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1Academic Journal
Authors: E. S. Balakirev, Е. С. Балакирев
Contributors: This study received budget support within the framework of the Research Study entitled “World Ocean biodiversity: taxonomy, barcoding, phylogenetics, reproductive and evolutionary biology, biogeography” (State registry no. 121082600036-9, Ministry of Science and Higher Education of the Russian Federation) conducted by A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia.
Source: Vavilov Journal of Genetics and Breeding; Том 29, № 2 (2025); 259-267 ; Вавиловский журнал генетики и селекции; Том 29, № 2 (2025); 259-267 ; 2500-3259 ; 10.18699/vjgb-25-20
Subject Terms: генетическая дивергенция, Protosalanx, taxonomic misidentification, mitochondrial genomes, CytB, single-marker sequences, genetic divergence, таксономические ошибки идентификации, митохондриальные геномы, маркерные последовательности
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Relation: https://vavilov.elpub.ru/jour/article/view/4544/1933; Altschul S., Gish W., Miller W., Myers E., Lipman D. Basic local alignment search tool. J Mol Biol. 1990;215:403-410. doi 10.1016/ S0022-2836(05)80360-2; Balakirev E.S. Recombinant mitochondrial genomes reveal recent interspecific hybridization between invasive salangid fishes. Life. 2022;5:661. doi 10.3390/life12050661; Balakirev E.S., Saveliev P.A., Ayala F.J. Complete mitochondrial genomes of the Cherskii’s sculpin Cottus czerskii and Siberian taimen Hucho taimen reveal GenBank entry errors: incorrect species identification and recombinant mitochondrial genome. Evol Bioinform Online. 2017;13:1176934317726783. doi 10.1177/1176934317726783; Balakirev E.S., Kravchenko A.Y., Semenchenko A.A. Genetic evidence for a mixed composition of the genus Myoxocephalus (Cottoidei: Cottidae) necessitates generic realignment. Genes. 2020;11:1071. doi 10.3390/genes11091071; Balakirev E.S., Sharina S.N., Balanov A.A. Misidentified mitogenomes of two Lycodes species (Perciformes: Zoarcidae) in GenBank. Russ J Genet. 2024;60(10):1375-1382. doi 10.1134/S1022795424700911; Betancur-R R., Wiley E.O., Arratia G., Acero A., Bailly N., Miya M., Lecointre G., Ortí G. Phylogenetic classification of bony fishes. BMC Evol Biol. 2017;17:162. doi 10.1186/s12862-017-0958-3; Botero-Castro F., Delsuc F., Douzery E.J.P. Thrice better than once: quality control guidelines to validate new mitogenomes. Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):449-454. doi 10.3109/19401736.2014.900666; Cheng J., Ma G.-Q., Song N., Gao T.-X. Complete mitochondrial genome sequence of bighead croaker Collichthys niveatus (Perciformes, Sciaenidae): a mitogenomic perspective on the phylogenetic relationships of Pseudosciaeniae. Gene. 2012;491(2):210-223. doi 10.1016/j.gene.2011.09.020; Collins R.A., Boykin L.M., Cruickshank R.H., Armstrong K.F. Barcoding’s next top model: an evaluation of nucleotide substitution models for specimen identification. Methods Ecol Evol. 2012;3: 457-465. doi 10.1111/j.2041-210x.2011.00176.x; Cunha R.L., Nicastro K.R., Zardi G.I., Madeira C., McQuaid C.D., Cox C.J., Castilho R. Comparative mitogenomic analyses and gene rearrangements reject the alleged polyphyly of a bivalve genus. PeerJ. 