Rethinking scale in AI-driven genomic medicine – the role of small biobanks

Authors: Grech, Laura, Pace, Nikolai Paul

Subject Terms: Biobanks -- Moral and ethical aspects, Artificial intelligence -- Medical applications, Medical genetics -- Data processing, Human genome -- Health aspects, Genomic medicine

Relation: https://www.um.edu.mt/library/oar/handle/123456789/148788

Availability: https://www.um.edu.mt/library/oar/handle/123456789/148788
https://doi.org/10.3389/fgene.2026.1903325

Analysis of well-annotated next-generation sequencing data reveals increasing cases of SARS-CoV-2 reinfection with Omicron

Authors: Burkholz, Scott, Rubsamen, Michael, Blankenberg, Luke, Carback, III, Richard T., Mochly-Rosen, Daria, Harris, Paul Emerson

Subject Terms: Virus diseases, COVID-19 (Disease)--Data processing, Genetics--Data processing, High-throughput nucleotide sequencing

Availability: https://doi.org/10.7916/c86y-0g98

Analysis of well-annotated next-generation sequencing data reveals increasing cases of SARS-CoV-2 reinfection with Omicron

Authors: Scott Burkholz, Michael Rubsamen, Luke Blankenberg, Richard T. Carback, Daria Mochly-Rosen, Paul E. Harris

Source: Commun Biol
Communications Biology, Vol 6, Iss 1, Pp 1-6 (2023)

Subject Terms: COVID-19 (Disease)--Data processing, QH301-705.5, SARS-CoV-2, COVID-19, High-Throughput Nucleotide Sequencing, Genomics, Article, 3. Good health, Genetics--Data processing, Reinfection, Humans, Biology (General), High-throughput nucleotide sequencing, Virus diseases

Access URL: https://pubmed.ncbi.nlm.nih.gov/36934204
https://doaj.org/article/78d2ae20de1b44f780814d6cc4a52440

Living with long Covid 'like Groundhog Day'

Authors: Martin, Hannah

Source: Press (Christchurch, N.Z.), 27 Mar 2023; p.18-19

Access URL: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE86408309

To gene or not to gene : genetic privacy implications in the age of big data

Authors: Prabhakar, Gauri

Source: Public interest law journal of New Zealand, 2021; p.60-80

Access URL: http://www.nzlii.org/nz/journals/NZPubIntLawJl/2021/6.html
https://ndhadeliver.natlib.govt.nz/webarchive/20230919105351/http://www.nzlii.org/nz/journals/NZPubIntLawJl/2021/6.html

Breeding indexes too simple

Authors: Taylor, Sandra

Source: Country-wide (2010), Dec 2019; v.41 n.12:p.50-51

Access URL: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE48751261

SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine

Authors: Blindenbach, Jacob, Kang, Jiayi, Hong, Seungwan, Karam, Caline, Lehner, Thomas, Gürsoy, Gamze

Subject Terms: Personalized medicine, Phenotype, Human genetics--Data processing

Availability: https://doi.org/10.7916/qcbp-a746

Pedigree Analysis in R

Authors: Magnus Dehli Vigeland

Resource Type: eBook.

Subjects: R (Computer program language), Forensic genetics--Data processing, Medical genetics--Data processing

Categories: LAW / Forensic Science

Deep Learning in Genetics and Genomics : Volume 2: Advanced Applications

Authors: Khalid Raza

Resource Type: eBook.

Subjects: Genetics--Data processing, Genomics--Data processing, Deep learning (Machine learning)

Categories: SCIENCE / Life Sciences / Molecular Biology, SCIENCE / Bioinformatics

Deep Learning in Genetics and Genomics : Volume 1: Foundations and Introductory Applications

Authors: Khalid Raza

Resource Type: eBook.

Subjects: Genomics--Data processing, Genetics--Data processing, Deep learning (Machine learning), Artificial intelligence--Biological applications

Categories: SCIENCE / Life Sciences / Molecular Biology, SCIENCE / Bioinformatics

Family based studies in complex disorders : the use of bioinformatics software for data analysis in studies on osteoporosis

Authors: Vidal, Christopher, Xuereb-Anastasi, Angela

Subject Terms: Medical informatics, Bioinformatics, Genetics -- Data processing

Relation: https://www.um.edu.mt/library/oar//handle/123456789/3938

Availability: https://www.um.edu.mt/library/oar//handle/123456789/3938
https://doi.org/10.5772/18914

Pathogenic Mutations in Cancer-Predisposing Genes: A Survey of 300 Patients with Whole-Genome Sequencing and Lifetime Electronic Health Records

Authors: He, Karen Y., Zhao, Yiqing, McPherson, Elizabeth W., Li, Quan, Wang, Kai, Xia, Fan, Weng, Chunhua, He, Max M.

