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1Academic Journal
Authors: Pierre Solomon, Lalit Kaurani, Monika Budde, Jean-Baptiste Guiné, Dennis Manfred Krüger, Kevin Riquin, Tonatiuh Pena, Susanne Burkhardt, Cynthia Fourgeux, Kristina Adorjan, Maria Heilbronner, Janos L. Kalman, Mojtaba Oraki Kohshour, Sergi Papiol, Daniela Reich-Erkelenz, Sabrina K. Schaupp, Eva C. Schulte, Fanny Senner, Thomas Vogl, Ion-George Anghelescu, Volker Arolt, Bernhardt T. Baune, Udo Dannlowski, Detlef E. Dietrich, Andreas J. Fallgatter, Christian Figge, Georg Juckel, Carsten Konrad, Jens Reimer, Eva Z. Reininghaus, Max Schmauß, Carsten Spitzer, Jens Wiltfang, Jörg Zimmermann, Anna-Lena Schütz, Farahnaz Sananbenesi, Anne Sauvaget, Peter Falkai, Thomas G. Schulze, André Fischer, Urs Heilbronner, Jeremie Poschmann
Contributors: KERANDEL-DION, Céline, Solomon, Pierre, Kaurani, Lalit, Budde, Monika, Guiné, Jean-Baptiste, Krüger, Dennis Manfred, Riquin, Kevin, Pena, Tonatiuh, Burkhardt, Susanne, Fourgeux, Cynthia, Adorjan, Kristina, Poschmann, Jeremie, Fischer, André
Source: Molecular psychiatry 30(9), 4364-4383 (2025). doi:10.1038/s41380-025-03018-9
Molecular psychiatrySubject Terms: Male, Adult, Bipolar Disorder, Transcriptome: genetics, Psychotic Disorders: genetics, Bipolar Disorder: genetics, MicroRNAs: genetics, Schizophrenia: genetics, Humans, Gene Regulatory Networks, Schizophrenia: metabolism, Mental Disorders: genetics, Genome-Wide Association Study: methods, Mental Disorders, Gene Expression Profiling, Gene Expression Profiling: methods, MicroRNAs: metabolism, Middle Aged, Gene Regulatory Networks: genetics, [SDV] Life Sciences [q-bio], MicroRNAs, Psychotic Disorders, Schizophrenia, Female, Transcriptome, Genome-Wide Association Study
File Description: application/pdf
Access URL: https://pubmed.ncbi.nlm.nih.gov/40263528
https://pub.dzne.de/record/280292
https://inserm.hal.science/inserm-05117288v1
https://doi.org/10.1038/s41380-025-03018-9
https://inserm.hal.science/inserm-05117288v1/document
https://resolver.sub.uni-goettingen.de/purl?gro-2/148933
https://hdl.handle.net/21.11116/0000-0011-1BED-5 -
2Academic Journal
Authors: Qiu, Wei, Dincer, Ayse B, Janizek, Joseph D, Celik, Safiye, Pittet, Mikaël, Naxerova, Kamila, Lee, Su-In
Source: Nature Biomedical Engineering. 9:333-355
Subject Terms: Gene Expression Profiling / methods, Gene Expression Regulation, Neoplastic, Deep Learning, Neoplasms, Gene Expression Profiling, Mutation, Humans, 616.07, Neoplasms / genetics, Transcriptome, Unsupervised Machine Learning
File Description: application/pdf
Access URL: https://pubmed.ncbi.nlm.nih.gov/39690287
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3Academic Journal
Authors: Frederic B Bastian, Alessandro Brandulas Cammarata, Sara Carsanaro, Harald Detering, Wan-Ting Huang, Sagane Joye, Anne Niknejad, Marion Nyamari, Tarcisio Mendes de Farias, Sébastien Moretti, Marianna Tzivanopoulou, Julien Wollbrett, Marc Robinson-Rechavi
Source: Nucleic Acids Res
Nucleic acids research, vol. 53, no. D1, pp. D878-D885Subject Terms: 0301 basic medicine, Internet, 0303 health sciences, Gene Expression Profiling, Molecular Sequence Annotation, Single-Cell Gene Expression Analysis, Animals, Single-Cell Analysis/methods, RNA-Seq/methods, Software, Databases, Genetic, Humans, Gene Expression Profiling/methods, Data Curation, 03 medical and health sciences, Database Issue, RNA-Seq, Single-Cell Analysis
