Advancing High-Throughput Cellular Atomic Force Microscopy with Automation and Artificial Intelligence

Συγγραφείς: Thomas- -Chemin, Ophélie, Janel, Sébastien, Boumehdi, Zeyd, Séverac, Childérick, Trevisiol, Emmanuelle, Dague, Etienne, Duprés, Vincent

Συνεισφορές: DAGUE, Etienne, Équipe Ingénierie pour les sciences du vivant (LAAS-ELIA), Laboratoire d'analyse et d'architecture des systèmes (LAAS), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT), Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 (CIIL), Institut Pasteur de Lille, Pasteur Network (Réseau International des Instituts Pasteur)-Pasteur Network (Réseau International des Instituts Pasteur)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire CHU Lille (CHRU Lille)-Centre National de la Recherche Scientifique (CNRS), Geroscience and rejuvenation research center (RESTORE), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-EFS-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Toulouse Biotechnology Institute (TBI), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Πηγή: ACS Nano. 19:5045-5062

Θεματικοί όροι: AFM data processing, [SDV.IB] Life Sciences [q-bio]/Bioengineering, MESH: Microscopy, MESH: Humans, High-throughput AFM, Atomic Force, Mechanical properties, Cellular analysis, Microscopy, Atomic Force, Artificial intelligence (AI), Bio-AFM, Automation, MESH: Automation, Artificial Intelligence, Atomic force microscopy (AFM), Machine learning, MESH: Artificial Intelligence, Humans, Animals, [SDV.IB]Life Sciences [q-bio]/Bioengineering

Περιγραφή αρχείου: application/pdf

Σύνδεσμος πρόσβασης: https://pubmed.ncbi.nlm.nih.gov/39883411
https://ut3-toulouseinp.hal.science/hal-04956507v1
https://ut3-toulouseinp.hal.science/hal-04956507v1/document
https://doi.org/10.1021/acsnano.4c07729

OpenFovea: open-source AFM data processing software

Συγγραφείς: Roduit, Charles, primary, Saha, Bhaskar, additional, Alonso-Sarduy, Livan, additional, Volterra, Andrea, additional, Dietler, Giovanni, additional, Kasas, Sandor, additional

Πηγή: Nature Methods. 2012/07/30

The Young’s Modulus as a Mechanical Biomarker in AFM Experiments: A Tool for Cancer Diagnosis and Treatment Monitoring

Συγγραφείς: Stylianos Vasileios Kontomaris, Anna Malamou, Andreas Stylianou

Πηγή: Sensors, Vol 25, Iss 11, p 3510 (2025)

Θεματικοί όροι: mechanical distributions, cancer diagnosis, combined therapies, contact mechanics, AFM data processing, Chemical technology, TP1-1185

Περιγραφή αρχείου: electronic resource

Relation: https://www.mdpi.com/1424-8220/25/11/3510; https://doaj.org/toc/1424-8220

Σύνδεσμος πρόσβασης: https://doaj.org/article/170741868f0a4d75831050afe3f55306

TopoStats – A program for automated tracing of biomolecules from AFM images

Συγγραφείς: Beton, Joseph G. ^{a, b}, Moorehead, Robert ^{c, d}, Helfmann, Luzie ^{a, e}, Gray, Robert ^{a, e}, Hoogenboom, Bart W. ^e, Joseph, Agnel Praveen ^a, Topf, Maya ^{a, b}, Pyne, Alice L.B. ^{d, e, ⁎}

Πηγή: In Methods September 2021 193:68-79

Study of the Effects of Different Factors on Crystal Growth from Solution: Data of Atomic Force Microscopy.

Συγγραφείς: Piskunova, N. N.

Πηγή: Geochemistry International; Jun2024, Vol. 62 Issue 6, p634-646, 13p

Θεματικοί όροι: Atomic force microscopy, Crystal growth, Screw dislocations, Edge dislocations, Nanoindentation

AFM visualization of immobilized horseradish peroxidase during its catalytic cycle.