2022;10:e13953. doi 10.7717/peerj.13953; Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-1797. doi 10.1093/nar/gkh340; Fu C., Luo J., Wu J., López J.A., Zhong Y., Lei G., Chen J. Phylogenetic relationships of salangid fishes (Osmeridae, Salanginae) with comments on phylogenetic placement of the salangids based on mitochondrial DNA sequences. Mol Phylogenet Evol. 2005;35:76-84. doi 10.1016/j.ympev.2004.11.024; Fu C., Guo L., Xia R., Li J., Lei G. A multilocus phylogeny of Asian noodlefishes Salangidae (Teleostei: Osmeriformes) with a revised classification of the family. Mol Phylogenet Evol. 2012;62(3):848- 855. doi 10.1016/j.ympev.2011.11.031; Giribet G., Wheeler W.C. On gaps. Mol Phylogenet Evol. 1999;13(1): 132-143. doi 10.1006/mpev.1999.0643; Guo L., Li J., Wang Z., Fu C. Phylogenetic relationships of noodlefishes (Osmeriformes: Salangidae) based on four mitochondrial genes. Acta Hydrobiol. 2011;35:449-459. doi 10.3724/SP.J.1035.2011.00449; Hoang D.T., Chernomor O., von Haeseler A., Minh B.Q., Vinh L.S. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 2018;35:518-522. doi 10.1093/molbev/msx281; Hofstetter V., Buyck B., Eyssartier G., Schnee S., Gindro K. The unbearable lightness of sequenced-based identification. Fungal Divers. 2019;96:243-284. doi 10.1007/s13225-019-00428-3; Houbraken J., Visagie C.M., Frisvad J.C. Recommendations to prevent taxonomic misidentification of genome-sequenced fungal strains. Microbiol Resour Ann. 2021;10:e01074-20. doi 10.1128/MRA.01074-20; Kartavtsev Y.P. Sequence divergence at mitochondrial genes in animals: applicability of DNA data in genetics of speciation and molecular phylogenetics. Mar Genomics. 2011;4(2):71-81. doi 10.1016/j.margen.2011.02.002; Kartavtsev Y.P., Rozhkovan K.V., Masalkova N.A. Phylogeny based on two mtDNA genes (Co-1, Cyt-B) among sculpins (Scorpaeniformes, Cottidae) and some other scorpionfish in the Russian Far East. Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(3):2225-2240. doi 10.3109/19401736.2014.984164; Kim D.E., Kim P., Lee H., Kim N.H., Kim D., Lee M.J., Ban Y.G., Jang B., Park J. Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea. Entomol Res. 2023;53:66-81. doi 10.1111/1748-5967.12633; Li X., Shen X., Chen X., Xiang D., Murphy R.W., Shen Y. Detection of potential problematic Cytb gene sequences of fishes in GenBank. Front Genet. 2018;9:30. doi 10.3389/fgene.2018.00030; Mohamed W.M.A., Moustafa M.A.M., Kelava S., Barker D., Matsuno K., Nonaka N., Shao R., Mans B.J., Barker S.C., Nakao R. Reconstruction of mitochondrial genomes from raw sequencing data provides insights on the phylogeny of Ixodes ticks and cautions for species misidentification. Ticks Tick Borne Dis. 2022;13(1):101832. doi 10.1016/j.ttbdis.2021.101832; Mulder K.P., Lourenço A., Carneiro M., Velo-Antón G. The complete mitochondrial genome of Salamandra salamandra (Amphibia: Urodela: Salamandridae). Mitochondrial DNA Part B. 2016;1:880- 882. doi 10.1080/23802359.2016.1253042; Nguyen L.T., Schmidt H.A., von Haeseler A., Minh B.Q. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol. 2015;32:268-274. doi 10.1093/molbev/msu300; Nielsen M.K., Wang J., Davis R., Bellaw J.L., Lyons E.T., Lear T.L., Goday C. Parascaris univalens – a victim of large-scale misidentification? Parasitol Res. 2014;113:4485-4490. doi 10.1007/s00436-014-4135-y; Nilsson R.H., Ryberg M., Kristiansson E., Abarenkov K., Larsson K.H., Koljalg U. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One. 2006;1(1):e59. doi 10.1371/journal.pone.0000059; Oleinik A.G., Skurikhina L.A., Kukhlevsky A.D. Clarification of taxonomic assignment of smelt complete mitochondrial genome: GenBank accession number KP281293.1 (NC_026566.1). Mitochondrial DNA Part B. 2019;4:1696-1697. doi 10.1080/23802359.2019.1607578; Ožana S., Dolný A., Pánek T. Nuclear copies of mitochondrial DNA as a potential problem for phylogenetic and population genetic studies of Odonata. Syst Entomol. 2022;47:591-602. doi 10.1111/syen.12550; Roberts T.R. Skeletal anatomy and classification of the neotenic Asian Salmoniform superfamily Salangoidea (icefishes or noodlefishes). Proc Califor Acad Sci. 1984;43:179-220; Rozas J., Ferrer-Mata A., Sánchez-DelBarrio J.C., Guirao-Rico S., Librado P., Ramos-Onsins S.E., Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism analysis of large datasets. Mol Biol Evol. 2017;34:3299-3302. doi 10.1093/molbev/msx248; Salvi D., Berrilli E., Garzia M., Mariottini P. Yet another mitochondrial genome of the Pacific cupped oyster: the published mitogenome of Alectryonella plicatula (Ostreinae) is based on a misidentified Magallana gigas (Crassostreinae). Front Mar Sci. 2021;8:741455. doi 10.3389/fmars.2021.741455; Sangster G., Luksenburg J.A. The published complete mitochondrial genome of the milk shark (Rhizoprionodon acutus) is a misidentified Pacific spadenose shark (Scoliodon macrorhynchos) (Chondrichthyes: Carcharhiniformes). Mitochondrial DNA Part B. 2021a;6: 828-830. doi 10.1080/23802359.2021.1884019; Sangster G., Luksenburg J.A. Sharp increase of problematic mitogenomes of birds: causes, consequences, and remedies. Genome Biol Evol. 2021b;13:evab210. doi 10.1093/gbe/evab210; Sayers E.W., Cavanaugh M., Clark K., Pruitt K.D., Sherry S.T., Yankie L., Karsch-Mizrachi I. GenBank 2023 update. Nucleic Acids Res. 2023;51:D141-D144. doi 10.1093/nar/gkac1012; Simonov E., Lisachov A., Oreshkova N., Krutovsky K.V. The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. ¬dione. Acta Herpetol. 2018;13:185-189. doi 10.13128/Acta_Herpetol-23394; Tamura K., Stecher G., Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol. 2021;38:3022-3027. doi 10.1093/molbev/msab120; Teske P.R. Mitochondrial genome announcements need to consider existing short sequences from closely related species to prevent taxonomic errors. Conserv Genet Resour. 2021;13:359-365. doi 10.1007/s12686-021-01214-7; The National Center for Biotechnology Information. Available online: https://www.ncbi.nlm.nih.gov/ (accessed on July 29, 2024); Yang Y., Sui Z., Liu K., Liu Y. The complete mitochondrial DNA sequence of Linyi small icefish (Neosalanx taihuensis). GenBank submission: 24-NOV-2020. Genbank accession number: MW291630; Zhang J., Li M., Xu M., Takita T., Wei F. Molecular phylogeny of icefish Salangidae based on complete mtDNA cytochrome b sequences, with comments on estuarine fish evolution. Biol J Linn Soc. 2007;91:325-340. doi 10.1111/j.1095-8312.2007.00785.x; Zhao L., Zhang J., Liu Z., Funk S.M., Wei F., Xu M., Li M. Complex population genetic and demographic history of the Salangid, Neosalanx taihuensis, based on cytochrome b sequences. BMC Evol Biol. 2008;8:201. doi 10.1186/1471-2148-8-201; Zhao L., Zhang J., Liu Z., Xu M., Li M. Population genetic structure and demographic history of Neosalanx jordani based on cytochrome b sequences. Biodiv Sci. 2010;18(3):251-261. doi 10.3724/SP.J.1003.2010.251; https://vavilov.elpub.ru/jour/article/view/4544