File Description: application/pdf
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4Academic Journal
Authors: Marco Colonna, Genevieve Konopka, Shane A. Liddelow, Tomasz Nowakowski, Rajeshwar Awatramani, Helen S. Bateup, Cathryn R. Cadwell, Emre Caglayan, Jerry L. Chen, Jesse Gillis, Martin Kampmann, Fenna Krienen, Samuel E. Marsh, Michelle Monje, Michael R. O’Dea, Rickie Patani, Alex A. Pollen, Francisco J. Quintana, Marissa Scavuzzo, Matthew Schmitz, Steven A. Sloan, Paul J. Tesar, Jessica Tollkuhn, Maria Antonietta Tosches, Madeleine E. Urbanek, Jonathan M. Werner, Omer A. Bayraktar, Ozgun Gokce, Naomi Habib
Source: Nature neuroscience 27(12), 2310-2325 (2024). doi:10.1038/s41593-024-01814-0
Subject Terms: Genomics: methods, Neurosciences: methods, Gene Expression Profiling, Neurosciences, Animals, Humans, Gene Expression Profiling: methods, Genomics, Single-Cell Analysis, Transcriptome, Single-Cell Analysis: methods
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5Academic Journal
Authors: Martin Emons, Samuel Gunz, Helena L Crowell, Izaskun Mallona, Malte Kuehl, Reinhard Furrer, Mark D Robinson
Source: Nucleic Acids Res
Emons, M, Gunz, S, Crowell, H L, Mallona, I, Kuehl, M, Furrer, R & Robinson, M D 2025, 'Harnessing the potential of spatial statistics for spatial omics data with pasta', Nucleic Acids Research, vol. 53, no. 17, gkaf870. https://doi.org/10.1093/nar/gkaf870Subject Terms: 510 Mathematics, Gene Expression Profiling, Humans, High-Throughput Nucleotide Sequencing, Breast Neoplasms, Female, Genomics, Breast Neoplasms/genetics, Gene Expression Profiling/methods, Software, Genomics/methods, Critical Reviews and Perspectives
Access URL: https://pubmed.ncbi.nlm.nih.gov/40930531
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6Academic Journal
Source: Commun Biol
Subject Terms: Gene Expression Profiling / methods, Computational Biology / methods, Neoplasms / pathology, DNA Copy Number Variations, Gene Expression Profiling, Computational Biology, Review Article, 616.07, Neoplasms / genetics, Gene Expression Regulation, Neoplastic, Biomarkers, Tumor / genetics, Single-Cell Analysis / methods, Neoplasms, Biomarkers, Tumor, Humans, Single-Cell Analysis, Transcriptome
File Description: application/pdf
Linked Full TextAccess URL: https://pubmed.ncbi.nlm.nih.gov/40846797
https://pubmed.ncbi.nlm.nih.gov/40846797/
https://doi.org/10.1038/s42003-025-08695-4
https://pmc.ncbi.nlm.nih.gov/articles/PMC12373766/
https://archive-ouverte.unige.ch/unige:187363
https://doi.org/10.1038/s42003-025-08695-4 -
7Academic Journal
Authors: Uday S. Shanthamallu, Casey Kilpatrick, Alex Jones, Jonathan Rubin, Alif Saleh, Albert-László Barabási, Viatcheslav R. Akmaev, Susan D. Ghiassian
Source: The Journal of Molecular Diagnostics. 26:917-930
Subject Terms: Crohn Disease/genetics, Arthritis, Gene Expression Profiling, Precision Medicine/methods, Colitis, Infliximab, Rheumatoid/drug therapy, Autoimmune Diseases/diagnosis, Autoimmune Diseases, Machine Learning, Arthritis, Rheumatoid, Infliximab/therapeutic use, Crohn Disease, Ulcerative/drug therapy, Humans, Colitis, Ulcerative, Protein Interaction Maps, Gene Expression Profiling/methods, Precision Medicine, Biomarkers
