Privacy-Preserving Techniques for Genotype-Phenotype Association Studies

Συγγραφείς: Choi, Yoolim

Θεματικοί όροι: Bioinformatics, Biometry, Genomics, Phenotype, Personalized medicine, Machine learning, Gene expression--Data processing, Genetic transcription, Cryptography

Διαθεσιμότητα: https://doi.org/10.7916/159w-bw62

DEvis: an R package for aggregation and visualization of differential expression data

Συγγραφείς: Price, Adam, Caciula, Adrian, Guo, Cheng, Lee, Bohyun, Morrison, Juliet, Rasmussen, Angela, Lipkin, W. I., Jain, Komal

Θεματικοί όροι: Nucleotide sequence, Gene expression, Gene expression--Data processing

Διαθεσιμότητα: https://doi.org/10.7916/ppp7-hc63

DEvis: an R package for aggregation and visualization of differential expression data

Συγγραφείς: Adam Price, Adrian Caciula, Cheng Guo 0010, Bohyun Lee, Juliet Morrison, Angela Rasmussen, W. Ian Lipkin, Komal Jain

Πηγή: BMC Bioinformatics
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-7 (2019)
BMC Bioinformatics, vol 20, iss 1

Θεματικοί όροι: 0301 basic medicine, Bioinformatics, QH301-705.5, Computer applications to medicine. Medical informatics, Bioinformatics and Computational Biology, Integration, R858-859.7, Mathematical sciences, Gene expression--Data processing, Mathematical Sciences, Data Aggregation, 03 medical and health sciences, Differential expression, Information and Computing Sciences, Humans, RNA-Seq, Biology (General), Transcriptomics, Visualization, 0303 health sciences, Sequence Analysis, RNA, Gene Expression Profiling, Reproducibility of Results, Project Management, Biological Sciences, Data aggregation, Biological sciences, Information and computing sciences, RNA, Gene expression, Transcriptome, Nucleotide sequence, Sequence Analysis, Software

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2702-z
https://pubmed.ncbi.nlm.nih.gov/30832568
https://doaj.org/article/1ebce512dcea48f2acdb36ae5250b2b4
https://escholarship.org/content/qt4sv7w8kt/qt4sv7w8kt.pdf
https://escholarship.org/uc/item/4sv7w8kt

Low dimensional structure in single cell data

Συγγραφείς: Kunes, Russell Allen Zhang

Θεματικοί όροι: Statistics, Biostatistics, RNA--Data processing, Gene expression--Data processing, Latent variables

Διαθεσιμότητα: https://doi.org/10.7916/96ay-zy30

Accelerated parallel algorithm for gene network reverse engineering

Συγγραφείς: He, Jing, Zhou, Zhou, Reed, Michael K., Califano, Andrea

Θεματικοί όροι: Parallel programming (Computer science), Gene regulatory networks, Gene expression--Data processing, Systems biology

Relation: https://doi.org/10.7916/D8DZ0MZD

Διαθεσιμότητα: https://doi.org/10.7916/D8DZ0MZD

Accelerated parallel algorithm for gene network reverse engineering

Συγγραφείς: Jing He, Zhou Zhou, Michael Reed, Andrea Califano

Πηγή: BMC Syst Biol

Θεματικοί όροι: 0301 basic medicine, 0303 health sciences, Time Factors, Research, Forkhead Box Protein M1, Computational Biology, Parallel programming (Computer science), Gene expression--Data processing, Regulon, Gene regulatory networks, 03 medical and health sciences, Computer Graphics, Gene Regulatory Networks, Systems biology, Algorithms

Σύνδεσμος πρόσβασης: https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0458-5
https://pubmed.ncbi.nlm.nih.gov/28950860

Differential expression of discriminative markers in matched invasion fronts and tumour buds in CRC ; 47P Differential expression of discriminative markers in matched invasion fronts and tumour buds in CRC

Συγγραφείς: Grech, Laura, Debattista, Jessica, Pisani, D., Grech, Godfrey

Θεματικοί όροι: Colon (Anatomy) -- Cancer -- Prognosis, Tumor markers -- Analysis, Tumors -- Classification, Gene expression -- Data processing

Relation: Grech, L., Debattista, J., Pisani, D., & Grech, G. (2023). 47P Differential expression of discriminative markers in matched invasion fronts and tumour buds in CRC. ESMO Open, 8(1), doi:10.1016/j.esmoop.2023.101857; https://www.um.edu.mt/library/oar/handle/123456789/130916

