differences, Precision medicine—Sex differences, Sex differences (Biology), Sex factors in disease, Single-cell RNA sequencing, T cells—Sex differences, Transformers (Machine learning), Artificial Intelligence and Robotics, Bioethics and Medical Ethics, Genetics and Genomics

Relation: https://digitalcommons.odu.edu/computerscience_fac_pubs/419; https://doi.org/10.1609/aaaiss.v7i1.36914

Availability: https://digitalcommons.odu.edu/computerscience_fac_pubs/419
https://doi.org/10.1609/aaaiss.v7i1.36914

Software Workflows and Infrastructures for Precision Oncology

Authors: Osman, Waleed^Aff8, Laganà, Alessandro^Aff9

Contributors: Crusio, Wim E., Series Editor^Aff1, Dong, Haidong, Series Editor^Aff2, Radeke, Heinfried H., Series Editor^Aff3, Rezaei, Nima, Series Editor^Aff4, Steinlein, Ortrud, Series Editor^Aff5, Xiao, Junjie, Series Editor^Aff6, Laganà, Alessandro, editor^Aff7

Source: Computational Methods for Precision Oncology. 1361:23-35

Joint work on cancer to protect privacy

Authors: Rae, Sally

Source: Otago daily times, 17 Jun 2023; p.12

Access URL: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE87946330

Algorithm Optimizations in Genomic Analysis Using Entropic Dissection

Authors: Danks, Jacob R.

Contributors: Swigger, Kathleen M., Azad, Rajeev K., Bryce, Renee

Subject Terms: Genomic analysis, Computational biology, algorithm, parallel processing, Bioinformatics, Genomics -- Data processing, Computer algorithms, loss of accuracy

File Description: Text

Identification of unknown organisms by DNA barcoding

Additional Titles: Identification of unknown organisms by Deoxyribonucleic acid barcoding
Molecular method for species classification
Technical memorandum ; no. 86-68220-14-14

Authors: Keele, Jacque.

Subjects: DNA fingerprinting of animals., DNA fingerprinting of plants., Sequence alignment (Bioinformatics), Genomics Data processing., Gene expression Research Methodology., Gene mapping., Polymerase chain reaction., Genetic markers., Bar coding., Gene amplification., Sequence Alignment, Chromosome Mapping, Polymerase Chain Reaction, Genetic Markers, Gene Amplification, Animaux Empreintes génétiques., Plantes Empreintes génétiques., Homologie de séquence (Bio-informatique), Génomique Informatique., Expression génique Recherche Méthodologie., Cartes chromosomiques., Réaction en chaîne de la polymérase., Marqueurs génétiques., Codes à barres., Amplification génique., Bar coding., DNA fingerprinting of animals., DNA fingerprinting of plants., Gene amplification., Gene expression Research Methodology., Gene mapping., Genetic markers., Genomics Data processing., Polymerase chain reaction., Sequence alignment (Bioinformatics)

URL: http://worldcat.org/oclc/898736361/viewonline

Policy for sharing of data obtained in NIH supported or conducted genome-wide association studies (GWAS)

Subjects: Genomics Data processing. United States, Disease susceptibility Genetic aspects Data processing., Genomics Standards United States., Communication in science Standards United States., Data protection Standards United States., Génomique Informatique. États-Unis, Prédisposition morbide Aspect génétique Informatique., Génomique Normes États-Unis., Information scientifique Normes États-Unis., Protection de l'information (Informatique) Normes. États-Unis, Communication in science Standards, Data protection Standards, Genomics Data processing, United States

URL: http://grants.nih.gov/grants/guide/notice-files/NOT-OD-07-088.html
http://worldcat.org/oclc/184908555/viewonline

Reconstruction of novel transcription factor regulons through inference of their binding sites

Authors: Abdulkadir Elmas, Xiaodong Wang 0001, Michael S. Samoilov

Source: BMC Bioinformatics

Subject Terms: FOS: Computer and information sciences, Bioinformatics, Molecular biology, Genomics--Data processing, Biochemistry, Regulon, Computational biology, Bacterial Proteins, Escherichia coli, Transcription factors, Genetics, FOS: Mathematics, Molecular Biology, Binding Sites, Base Sequence, Methodology Article, Escherichia coli Proteins, Comparative genomics, Serine Endopeptidases, Computer Science Applications, Repressor Proteins, LexA Repressor Protein, Electrical engineering, FOS: Biological sciences, Algorithms, Mathematics, Protein Binding, Transcription Factors

Access URL: https://academiccommons.columbia.edu/doi/10.7916/D83T9V3B/download
https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0685-y
https://pubmed.ncbi.nlm.nih.gov/26388177

Analysis of incomplete gene expression dataset through protein-protein interaction information

Authors: Raimon Massanet Vila, Teresa Padro, Anna Cardus, Lina Badimon, Pere Caminal, Alexandre Perera

Contributors: Universitat Politècnica de Catalunya. Departament d'Enginyeria de Sistemes, Automàtica i Informàtica Industrial, Universitat Politècnica de Catalunya. SISBIO - Senyals i Sistemes Biomèdics

Source: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname

Subject Terms: Proteomics, 0301 basic medicine, Bioinformatics, 0206 medical engineering, 02 engineering and technology, Proteòmica, 03 medical and health sciences, Genomics -- Data processing, Protein Interaction Mapping, Image Processing, Computer-Assisted, Humans, Electrophoresis, Gel, Two-Dimensional, RNA, Messenger, Enginyeria biomèdica::Electrònica biomèdica [Àrees temàtiques de la UPC], Oligonucleotide Array Sequence Analysis, Models, Genetic, Gene Expression Profiling, Lasers, Àrees temàtiques de la UPC::Enginyeria biomèdica::Electrònica biomèdica, Atherosclerosis, Lipoproteins, LDL, Gene Expression Regulation, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Genòmica -- Processament de dades, Algorithms

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/22255911
http://hdl.handle.net/2117/14465

Design of information systems in computational genomics

Authors: Croft, Larry.

