ZigZagFuzz: Interleaved Fuzzing of Program Options and Files

Authors: Lee, Ahcheong, Choi, Youngseok, Hong, Shin, Kim, Yunho, Cho, Kyutae, Kim, Moonzoo

Source: ACM Transactions on Software Engineering and Methodology. 34(2):1-31

Availability: http://dl.acm.org/doi/10.1145/3697014

A flexible ChIP-sequencing simulation toolkit

Authors: Zheng, An, Lamkin, Michael, Qiu, Yutong, Ren, Kevin, Goren, Alon, Gymrek, Melissa

Source: BMC Bioinformatics. 22(1)

Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Genetics (rcdc), Human Genome (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Chromatin Immunoprecipitation Sequencing (mesh), Computer Simulation (mesh), Genome (mesh), High-Throughput Nucleotide Sequencing (mesh), Models, Statistical (mesh), Sequence Analysis, DNA (mesh), Software (mesh), Bioinformatics, Epigenomics, ChIP-sequencing, Simulation tool, Command-line program, Models, Statistical (mesh), Sequence Analysis, DNA (mesh), Genome (mesh), Computer Simulation (mesh), Software (mesh), High-Throughput Nucleotide Sequencing (mesh), Chromatin Immunoprecipitation Sequencing (mesh), Bioinformatics, ChIP-sequencing, Command-line program, Epigenomics, Simulation tool, Chromatin Immunoprecipitation Sequencing (mesh), Computer Simulation (mesh), Genome (mesh), High-Throughput Nucleotide Sequencing (mesh), Models, Statistical (mesh), Sequence Analysis, DNA (mesh), Software (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 46 Information and computing sciences (for-2020), 49 Mathematical sciences (for-2020)

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/39r2b3b7
https://escholarship.org/content/qt39r2b3b7/qt39r2b3b7.pdf

CLI-mate : an interface generator for command line programs

Authors: Tatum, Zuotian, den Dunnen, Johan, Laros, Jeroen F. J.

Source: Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences. :114-115

Availability: http://dl.acm.org/doi/10.1145/2166896.2166924

Real-time Collaboration with Node.js

Authors: Hudson, Shane^Aff1

Contributors: Hudson, Shane

Source: JavaScript Creativity : Exploring the Modern Capabilities of JavaScript and HTML5. :105-112

chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

Authors: Man-Ling Lee, Ignacio Aliagas, Jianwen A. Feng, Thomas Gabriel, T. J. O’Donnell, Benjamin D. Sellers, Bernd Wiswedel, Alberto Gobbi

Source: Journal of Cheminformatics, Vol 9, Iss 1, Pp 1-14 (2017)

Subject Terms: Command line program, Substructure identification, Property calculation, SAR, QSPR model, Conformation analysis, Information technology, T58.5-58.64, Chemistry, QD1-999

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13321-017-0228-9; https://doaj.org/toc/1758-2946

Access URL: https://doaj.org/article/edfb9c52e3044076802ecdada87add4f

Appendix

Authors: Blanchini, Franco^Aff12, Miani, Stefano^Aff13

Contributors: Başar, Tamer, editor^Aff1, Åström, Karl Johan, editor^Aff2, Chen, Han-Fu, editor^Aff3, Helton, William, editor^Aff4, Isidori, Alberto, editor^Aff5, Kokotović, Petar V., editor^Aff6, Kurzhanski, Alexander, editor^Aff7, Poor, H. Vincent, editor^Aff8, Soner, Mete, editor^Aff9, Blanchini, Franco^Aff10, Miani, Stefano^Aff11

Source: Set-Theoretic Methods in Control. :451-458

Hyperwave — An Advanced Hypermedia Document Management System

Authors: Lennon, Jennifer A.^Aff2

Contributors: Lennon, Jennifer A.^Aff1

Source: Hypermedia Systems and Applications : World Wide Web and Beyond. :111-126

Atom-Atom-Path similarity and Sphere Exclusion clustering: tools for prioritizing fragment hits

Authors: Gobbi, Alberto, Giannetti, Chen, Huifen, Lee, Man-Ling

Source: Journal of Cheminformatics. December 2015 7(1):1-11

PyGMT: A Python interface for the Generic Mapping Tools

Authors: Uieda, Leonardo (5259184), Tian, Dongdong (8793422), Leong, Wei Ji (8793425), Toney, Liam (8793428), Schlitzer, William (10149224), Grund, Michael (10149227), Newton, Tyler (10149230), Ziebarth, Malte (10149233), Jones, Meghan (10149236), Wessel, Paul (8793431)

Subject Terms: Genetics, Neuroscience, Ecology, Mental Health, Computational Biology, Information Systems not elsewhere classified, geophysical data, publication quality maps, Generic Mapping Tools, processing geospatial, Pythonic interface, figure, Earth Sciences, Generic Mapping Tools PyGMT, Python interface, command-line program

Relation: https://figshare.com/articles/software/PyGMT_A_Python_interface_for_the_Generic_Mapping_Tools/14039051

Availability: https://doi.org/10.5281/zenodo.4522136

a

Contributors: The Pennsylvania State University CiteSeerX Archives

Source: http://www.jcheminf.com/content/pdf/s13321-015-0056-8.pdf.

Subject Terms: Command line program, Clustering, Fragment screening, Hit prioritization, Similarity, Sphere exclusion Background

File Description: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.696.5993

Availability: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.696.5993
http://www.jcheminf.com/content/pdf/s13321-015-0056-8.pdf