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8Academic Journal
Authors: Jorge Ruiz-Orera, Duncan C. Miller, Johannes Greiner, Carolin Genehr, Aliki Grammatikaki, Susanne Blachut, Jeanne Mbebi, Giannino Patone, Anna Myronova, Eleonora Adami, Nikita Dewani, Ning Liang, Oliver Hummel, Michael B. Muecke, Thomas B. Hildebrandt, Guido Fritsch, Lisa Schrade, Wolfram H. Zimmermann, Ivanela Kondova, Sebastian Diecke, Sebastiaan van Heesch, Norbert Hübner
Contributors: Ruiz-Orera, Jorge, Miller, Duncan C., Greiner, Johannes, Genehr, Carolin, Grammatikaki, Aliki, Blachut, Susanne, Mbebi, Jeanne, Patone, Giannino, Myronova, Anna, Adami, Eleonora, Hübner, Norbert, Zimmermann, Wolfram-Hubertus
Source: Nat Cardiovasc Res
Nature cardiovascular research 3(10), 1217-1235 (2024). doi:10.1038/s44161-024-00544-7
Nature Cardiovascular ResearchSubject Terms: Primates, Topic 1: Genes, Cells and Cell-Based Medicine, Induced Pluripotent Stem Cells, Article, Evolution, Molecular, Open Reading Frames, Ribosomes: genetics, Species Specificity, Open Reading Frames: genetics, Animals, Humans, Myocytes, Cardiac, Primates: genetics, Cells, Cultured, Gene Expression Profiling, Gene Expression Profiling: methods, Protein Biosynthesis: genetics, Myocytes, Cardiac: metabolism, Cardiovascular and Metabolic Diseases, Protein Biosynthesis, Induced Pluripotent Stem Cells: metabolism, Technology Platforms, Transcriptome, Ribosomes, Ribosomes: metabolism, Topic 2: Molecular Processes and Therapies
File Description: application/pdf
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9Academic Journal
Authors: Zotano, Guerrero, Allweis, Tanir T.M., Foerster, Robert, Palmieri, Carlo, Gluz, Oleg, Chia, Stephen, Sotiriou, Christos, Bianchini, Giampaolo
Source: Cancer treatment reviews, 147
Subject Terms: Imagerie médicale, radiologie, tomographie, Cancérologie, Humans, Breast Neoplasms -- genetics -- drug therapy -- pathology -- surgery -- therapy -- metabolism, Female, Neoadjuvant Therapy -- methods, Erb-b2 Receptor Tyrosine Kinases -- metabolism, Receptors, Estrogen -- metabolism, Progesterone -- metabolism, Neoplasm Recurrence, Local -- genetics, Prognosis, Gene Expression Profiling -- methods, 21-gene assay, Breast cancer, Core biopsy, Multigene assay, Neoadjuvant therapy, Oncotype DX, Recurrence Score
File Description: 1 full-text file(s): application/pdf
Relation: uri/info:doi/10.1016/j.ctrv.2026.103161; uri/info:pii/S0305737226000757; uri/info:pmid/42218834; uri/info:scp/105040558410; https://dipot.ulb.ac.be/dspace/bitstream/2013/412047/1/doi_395691.pdf
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10Academic Journal
Authors: Yousefi, Behnam, Schaub, Darius P, Khatri, Robin, Kaiser, Nico, Kuehl, Malte, Ly, Cedric, Puelles, Victor G, Huber, Tobias B, Prinz, Immo, Krebs, Christian F, Panzer, Ulf, Bonn, Stefan
Source: Yousefi, B, Schaub, D P, Khatri, R, Kaiser, N, Kuehl, M, Ly, C, Puelles, V G, Huber, T B, Prinz, I, Krebs, C F, Panzer, U & Bonn, S 2026, 'Scale : unsupervised multiscale domain identification in spatial omics data', Nucleic Acids Research, vol. 54, no. 1, gkaf1456. https://doi.org/10.1093/nar/gkaf1456