Συγγραφείς: Ivanova IA; Institute of Biomedical Chemistry, Moscow, Russia., Ershova MO; Institute of Biomedical Chemistry, Moscow, Russia., Kolesnichenko AV; Institute of Biomedical Chemistry, Moscow, Russia., Archakov AI; Institute of Biomedical Chemistry, Moscow, Russia., Pleshakova TO; Institute of Biomedical Chemistry, Moscow, Russia.

Πηγή: Biomeditsinskaia khimiia [Biomed Khim] 2026 Jul; Vol. 72 (3), pp. 188-197.

Τύπος έκδοσης: Journal Article

Στοιχεία περιοδικού: Publisher: Rossiĭskai︠a︡ akademii︠a︡ medit︠s︡inskikh nauk Country of Publication: Russia (Federation) NLM ID: 101196966 Publication Model: Print Cited Medium: Print ISSN: 2310-6972 (Print) Linking ISSN: 23106905 NLM ISO Abbreviation: Biomed Khim Subsets: MEDLINE

Ιατρικοί όροι (MeSH): Enzymes, Immobilized*/chemistry, Horseradish Peroxidase/chemistry ; Hydrogen Peroxide/chemistry ; Microscopy, Atomic Force ; Biocatalysis

Artificial Intelligence and Machine Learning in AFM-Based Nanomechanical Biomarkers: From Force Curves and Stiffness Maps to Disease Classification and Treatment Monitoring.

Συγγραφείς: Stylianou, Andreas

Πηγή: Applied Sciences (2076-3417); Aug2026, Vol. 16 Issue 15, p7821, 40p

Θεματικοί όροι: Atomic force microscopy, Artificial intelligence, Machine learning, Tumors, Nosology, Treatment effectiveness, Biomarkers, Fibrosis

Self-consistent autocorrelation for finite-area bias correction in roughness measurement

Συγγραφείς: Nečas, David

Όροι ευρετηρίου: scanning probe microscopy, roughness, autocorrelation, bias

Σύνδεσμος: http://hdl.handle.net/11012/250000
https://iopscience.iop.org/article/10.1088/2631-8695/ad5302
Engineering Research Express
https://iopscience.iop.org/article/10.1088/2631-8695/ad5302

Machine learning-based multidomain processing for texture-based image segmentation and analysis.

Συγγραφείς: Borodinov, Nikolay, Tsai, Wan-Yu, Korolkov, Vladimir V., Balke, Nina, Kalinin, Sergei V., Ovchinnikova, Olga S.

Πηγή: Applied Physics Letters; 1/27/2020, Vol. 116 Issue 4, p1-5, 5p, 3 Color Photographs, 1 Graph

Θεματικοί όροι: Image segmentation, Image processing, Image analysis, Feature extraction, Atomic force microscopy, Molecular orientation

Sensitive and Spatially‐Resolved Electrochemiluminescence via Micropatterning.

Συγγραφείς: Shao, Yuliang, Starikova, Tatiana, Xi, Mengzhen, Balli, Maria Vittoria, Sciuto, Emanuele Luigi, Giagu, Gabriele, Paratore, Vincenzo, Corsaro, Carmelo, Fazio, Enza, Conoci, Sabrina, Prodi, Luca, Valenti, Giovanni, Levkin, Pavel A.

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Θεματικοί όροι: Electrochemiluminescence, Gold electrodes, Biosensors, SARS-CoV-2, Immunoassay, Silica nanoparticles

AFM-net: machine learning acceleration of atomic force microscopy nanometrology from scarce data and fast scans.

Συγγραφείς: Natinsky, Eva, Khan, Ryan M., Wang, Qianshu, Morris, David, Cullinan, Michael, Dingreville, Rémi

Πηγή: NPJ Computational Materials; 6/8/2026, Vol. 12 Issue 1, p1-13, 13p

Θεματικοί όροι: Atomic force microscopy, Machine learning, Scanning tunneling microscopy, Data pipelining, Imaging systems, Image reconstruction

Beyond Transconductance: Cell‐Polymer Coupling Determines Fidelity in Action Potential Recording via Electrolyte‐Gated Polymer Transistors.