Subject Terms: Computational biology, School of Molecular and Microbial Sciences, Genomics -- Mathematical models, Bioinformatics, 780105 Biological sciences, Genomics -- Data processing, 270100 Biochemistry and Cell Biology

Access URL: https://api.library.uq.edu.au/view/UQ:106956/THE17545.pdf
https://api.library.uq.edu.au/view/UQ:106956

Embedding indigenous principles in genomic research of culturally significant species : a conservation genomics case study

Authors: Collier-Robinson, Levi

Source: New Zealand journal of ecology, 2019; v.43 n.3:9p

Access URL: https://newzealandecology.org/nzje/3389.pdf
https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=FL49944953

Accelerating the BLAST algorithm via parrallel computing

Authors: Calder, Mark.

Subject Terms: 290901 Electrical Engineering, Bioinformatics, School of Information Technology and Electrical Engineering, Genomics -- Data processing, 08 Information and Computing Sciences, BLAST (Electronic resource)

Access URL: https://api.library.uq.edu.au/view/UQ:268781/THE18388.pdf
https://api.library.uq.edu.au/view/UQ:268781

Detection of genomic variations with data from multiple sequencing platforms

Authors: Yu, Huijing, 余卉菁

Contributors: Lam, TW, Luo, R, Ting, HF

Subject Terms: Genomics - Data processing, Bioinformatics

Relation: HKU Theses Online (HKUTO); Yu, H. [余卉菁]. (2023). Detection of genomic variations with data from multiple sequencing platforms. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR.; 991044791815203414; https://hub.hku.hk/handle/10722/342883

Availability: https://hub.hku.hk/handle/10722/342883

Aotearoa : leading the way

Authors: Zega, Nigel

Source: University of Otago magazine, Apr 2018; n.46:p.6-10

Access URL: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE40186662

Computational Genomics and Structural Bioinformatics in Microbial Science : Microbial Genomics Volume 2

Authors: Javid Ahmad Parray, Niraj Singh, Wen-Jun Li

Resource Type: eBook.

Subjects: Microbial genomics, Microbial genomics--Data processing, Metagenomics, Bioinformatics

Categories: SCIENCE / Life Sciences / Genetics & Genomics

Deep Learning in Genetics and Genomics : Volume 2: Advanced Applications

Authors: Khalid Raza

Resource Type: eBook.

Subjects: Genetics--Data processing, Genomics--Data processing, Deep learning (Machine learning)

Categories: SCIENCE / Life Sciences / Molecular Biology, SCIENCE / Bioinformatics

Applications of Deep Learning in Genomics

Authors: Bipin Kumar Rai, Rupa Rani, Gautam Kumar

Resource Type: eBook.

Subjects: Genomics--Data processing, Deep learning (Machine learning)

Categories: SCIENCE / Life Sciences / Genetics & Genomics, COMPUTERS / Artificial Intelligence / General, COMPUTERS / Data Science / Neural Networks, SCIENCE / Life Sciences / Neuroscience, COMPUTERS / Quantum Computing

Principles of Computational Genomics

Authors: Paolo Provero

Resource Type: eBook.

Subjects: Genomics--Data processing

Categories: SCIENCE / Bioinformatics, SCIENCE / Life Sciences / Genetics & Genomics

Deep Learning in Genetics and Genomics : Volume 1: Foundations and Introductory Applications

Authors: Khalid Raza

Resource Type: eBook.

Subjects: Genomics--Data processing, Genetics--Data processing, Deep learning (Machine learning), Artificial intelligence--Biological applications

Categories: SCIENCE / Life Sciences / Molecular Biology, SCIENCE / Bioinformatics

Computational Intelligence for Genomics Data

Authors: Babita Pandey, Valentina Emilia Balas, Suman Lata Tripathi, Devendra Kumar Pandey, Mufti Mahmud

Resource Type: eBook.

Subjects: Computational biology, Genomics--Data processing, Genomics, Computational intelligence

Categories: COMPUTERS / Programming / Algorithms, COMPUTERS / Data Science / General

Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants

Authors: Elmas, Abdulkadir, Ou Yang, Tai-Hsien, Wang, Xiaodong, Anastassiou, Dimitris

Subject Terms: Genomics--Data processing, Human genetics--Data processing, Chromosomes, Gene mapping, Single nucleotide polymorphisms, Genetics, Biology--Classification

Relation: https://doi.org/10.7916/D8WW7PCX

Availability: https://doi.org/10.7916/D8WW7PCX