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2Academic Journal
Source: Plant varieties studying and protection; Том 15, № 4 (2019); 442-450
«Plant Varieties Studying and Protection»; Том 15, № 4 (2019); 442-450
Plant Varieties Studying and Protection; Том 15, № 4 (2019); 442-450Subject Terms: 0106 biological sciences, 577.21:631.526.32:635.621.3, Cucurbita pepo L, polymorphism, ISSR markers, genetic divergence, cluster analysis, поліморфізм ДНК, ISSR-маркери, генетична дивергенція, кластерний аналіз, 0401 agriculture, forestry, and fisheries, 04 agricultural and veterinary sciences, 01 natural sciences, полиморфизм ДНК, ISSR-маркеры, генетическая дивергенция, кластерный анализ
File Description: application/pdf
Access URL: http://journal.sops.gov.ua/article/view/189081
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3Academic Journal
Authors: Орловская, Ольга, Корень, Лидия, Хотылева, Любовь
Subject Terms: ТРИТИКАЛЕ (×TRITICOSECALE WITTMACK), ISSRИ RAPD-МАРКЕРЫ, ГЕНЕТИЧЕСКАЯ ДИВЕРГЕНЦИЯ, ГЕТЕРОЗИС, TRITICALE (× TRITICOSECALE WITTMACK)
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4
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5Academic Journal
Authors: Нгуен, Тхань, Смиряев, Анатолий, Баженова, Светлана
Subject Terms: БИОМЕТРИЯ, СРАВНЕНИЕ ГИБРИДНЫХ ФОРМ, ГЕНЕТИЧЕСКАЯ ДИВЕРГЕНЦИЯ, ВЫБОРКА РАСТЕНИЙ, ТОЧНОСТЬ ОПЫТА, ЯРОВАЯ ПШЕНИЦА
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6Academic Journal
Authors: Kириченко, В. В.
Source: Plant Breeding and Seed Production; № 105 (2014); 23-31
Селекция и семеноводство; № 105 (2014); 23-31
Селекція і насінництво; № 105 (2014); 23-31Subject Terms: 2. Zero hunger, УДК 633.15:631.527.51, Maize, heterosis, genetic divergence, UPOV, combining ability, RAPD, SSR, Кукурудза, гетерозис, генетична дивергенція, комбінаційна здатність, Kукуруза, генетическая дивергенция, комбинационная способность
File Description: application/pdf
Access URL: http://journals.uran.ua/pbsd/article/view/42039
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7Academic Journal
Source: Ecological genetics.
Subject Terms: 2. Zero hunger, ТОМАТ (SOLANUM LYCOPERSICUM L.),TOMATO (SOLANUM LYCOPERSICUM L.),ГЕНЕТИЧЕСКАЯ ДИВЕРГЕНЦИЯ,GENETIC DIVERGENCE,ГЕТЕРОЗИС,HETEROSIS,КОМБИНАЦИОННАЯ СПОСОБНОСТЬ,COMBINING ABILITY,SSRМАРКЕРЫ,SSR
File Description: text/html
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8Academic Journal
Source: Ecological genetics.
Subject Terms: ТРИТИКАЛЕ (×TRITICOSECALE WITTMACK), ISSRИ RAPD-МАРКЕРЫ, ГЕНЕТИЧЕСКАЯ ДИВЕРГЕНЦИЯ, ГЕТЕРОЗИС, TRITICALE (× TRITICOSECALE WITTMACK)
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9Academic Journal
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10Academic Journal
Source: Известия Тимирязевской сельскохозяйственной академии.
Subject Terms: БИОМЕТРИЯ, СРАВНЕНИЕ ГИБРИДНЫХ ФОРМ, ГЕНЕТИЧЕСКАЯ ДИВЕРГЕНЦИЯ, ВЫБОРКА РАСТЕНИЙ, ТОЧНОСТЬ ОПЫТА, ЯРОВАЯ ПШЕНИЦА
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11Academic Journal
Authors: Зуйкова, Е.И., Бочкарев, Н.А., Семенова, А.С., Катохин, А.В., Zuykova, Elena I., Bochkarev, Nickolai A., Semenova, Anna S., Katokhin, Alexey V.