Subject Terms: Animals, Mice, Single-Cell Analysis/methods, Algorithms, Brain/metabolism, Humans, Transcriptome/genetics, Kidney/metabolism, Deep Learning, Gene Expression Profiling/methods, Unsupervised Machine Learning, Computational Biology/methods
Relation: info:eu-repo/semantics/altIdentifier/pmid/41495880; info:eu-repo/semantics/altIdentifier/pissn/0305-1048; info:eu-repo/semantics/altIdentifier/eissn/1362-4962
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11Academic Journal
Authors: Mishra, Neha, Kimmig, Franziska, Vandeputte, Doris, Talevi, Valentina, De Commer, Lindsey, Verspecht, Chloe, Vich Vila, Arnau, El-Sayed Moustafa, Julia S, Kreft, Lukasz, Botzki, Alexander, El Darzi, Youssef, Proost, Sebastian, Devolder, Lindsay, Wang, Dongmeng, Bernardes, Joana P, Aziz, N Ahmad, Franke, Andre, Schreiber, Stefan, Dermitzakis, Emmanouil T, Vieira-Silva, Sara, Falony, Gwen, Small, Kerrin S, Breteler, Monique M B, Schultze, Joachim L, Raes, Jeroen, Rosenstiel, Philip, Andersen, Vibeke
Source: Mishra, N, Kimmig, F, Vandeputte, D, Talevi, V, De Commer, L, Verspecht, C, Vich Vila, A, El-Sayed Moustafa, J S, Kreft, L, Botzki, A, El Darzi, Y, Proost, S, Devolder, L, Wang, D, Bernardes, J P, Aziz, N A, Franke, A, Schreiber, S, Dermitzakis, E T, Vieira-Silva, S, Falony, G, Small, K S, Breteler, M M B, Schultze, J L, Raes, J, Rosenstiel, P, SYSCID Consortium & Andersen, V 2026, 'Large-scale analysis of temporal gene expression variation in peripheral blood', Nature Communications, vol. 17, 6992 . https://doi.org/10.1038/s41467-026-73218-6
Subject Terms: Humans, Female, Gene Expression Profiling/methods, Male, Transcriptome/genetics, Twins, Monozygotic/genetics, Cross-Sectional Studies, Dizygotic/genetics, Gene Expression Regulation, Adult, Genetic Variation
File Description: application/pdf
Relation: info:eu-repo/semantics/altIdentifier/pmid/42215465; info:eu-repo/semantics/altIdentifier/pissn/2041-1723; info:eu-repo/semantics/altIdentifier/eissn/2041-1723
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12Academic Journal
Authors: Robic, Annie, Hadlich, Frieder, Costa Monteiro Moreira, Gabriel, Louise Clark, Emily, Plastow, Graham, Charlier, Carole, Kühn, Christa
Contributors: EU - European Union, robic, annie, Génétique Physiologie et Systèmes d'Elevage (GenPhySE), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Ecole d'Ingénieurs de Purpan (INP - PURPAN), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Leibniz Institute for Farm Animal Biology (FBN), Biologie de la Reproduction, Environnement, Epigénétique & Développement (BREED), École nationale vétérinaire d'Alfort (ENVA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Groupe Interdisciplinaire de Génoprotéomique Appliquée (GIGA-Research), Université de Liège, Université de Liège - Gembloux, The Roslin Institute, Biotechnology and Biological Sciences Research Council (BBSRC), University of Alberta, University of Rostock, INRAE (GenPhySE and Animal Genetics division) and Institute of Genome Biology of FBN, European Project: 815668,H2020,H2020-EU.3.2.1.1., H2020-EU.3.2.3.1.,BovReg(2019), Research Institute for Farm Animal Biology (FBN), Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège), Gembloux Agro-Bio Tech Faculté universitaire des sciences agronomiques de Gembloux ( FUSAGx ), University of Rostock = Universität Rostock, Friedrich-Loeffler-Institut (FLI)