Διαθεσιμότητα: https://www.um.edu.mt/library/oar/handle/123456789/130916
https://doi.org/10.1016/j.esmoop.2023.101857

A method to identify differential expression profiles of time-course gene data with Fourier transformation

Συγγραφείς: Kim, Jaehee, Ogden, Robert T., Kim, Haseong

Θεματικοί όροι: Gene expression--Data processing, Genetics--Data processing, Fourier analysis, Bioinformatics, Gene expression, Genetics, Biology

Relation: https://doi.org/10.7916/D8S75DT6

Διαθεσιμότητα: https://doi.org/10.7916/D8S75DT6

Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution

Συγγραφείς: Novak, Jaroslav, Kim, Seon-Young, Xu, Jun, Modlich, Olga, Volsky, David Julian, Honys, David, Slonczewski, Joan, Bell, Douglas, Blattner, Fred, Blumwald, Eduardo, Boerma, Marjan, Cosio, Manuel, Gatalica, Zoran, Hajduch, Marian, Hidalgo, Juan, McInnes, Roderick, Miller III, Merrill, Penkowa, Milena, Rolph, Michael, Sottosanto, Jordan, St-Arnaud, Rene, Szego, Michael, Twell, David, Wang, Charles

Θεματικοί όροι: Gene expression--Mathematical models, Gene expression--Data processing, Biometry, DNA microarrays--Statistical methods, Genetics

Relation: https://doi.org/10.7916/D8GT5KN3

Διαθεσιμότητα: https://doi.org/10.7916/D8GT5KN3

ErmineJ: Tool for functional analysis of gene expression data sets

Συγγραφείς: Lee, Homin, Braynen, William, Keshav, Kiran, Pavlidis, Paul

Θεματικοί όροι: Hypergeometric distribution, Gene expression--Data processing, Bioinformatics, DNA microarrays--Data processing, Genetics

Relation: https://doi.org/10.7916/D8QV3K0B

Διαθεσιμότητα: https://doi.org/10.7916/D8QV3K0B

Gene Expression Data Analysis : A Statistical and Machine Learning Perspective

Συγγραφείς: Pankaj Barah, Dhruba Kumar Bhattacharyya, Jugal Kumar Kalita

Resource Type: eBook.

Θέματα: Machine learning, Gene expression--Data processing, Gene expression--Statistical methods

Categories: SCIENCE / Bioinformatics, SCIENCE / Life Sciences / Molecular Biology, COMPUTERS / Data Science / Machine Learning

Analyzing High-Dimensional Gene Expression and DNA Methylation Data with R

Συγγραφείς: Hongmei Zhang

Resource Type: eBook.

Θέματα: Gene expression--Data processing, Gene expression--Statistical methods, DNA--Methylation, R (Computer program language), Epigenetics--Statistical methods

Categories: SCIENCE / Bioinformatics, COMPUTERS / Data Science / Data Analytics

A method to identify differential expression profiles of time-course gene data with Fourier transformation

Συγγραφείς: Jaehee Kim, R. Todd Ogden, Haseong Kim

Πηγή: BMC Bioinformatics
BMC BIOINFORMATICS(14)

Θεματικοί όροι: FOS: Computer and information sciences, Time Factors, Fourier Analysis, Models, Genetic, Bioinformatics, Gene Expression Profiling, Cell Cycle, Computational Biology, Saccharomyces cerevisiae, Gene expression--Data processing, Biochemistry, Sensitivity and Specificity, Fourier analysis, Computer Science Applications, Genetics--Data processing, FOS: Biological sciences, Genetics, Cluster Analysis, Gene expression, Molecular Biology, Biology, Research Article, Oligonucleotide Array Sequence Analysis

Σύνδεσμος πρόσβασης: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-310
https://pubmed.ncbi.nlm.nih.gov/24134721
http://open-repository.kisti.re.kr/cube/handle/open_repository/473723.do

Effect of single-cell RNA sequencing parameters on cluster stability

Συγγραφείς: Potgieter, Tiqvah Talya

Συνεισφορές: Maasdorp, Elizna, Patterton, Hugh, Stellenbosch University. Faculty of Science. Center for Bioinformatics and Computational Biology.