Subject Terms: Daphnia galeata, Daphnia cucullata, морфологическая изменчивость, митохондриальная ДНК, ядерная ДНК, генетическая дивергенция, morphological variation, mitochondrial DNA, nuclear DNA, genetic divergence
Relation: 2010 3 ( 4 ); Журнал Сибирского федерального университета. Биология. Journal of Siberian Federal University. Biology.
Availability: https://elib.sfu-kras.ru/handle/2311/2250
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12
Authors: Картавцев, Юрий Федорович
Source: Успехи современной биологии. - 2013. - Т. 113, № 5. - С. 419-451
Subject Terms: ДВФУ (труды преподавателей), генетика, нуклеотидное разнообразие, филогенез, молекулярная эволюция, генетическая дивергенция, видоразнообразие
Relation: vtls:000796450; https://openrepository.ru/article?id=119280
Availability: https://openrepository.ru/article?id=119280
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13
Authors: Картавцев, Юрий Федорович
Source: Вопросы ихтиологии. - 1991. - Т. 31, № 3. - С. 487-495
Subject Terms: популяции горбуши, генетика популяций горбуши, генетическая изменчивость горбуши, генотипы (ихтиология), аллели (ихтиология), генетическая дивергенция популяций, внутрипопуляционная дифференциация (ихтиология), межпопуляционная дифференциация (ихтиология), ДВГУ (труды преподавателей), ихтиология
Relation: vtls:000283885; https://openrepository.ru/article?id=119401
Availability: https://openrepository.ru/article?id=119401
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14Electronic Resource
Изменчивость частот аллелей в пространстве и во времени в популяциях горбуши Oncorhynchus gorbuscha
Authors: Картавцев, Юрий Федорович
Source: Вопросы ихтиологии. - 1991. - Т. 31, № 3. - С. 487-495
Index Terms: популяции горбуши, генетика популяций горбуши, генетическая изменчивость горбуши, генотипы (ихтиология), аллели (ихтиология), генетическая дивергенция популяций, внутрипопуляционная дифференциация (ихтиология), межпопуляционная дифференциация (ихтиология), ДВГУ (труды преподавателей), ихтиология, статья из журнала
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15Electronic Resource
Authors: Картавцев, Юрий Федорович
Source: Успехи современной биологии. - 2013. - Т. 113, № 5. - С. 419-451
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16Electronic Resource
Additional Titles: Morphological Differentiation, Mitochondrial and Nuclear DNA Variability Between Geographically Distant Populations of Daphnia galeata and Daphnia cucullata (Anomopoda, Daphniidae)
Authors: Зуйкова, Е.И., Бочкарев, Н.А., Семенова, А.С., Катохин, А.В., Zuykova, Elena I., Bochkarev, Nickolai A., Semenova, Anna S., Katokhin, Alexey V.
Index Terms: Daphnia galeata, Daphnia cucullata, морфологическая изменчивость, митохондриальная ДНК, ядерная ДНК, генетическая дивергенция, morphological variation, mitochondrial DNA, nuclear DNA, genetic divergence, Journal Article, Published Journal Article
URL:
https://openrepository.ru/article?id=763539
2010 3 ( 4 )
Журнал Сибирского федерального университета. Биология. Journal of Siberian Federal University. Biology. -
17Electronic Resource
Additional Titles: Morphological Differentiation, Mitochondrial and Nuclear DNA Variability Between Geographically Distant Populations of Daphnia galeata and Daphnia cucullata (Anomopoda, Daphniidae)
Authors: Зуйкова, Е.И., Бочкарев, Н.А., Семенова, А.С., Катохин, А.В., Zuykova, Elena I., Bochkarev, Nickolai A., Semenova, Anna S., Katokhin, Alexey V.
Index Terms: Daphnia galeata, Daphnia cucullata, морфологическая изменчивость, митохондриальная ДНК, ядерная ДНК, генетическая дивергенция, morphological variation, mitochondrial DNA, nuclear DNA, genetic divergence, Journal Article, Published Journal Article
URL:
https://openrepository.ru/article?id=763539uri
2010 3 ( 4 )
Журнал Сибирского федерального университета. Биология. Journal of Siberian Federal University. Biology.