Source: RNA Biol
RNA Biology, Vol 21, Iss 1, Pp 716-738 (2024)
Robic, A, Hadlich, F, Monteiro Moreira, G C, Clark, E, Plastow, G, Charlier, C & Kuhn, C 2024, 'Innovative construction of the first reliable catalog of bovine circular RNAs', Rna biology, vol. 21, no. 1, pp. 52-74. https://doi.org/10.1080/15476286.2024.2375090Subject Terms: lariat-derived circRNA, [SDV]Life Sciences [q-bio], circular transcriptome, Genetics & genetic processes, bovine circRNAs, Sequence Analysis, RNA/methods, QH426-470, intron circle, Génétique & processus génétiques, Genetics, Animals, Molecular Biology, artificial annotation, Sequence Analysis, RNA, Gene Expression Profiling, Computational Biology, Cell Biology, RNA, Circular, Exons, Computational Biology/methods, Life sciences, artificial circRNA, Introns, 3. Good health, [SDV] Life Sciences [q-bio], RNA, Circular/genetics, Exonic circRNA, backsplicing, Sciences du vivant, Cattle, Gene Expression Profiling/methods, Transcriptome, Research Paper
File Description: application/pdf
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13Academic Journal
Authors: Matt Evans, Timothy Kendall
Source: Evans, M & Kendall, T 2024, 'Practical considerations for pathological diagnosis and molecular profiling of cholangiocarcinoma : an expert review for best practices', Expert Review of Molecular Diagnostics, vol. 24, no. 5, pp. 393-408. https://doi.org/10.1080/14737159.2024.2353696
Subject Terms: High-Throughput Nucleotide Sequencing/methods, Cholangiocarcinoma/diagnosis, Bile Duct Neoplasms/diagnosis, Molecular Diagnostic Techniques/standards, Gene Expression Profiling, Biopsy, High-Throughput Nucleotide Sequencing, Precision Medicine/methods, Cholangiocarcinoma, Bile Duct Neoplasms, Molecular Diagnostic Techniques, Biomarkers, Tumor, Humans, Biomarkers, Tumor/genetics, Gene Expression Profiling/methods, Precision Medicine
File Description: application/vnd.openxmlformats-officedocument.wordprocessingml.document
Access URL: https://pubmed.ncbi.nlm.nih.gov/38752560
https://www.pure.ed.ac.uk/ws/files/441776294/Manuscript-CEN_006_Genomic_Testting_EOR_05022_Timothy_Kendall.docx
https://doi.org/10.1080/14737159.2024.2353696
https://www.research.ed.ac.uk/en/publications/35b67914-0c25-4c11-8828-9cd52a43021d
https://hdl.handle.net/20.500.11820/35b67914-0c25-4c11-8828-9cd52a43021d -
14Academic Journal
Authors: Emilie Gueguen, Yasser Morsy, Céline Mamie, Alain Schoepfer, Catherine Saner, Luc Biedermann, Alex Straumann, Andrea Kreienbühl, Michael Scharl, Marcin Wawrzyniak
Contributors: Swiss EoE Cohort Study Group, Aepli, P., Biedermann, L., Biral, R., Blanchard, C., Botteselle, L., Borovicka, J., Buetikofer, S., Burri, E., Diebold, J., Eckhold, A., Franke, A., Frei, M., Greuter, T., Hasler, C., Jochum, W., Kilchmann, T., Koller, S., Kreienbühl, A., Netzer, P., Pelzer, C., Reichhart, G., Ristorcelli, E., Rogler, G., Rossel, J.B., Safroneeva, E., Saner, C., Senn, J.D., Schoepfer, A., Schreiner, P., Sempoux, C., Simon, D., Simon, H.U., Straumann, A., Trelle, S., Weber, A., Willi, N., Zwahlen, M.