Subject Terms: Human genetics, Cancer--Genetic aspects, Human genetics--Data processing, Medical records--Data processing, Genomics, Medicine, Genetics, Bioinformatics

Relation: https://doi.org/10.7916/D8DZ0F0S

Availability: https://doi.org/10.7916/D8DZ0F0S

Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants

Authors: Elmas, Abdulkadir, Ou Yang, Tai-Hsien, Wang, Xiaodong, Anastassiou, Dimitris

Subject Terms: Genomics--Data processing, Human genetics--Data processing, Chromosomes, Gene mapping, Single nucleotide polymorphisms, Genetics, Biology--Classification

Relation: https://doi.org/10.7916/D8WW7PCX

Availability: https://doi.org/10.7916/D8WW7PCX

An efficient pipeline to generate data for studies in plastid population genomics and phylogeography

Authors: Kohrn, Brendan F., Persinger, Jessica M., Cruzan, Mitchell B.

Source: Applications in plant sciences. 5(11)

Subject Terms: Plastids -- Phylogeography, Metagenomics, Biology, Mitochondrial DNA, Molecular genetics -- Data processing

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/29188144

Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa

Authors: Premachandra, Tharindu, Cauret, Caroline M. S., Conradie, Werner, Measey, John, Evans, Ben J.

Subject Terms: Gene flow, Xenopus laevis -- Africa, Southern, Phylogeography -- Africa, Polyploid ratchet, Population genetics -- Data processing, Frogs

File Description: 13 pages : illustrations, maps; application/pdf

Relation: Premachandra, T. et al .2022. Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa. G3 Genes%7CGenomes%7CGenetics, 13(2), doi:10.1093/g3journal/jkac325.; https://scholar.sun.ac.za/handle/10019.1/132972

Availability: https://doi.org/10.1093/g3journal/jkac325
https://scholar.sun.ac.za/handle/10019.1/132972

Computational algorithm development for epigenomic analysis

Authors: Wang, Jianrong

Thesis Advisors: Jordan, I. King

Subject Terms: ChIP-seq, Histone modifications, Bioinformatics, Epigenetics, Insulators, Algorithms, Genetics Data processing, Epigenesis

Availability: http://hdl.handle.net/1853/48984

A method to identify differential expression profiles of time-course gene data with Fourier transformation

Authors: Kim, Jaehee, Ogden, Robert T., Kim, Haseong

Subject Terms: Gene expression--Data processing, Genetics--Data processing, Fourier analysis, Bioinformatics, Gene expression, Genetics, Biology

Relation: https://doi.org/10.7916/D8S75DT6

Availability: https://doi.org/10.7916/D8S75DT6

OGA: an ontological tool of human phenotypes with genetic associations

Authors: Herrera-Galeano, Jesus, Hirschberg, David L., Mokashi, Vishwesh, Solka, Jeffrey

Subject Terms: Phenotype, Gene mapping, Genomes, Bioinformatics, Ontology--Methodology, Genomes--Data processing, Genetics--Data processing, Genetics

Relation: https://doi.org/10.7916/D8S180Z3

Availability: https://doi.org/10.7916/D8S180Z3

PhenoGO: an integrated resource for the multiscale mining of clinical and biological data

Authors: Sam, Lee, Mendonça, Eneida, Li, Jianrong, Blake, Judith, Friedman, Carol, Lussier, Yves

Subject Terms: Bioinformatics, Genetics--Data processing, Genetics—Research

Relation: https://doi.org/10.7916/D8XD1038

Availability: https://doi.org/10.7916/D8XD1038

Construction of the model for the Genetic Analysis Workshop 14 simulated data.

Authors: Greenberg, David, Zhang, Junying, Shmulewitz, Dvora, Strug, Lisa J., Zimmerman, Regina, Singh, Veena, Marathe, Sudhir

Subject Terms: Gene mapping, Genetics--Data processing, Linkage (Genetics), Biometry, Genetics

Relation: https://doi.org/10.7916/D8P26WM1

Availability: https://doi.org/10.7916/D8P26WM1