Συγγραφείς: Zemignani, Giulia Zoe, Mancinelli, Elena, Tullii, Gabriele, Khudiakov, Aleksandr, Bortolotti, Cristiano, Tanwar, Shubham, Schwartz, Peter J., Sala, Luca, Antognazza, Maria Rosa, Caironi, Mario, Kyndiah, Adrica

Πηγή: Advanced Science; May2026, Vol. 13 Issue 30, p1-11, 11p

Θεματικοί όροι: Action potentials, Cell adhesion, Organic field-effect transistors, Signal integrity (Electronics), Biocompatibility, Electrophysiology

Hormonally responsive bovine oviductal organoids recapitulate native oviductal secretions and enhance sperm capacitation.

Συγγραφείς: Navarro-Serna, Sergio, Romero-Aguirregomezcorta, Jon, Hernández-Díaz, Nathaly, Ferrero-Micó, Ana, Coy, Pilar, Pérez-García, Vicente

Πηγή: Cellular & Molecular Life Sciences; 4/21/2026, Vol. 83 Issue 1, p1-15, 15p

Θεματικοί όροι: Organoids, Estradiol, Body fluids, Sex hormones, Spermatozoa, Reproductive technology, Proteomics, Progesterone

Biomechanical anticoagulation by spherical platelets in extracorporeal systems.

Συγγραφείς: Ji, Rui, Li, Yongjian, Li, Jiang, Chen, Haosheng

Πηγή: Proceedings of the National Academy of Sciences of the United States of America; 4/7/2026, Vol. 123 Issue 14, p1-10, 25p

Θεματικοί όροι: Hemodialysis, Blood coagulation, Artificial blood circulation, Molecular dynamics, Mechanotransduction (Cytology), Anticoagulants, Integrins

Dry Sliding Adhesion and Wear Behavior of LPBF Ti-6Al-4V ELI (Grade 23): Influence of In-Layer Remelting on Microstructure, Surface Integrity, and Tribolayer Stability.

Συγγραφείς: Birleanu, Corina, Cosma, Cosmin, Udroiu, Razvan, Popister, Florin, Balc, Nicolae, Goia, Horea-Ștefan, Pustan, Marius, Suciu, Ramona-Crina

Πηγή: Applied Sciences (2076-3417); Apr2026, Vol. 16 Issue 7, p3406, 31p

Θεματικοί όροι: Microstructure, Sliding wear, Surface texture, Dry friction, Titanium alloys, Selective laser melting, Surface interactions

AFM-derived cytoskeletal mechanics reveal ethanol-induced injury and vitamin C-mediated repair in SH-SY5Y cells.

Συγγραφείς: Wang, Xingyue, Jia, Baohua, Wang, Zuobin, Qu, Kaige

Πηγή: Analytical Methods; 3/26/2026, Vol. 18 Issue 12, p2407-2414, 8p

Self-consistent autocorrelation for finite-area bias correction in roughness measurement

Συγγραφείς: Nečas, David

Θεματικοί όροι: Physics - Data Analysis, Statistics and Probability

Σύνδεσμος πρόσβασης: http://arxiv.org/abs/2308.11304

FRAME (Force Review Automation Environment): MATLAB-based AFM data processor

Συγγραφείς: Partola, Kostyantyn R., Lykotrafitis, George ^⁎

Πηγή: In Journal of Biomechanics 3 May 2016 49(7):1221-1224

Effect of pH on the Formation, Disintegration and Antioxidant Activity of Mung Bean Protein Fibrils.

Συγγραφείς: Tian, Yike, Zhang, Shuning, Huang, Weining, Li, Ning, Liang, Li

Πηγή: Antioxidants; Dec2025, Vol. 14 Issue 12, p1399, 15p

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Enhanced Microwave Commutation Quality Factor of Tunable Capacitors Based on SrTiO 3 Thin Films.

Συγγραφείς: Tumarkin, Andrei, Bogdan, Alexey, Sapego, Eugeny, Korepanov, Oleg, Karamov, Artem

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Θεματικοί όροι: Quality factor, Strontium titanate, Thin films, Ferroelectric crystals, Dielectric relaxation, Microwaves, Capacitors, Magnetron sputtering