Source: Gut
Gut, vol. 73, no. 7, pp. 1076-1086Subject Terms: Male, Adult, Adolescent, Biopsy, Gene Expression Profiling, Eosinophilic Esophagitis, Middle Aged, 3. Good health, Oesophagus, Young Adult, Esophagus, Eosinophilic Esophagitis/genetics, Eosinophilic Esophagitis/pathology, Eosinophilic Esophagitis/diagnosis, Humans, Female, Transcriptome, Esophagus/pathology, Gene Expression Profiling/methods, Case-Control Studies, oesophageal disease, oesophageal disorders, oesophagitis
File Description: application/pdf
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15Academic Journal
Authors: Sokhna Haissatou Diaw, Sylvie Delcambre, Christoph Much, Fabian Ott, Vladimir S. Kostic, Agata Gajos, Alexander Münchau, Simone Zittel, Hauke Busch, Anne Grünewald, Christine Klein, Katja Lohmann
Source: Neurogenetics, 25 (2), 141-147 (2024-04)
Linked Full TextSubject Terms: Male, Adult, Gene Expression, Expression, Genetics & genetic processes, Biomarkers/metabolism, Cellular and Molecular Neuroscience, Génétique & processus génétiques, Genetics, Humans, THAP1 protein, human, Dystonia/genetics, Genetics (clinical), Cells, Cultured, Nuclear Proteins/metabolism, Fibroblasts/metabolism, DNA-Binding Proteins/metabolism, Gene Expression Profiling, Nuclear Proteins, THAP1, Fibroblasts, Middle Aged, Life sciences, Gene Expression/genetics, Nuclear Proteins/genetics, DNA-Binding Proteins, qPCR, Dystonia, Apoptosis Regulatory Proteins/genetics, Mutation, Sciences du vivant, Female, Gene Expression Profiling/methods, Apoptosis Regulatory Proteins, Transcriptome, DNA-Binding Proteins/genetics, Biomarkers
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16Academic Journal
Authors: Janssen M. Kotah, Thomas Rust, Hilmar R. J. van Weering, Janneke Bosma, Amber L. Woudstra, Susanne M. Kooistra, Bart J. L. Eggen
Source: Commun Biol
Subject Terms: Cell Nucleus, Neurons, Gene Expression Profiling, Single-Cell Analysis/methods, Neurons/metabolism, Brain, Article, Microglia/metabolism, Brain/metabolism, Humans, Microglia, Gene Expression Profiling/methods, Single-Cell Analysis, Transcriptome
Linked Full TextAccess URL: https://pubmed.ncbi.nlm.nih.gov/40696148
https://research.rug.nl/en/publications/58a646d3-4f83-42e5-98b6-e21423f76cb8
https://doi.org/10.1038/s42003-025-08518-6
https://hdl.handle.net/11370/58a646d3-4f83-42e5-98b6-e21423f76cb8 -
17Academic Journal
Authors: Ecker, Christine, Pretzsch, Charlotte, Leyhausen, Johanna, Berg, Lisa, Gurr, Caroline, Seelemeyer, Hanna, Mcalonan, Grainne, Puts, Nicolaas, Loth, Eva, Dell’aqua, Flavio, Mason, Luke, Charman, Tony, Oakley, Bethany, Bourgeron, Thomas, Beckmann, Christian, Buitelaar, Jan, Arango, Celso, Banaschewski, Tobias, Chiocchetti, Andreas, Freitag, Christine, Hattingen, Elke, Krueger-Burg, Dilja, Schmeisser, Michael, Repple, Jonathan, Reif, Andreas, Murphy, Declan
Contributors: Devauchelle, Benjamin
Source: Nat Commun
Nature Communications, 16, 1
Ecker, C, Pretzsch, C M, Leyhausen, J, Berg, L M, Gurr, C, Seelemeyer, H, McAlonan, G, Puts, N A, Loth, E, Dell'Aqua, F, Mason, L, Charman, T, Oakley, B, Bourgeron, T, Beckmann, C, Buitelaar, J K, Arango, C, Banaschewski, T, Chiocchetti, A G, Freitag, C M, Hattingen, E, Krueger-Burg, D, Schmeisser, M J, Repple, J, Reif, A & Murphy, D G 2025, 'Transcriptomic decoding of surface-based imaging phenotypes and its application to pharmacotranscriptomics', Nature Communications, vol. 16, 6727. https://doi.org/10.1038/s41467-025-61927-3