Θεματικοί όροι: Gene expression -- Data processing, Cluster analysis -- Data processing, Stability, Nucleotide sequence -- Technique, Cells -- Analysis, Single-cell RNA sequencing, UCTD

Περιγραφή αρχείου: xi, 90 pages : illustrations; application/pdf

Relation: https://scholar.sun.ac.za/handle/10019.1/132494

Διαθεσιμότητα: https://scholar.sun.ac.za/handle/10019.1/132494

ErmineJ: Tool for functional analysis of gene expression data sets

Συγγραφείς: Homin K. Lee, William Braynen, Kiran Keshav, Paul Pavlidis

Πηγή: BMC Bioinformatics
BMC Bioinformatics, Vol 6, Iss 1, p 269 (2005)

Θεματικοί όροι: FOS: Computer and information sciences, 0301 basic medicine, 0303 health sciences, QH301-705.5, Bioinformatics, Computer applications to medicine. Medical informatics, R858-859.7, Hypergeometric distribution, Gene expression--Data processing, User-Computer Interface, 03 medical and health sciences, FOS: Biological sciences, Genetics, Animals, Humans, Biology (General), DNA microarrays--Data processing, Software, Oligonucleotide Array Sequence Analysis

Σύνδεσμος πρόσβασης: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-6-269
https://pubmed.ncbi.nlm.nih.gov/16280084
https://doaj.org/article/bd2ddd13e65b46b5bbd0d36ddc37a9e4

Genome scale meta analysis of microarrays for biological inferences

Συγγραφείς: Srivastava, Gyan Prakash, 1979

Συνεισφορές: Xu, Dong, 1965

Θεματικοί όροι: Genomics -- Data processing, DNA microarrays -- Data processing, Arabidopsis -- Genetics -- Data processing, Gene expression -- Data processing

Σύνδεσμος πρόσβασης: https://mospace.umsystem.edu/xmlui/bitstream/10355/6841/1/public.pdf

Confounding effects in gene expression and their impact on downstream analysis

Συγγραφείς: Lachmann, Alexander

Θεματικοί όροι: Genetic regulation, Genetic regulation--Data processing, Gene expression, Gene expression--Data processing, Bioinformatics, Gene regulatory networks, Genetics

Relation: https://doi.org/10.7916/D82J6BRF

Διαθεσιμότητα: https://doi.org/10.7916/D82J6BRF

In silico prediction of cis-regulatory elements of genes involved in hypoxic-ischaemic insult

Συγγραφείς: Fu, Wai, 符慧

Thesis Advisors: Chung, BHY, Cheung, PT

Θεματικοί όροι: Cerebral anoxia., Cerebral ischemia., Brain - Wounds and injuries., Genetic regulation - Data processing., Gene expression - Data processing., Transcription factors.

Relation: HKU Theses Online (HKUTO)

Identification and assessment of gene signatures in human breast cancer ; Identification et évaluation de signatures géniques dans le cancer du sein humain

Συγγραφείς: Haibe-Kains, Benjamin

Συνεισφορές: Bontempi, Gianluca, Sotiriou, Christos, Lenaerts, Tom, Moreau, Yves, Delorenzi, Mauro, Bersini, Hugues, van Helden, Jacques, Decaestecker, Christine

Θεματικοί όροι: Informatique générale, Sciences exactes et naturelles, Breast -- Cancer -- Data processing, Breast -- Cancer -- Genetic aspects -- Data processing, Breast -- Cancer -- Prognosis -- Data processing, DNA microarrays, Gene expression -- Data processing, Sein -- Cancer -- Informatique, Sein -- Cancer -- Aspect génétique -- Informatique, Sein -- Cancer -- Pronostic -- Informatique, Puces à ADN, Expression génique -- Informatique, apprentissage automatique, machine learning

Περιγραφή αρχείου: 1 full-text file(s): application/pdf

Relation: local/ulbcat.ulb.ac.be:843350

Διαθεσιμότητα: https://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/210348
https://dipot.ulb.ac.be/dspace/bitstream/2013/210348/1/0edb320b-c02a-49c0-bb87-8165a5d231ec.txt

Pattern analysis of microarray data. ; 基因芯片數據中的模式分析 ; CUHK electronic theses & dissertations collection ; Ji yin xin pian shu ju zhong de mo shi fen xi

Συνεισφορές: Teng, Li., Chinese University of Hong Kong Graduate School. Division of Computer Science and Engineering.

Θεματικοί όροι: DNA microarrays, Gene expression--Data processing

Περιγραφή αρχείου: electronic resource; microform; microfiche; 1 online resource (vii, 128 leaves : ill.)

Relation: cuhk:344387; http://library.cuhk.edu.hk/record=b6074754

Διαθεσιμότητα: http://library.cuhk.edu.hk/record=b6074754
https://repository.lib.cuhk.edu.hk/en/item/cuhk-344387