Nature CommunicationsSubject Terms: Male, Receptors, GABA-A/metabolism, Gene Expression Profiling, [SCCO.NEUR] Cognitive science/Neuroscience, Brain, Neuroimaging, Transcriptome/genetics, Positron-Emission Tomography/methods, Brain/diagnostic imaging, Receptors, GABA-A, Article, Phenotype, Positron-Emission Tomography, Medical Neuroscience - Development and lifelong plasticity, Humans, Neuroimaging/methods, Female, Gene Expression Profiling/methods, Transcriptome, Biophysical models
File Description: application/pdf
Linked Full TextAccess URL: https://pubmed.ncbi.nlm.nih.gov/40691132
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/321858
https://repository.ubn.ru.nl//bitstream/handle/2066/321858/321858.pdf
https://hdl.handle.net/2066/321858
https://pasteur.hal.science/pasteur-05228368v1
https://pasteur.hal.science/pasteur-05228368v1/document
https://doi.org/10.1038/s41467-025-61927-3
https://kclpure.kcl.ac.uk/ws/files/356733902/s41467-025-61927-3.pdf
https://kclpure.kcl.ac.uk/portal/en/publications/ad39ab77-9044-4e8c-9a28-74192c600c5a
https://doi.org/10.1038/s41467-025-61927-3
https://www.scopus.com/pages/publications/105011364430 -
18Academic Journal
Authors: Do, Thi T N, Block, Ines, Burton, Mark, Sørensen, Kristina P, Larsen, Martin J, Jylling, Anne Marie Bak, Ejlertsen, Bent, Lænkholm, Anne-Vibeke, Tan, Qihua, Kruse, Torben A, Thomassen, Mads
Source: Breast Cancer Res
Do, T T N, Block, I, Burton, M, Sørensen, K P, Larsen, M J, Jylling, A M B, Ejlertsen, B, Lænkholm, A-V, Tan, Q, Kruse, T A & Thomassen, M 2025, 'Multi-transcriptomics predicts clinical outcome in systemically untreated breast cancer patients with extensive follow-up', Breast Cancer Research, vol. 27, 133. https://doi.org/10.1186/s13058-025-02061-2Subject Terms: RNA, Messenger/genetics, Adult, Breast Neoplasms, Breast Neoplasms/genetics, Local/genetics, Long Noncoding/genetics, Biomarkers, Tumor, Humans, RNA, Messenger, RNA, Long Noncoding/genetics, Aged, Neoplastic, Research, Gene Expression Profiling, Middle Aged, Prognosis, Gene Expression Regulation, Neoplastic, MicroRNAs/genetics, MicroRNAs, Neoplasm Recurrence, Gene Expression Regulation, Tumor/genetics, RNA, Messenger/genetics, Female, RNA, Long Noncoding, Gene Expression Profiling/methods, Biomarkers, Tumor/genetics, Neoplasm Recurrence, Local/genetics, Neoplasm Recurrence, Local, Transcriptome, Biomarkers, Follow-Up Studies
File Description: application/pdf
Access URL: https://pubmed.ncbi.nlm.nih.gov/40665339
https://portal.findresearcher.sdu.dk/da/publications/2e736cc8-0904-481b-98d7-dd61acef996d
https://findresearcher.sdu.dk/ws/files/293178133/s13058-025-02061-2.pdf
https://doi.org/10.1186/s13058-025-02061-2
https://portal.findresearcher.sdu.dk/da/publications/2e736cc8-0904-481b-98d7-dd61acef996d
https://doi.org/10.1186/s13058-025-02061-2 -
19Academic Journal
Authors: Bin Lian, Haohui Zhang, Tao Wang 0082, Yongtian Wang, Xuequn Shang 0001, N. Ahmad Aziz, Jialu Hu
Source: Brief Bioinform
Briefings in bioinformatics 26(4), bbaf309 (2025). doi:10.1093/bib/bbaf309Linked Full TextSubject Terms: gene functional modules, Gene Expression Profiling, Computational Biology, Gene Expression Profiling: methods, Single-Cell Analysis: methods, Computational Biology: methods, single-cell RNA sequencing, Problem Solving Protocol, Humans, Animals, Gene Regulatory Networks, gene coexpression networks, Single-Cell Analysis, Transcriptome, linear mixed model, Algorithms
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20Academic Journal
Authors: Shi, Mengnan, Méar, Loren, Karlsson, Max, Álvez, María Bueno, Digre, Andreas, Schutten, Rutger, Katona, Borbala, Vuu, Jimmy, Lindström, Emil, Hikmet, Feria, Jin, Han, Yuan, Meng, Li, Xiangyu, Yang, Hong, Song, Xiya, Sjöstedt, Evelina, Edfors, Fredrik, Oksvold, Per, von Feilitzen, Kalle, Zwahlen, Martin, Forsberg, Mattias, Johansson, Fredric, Mulder, Jan, Hökfelt, Tomas, Luo, Yonglun, Butler, Lynn, Zhong, Wen, Mardinoglu, Adil, Sivertsson, Åsa, Ponten, Fredrik, Fagerberg, Linn, Lindskog, Cecilia, Uhlén, Mathias, Zhang, Cheng
Source: Genome Biol
Genome Biology, Vol 26, Iss 1, Pp 1-21 (2025)
Shi, M, Méar, L, Karlsson, M, Álvez, M B, Digre, A, Schutten, R, Katona, B, Vuu, J, Lindström, E, Hikmet, F, Jin, H, Yuan, M, Li, X, Yang, H, Song, X, Sjöstedt, E, Edfors, F, Oksvold, P, von Feilitzen, K, Zwahlen, M, Forsberg, M, Johansson, F, Mulder, J, Hökfelt, T, Luo, Y, Butler, L, Zhong, W, Mardinoglu, A, Sivertsson, Å, Ponten, F, Fagerberg, L, Lindskog, C, Uhlén, M & Zhang, C 2025, 'A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics', Genome Biology, vol. 26, 152. https://doi.org/10.1186/s13059-025-03616-4
Shi, M, Méar, L, Karlsson, M, Álvez, M B, Digre, A, Schutten, R, Katona, B, Vuu, J, Lindström, E, Hikmet, F, Jin, H, Yuan, M, Li, X, Yang, H, Song, X, Sjöstedt, E, Edfors, F, Oksvold, P, von Feilitzen, K, Zwahlen, M, Forsberg, M, Johansson, F, Mulder, J, Hökfelt, T, Luo, Y, Butler, L, Zhong, W, Mardinoglu, A, Sivertsson, Å, Ponten, F, Fagerberg, L, Lindskog, C, Uhlén, M & Zhang, C 2025, 'A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics', Genome Biology, vol. 26, no. 1, 152, pp. 152. https://doi.org/10.1186/s13059-025-03616-4Subject Terms: QH301-705.5, Cell- och molekylärbiologi, Bioinformatics and Computational Biology, QH426-470, Medical Genetics and Genomics, Human Protein Atlas, Database, Medicinsk bioteknologi (Inriktn. mot cellbiologi (inkl. stamcellsbiologi), molekylärbiologi, mikrobiologi, biokemi eller biofarmaci), Single-cell, Gene expression mapping, Cell type classification, Genetics, Humans, Medical Biotechnology (Focus on Cell Biology, (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy), Biology (General), Gene Expression Profiling, Single-Cell Analysis/methods, Medicinsk genetik och genomik, Bioinformatik och beräkningsbiologi, Organ Specificity, Utvecklingsbiologi, Gene Expression Profiling/methods, Single-Cell Analysis, Transcriptome, Cell and Molecular Biology, Developmental Biology
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Access URL: https://pubmed.ncbi.nlm.nih.gov/40462185
https://doaj.org/article/2797400ecc594732981eaabec3a91d79
https://kclpure.kcl.ac.uk/ws/files/348108749/s13059-025-03616-4.pdf
https://www.scopus.com/pages/publications/105007441526
https://kclpure.kcl.ac.uk/portal/en/publications/bed9dcfb-6c9c-4b79-a1b7-6d59b223f227
https://doi.org/10.1186/s13059-025-03616-4
http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-214912
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https://pure.au.dk/portal/en/publications/a795bd4b-f524-40c5-bf34-bc0c21055090
https://www.scopus.com/pages/publications/105007441526
https://doi.org/10.1186/s13059-025-03616-4