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1Academic Journal
Authors: A. V. Shevchenko, V. F. Prokofiev, V. I. Konenkov, V. V. Chernykh, A. N. Trunov, А. В. Шевченко, В. Ф. Прокофьев, В. И. Коненков, В. В. Черных, А. Н. Трунов
Source: Vavilov Journal of Genetics and Breeding; Том 29, № 1 (2025); 128-134 ; Вавиловский журнал генетики и селекции; Том 29, № 1 (2025); 128-134 ; 2500-3259 ; 10.18699/vjgb-25-01
Subject Terms: неравновесное сцепление, POAG, polymorphism of toll-like receptor genes, TLR, linkage disequilibrium, ПОУГ, полиморфизм генов толл-лайк рецепторов
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Relation: https://vavilov.elpub.ru/jour/article/view/4484/1922; Akira S., Takeda K., Kaisho T. Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol. 2001;2:675-680. doi:10.1038/90609; Arbour N.C., Lorenz E., Schutte B.C., Zabner J., Kline J.N., Jones M., Frees K., Watt J.L., Schwartz D.A. TLR4 mutations are associated with endotoxin hyporesponsiveness in humans. Nat Genet. 2000; 25(2):187-191. doi:10.1038/76048; Basavarajappa D., Galindo-Romero C., Gupta V., Agudo-Barriuso M., Gupta V.B., Graham S.L., Chitranshi N. Signalling pathways and cell death mechanisms in glaucoma: insights into the molecular pathophysiology. Mol Aspects Med. 2023;94:101216. doi:10.1016/j.mam.2023.101216; Baudouin C., Kolko M., Melik-Parsadaniantz S., Messmer E.M. Inflam mation in glaucoma: from the back to the front of the eye, and beyond. Prog Retin Eye Res. 2021;83:100916. doi:10.1016/j.preteyeres.2020.100916; Chaiwiang N., Poyomtip T. The association of toll-like receptor 4 gene polymorphisms with primary open angle glaucoma susceptibility: a meta-analysis. Biosci Rep. 2019;39(4):BSR20190029. doi:10.1042/BSR20190029; Guimarãesa L.O., Bajayb M.M., Monteiroa E.F., Wunderlichc G., Santosd S.E., Kirchgattera K. Genetic ancestry effects on the distribution of toll-like receptors (TLRs) gene polymorphisms in a population of the Atlantic Forest, São Paulo, Brazil. Hum Immunol. 2018; 79(2):101-108. doi:10.1016/j.humimm.2017.11.007; Hamann L., Koch A., Sur S., Hoefer N., Glaeser C., Schulz S., Gross M., Franke A., Nöthlings U., Zacharowski K., Schumann R.R. Association of a common TLR-6 polymorphism with coronary artery disease – implications for healthy ageing? Immun Ageing. 2013;10(1):43. doi:10.1186/1742-4933-10-43; Hauser M.A., Allingham R.R., Linkroum K., Wang J., LaRocque-Abramson K., Figueiredo D., Santiago-Turla C., del Bono E.A., Haines J.L., Pericak-Vance M.A., Wiggs J.L. Distribution of WDR36 DNA sequence variants in patients with primary open-angle glaucoma. Invest Ophthalmol Vis Sci. 2006;47(6):2542-2546. doi:10.1167/iovs.05-1476; Jahantigh D., Salimi S., Alavi-Naini R., Emamdadi A., Osquee H.O., Mashhadi F.F. Association between TLR4 and TLR9 gene polymorphisms with development of pulmonary tuberculosis in Zahedan, Southeastern Iran. Sci World J. 2013;2013:534053. doi:10.1155/2013/534053; Jiang D., Ma G., Yang R., Li K., Fang M. Bayesian model selection for multiple QTLs mapping combining linkage disequilibrium and linkage. Genet Res. 2014;96:e10. doi:10.1017/S0016672314000135; Kania K.D., Haręża D., Wilczyński J.R., Wilczyński M., Jarych D., Malinowski A., Paradowska E. The Toll-like receptor 4 polymorphism Asp299Gly is associated with an increased risk of ovarian cancer. Cells. 2022;11(19):3137. doi:10.3390/cells11193137; Lin Z., Huang S., Sun J., Xie B., Zhong Y. Associations between TLR4 polymorphisms and open angle glaucoma: a meta-analysis. Biomed Res Int. 2019;2019:6707650. doi:10.1155/2019/6707650; Liu K., Wenling H., Jun Z., Yingxia Z., Hongbo C. Association of WDR36 polymorphisms with primary open angle glaucoma. A systematic review and meta-analysis. Medicine (Baltimore). 2017;96: e7291. doi:10.1097/MD.0000000000007291; Luo C., Yang X., Kain A.D., Powell D.W., Kuehn M.H., Tezel G. Glaucomatous tissue stress and the regulation of immune response through glial Toll-like receptor signaling. Invest Ophthalmol Vis Sci. 2010;51(11):5697-5707. doi:10.1167/iovs.10-5407; Ma L., Tang F., Chu W., Young A., Brelen M., Pang C., Chen L. Association of toll-like receptor 3 polymorphism rs3775291 with age-related macular degeneration : a systematic review and meta-analysis. Sci Rep. 2016;6:19718. doi:10.1038/srep19718; Macedo A.B., Novis C.L., Bosque A. Targeting cellular and tissue HIV reservoirs with Toll-like receptor agonists. Front Immunol. 2019;10: 2450. doi:10.3389/fimmu.2019.02450; Meer E., Aleman T.S., Ross A.G. WDR36-associated neurodegeneration: a case report highlights possible mechanisms of normal tension glaucoma. Genes. 2021;12:1624. doi:10.3390/genes12101624; Mulfaul K., Ozaki E., Fernando N., Brennan K., Chirco K., Connolly E., Greene C., Maminishkis A., Salomon R., Linetsky M., Natoli R., Mullins R., Campbell M., Doyle S. Toll-like receptor 2 facilitates oxidative damage-induced retinal degeneration. Cell Rep. 2020;30(7):2209-2224.е5. doi:10.1016/j.celrep.2020.01.064; Nakamura J., Meguro A., Ota M., Nomura E., Nishide T., Kashiwagi K., Mabuchi F., Iijima H., Kawase K., Yamamoto T., Nakamura M., Negi A., Sagara T., Nishida T., Inatani M., Tanihara H., Aihara M., Araie M., Fukuchi T., Abe H., Higashide T., Sugiyama K., Kanamoto T., Kiuchi Y., Iwase A., Ohno S., Inoko H., Mizuki N. Association of toll-like receptor 2 gene polymorphisms with normal tension glaucoma. Mol Vis. 2009;15:2905-2910; Narkevich A.N., Vinogradov K.A., Grjibovski A.M. Multiple comparisons in biomedical research: the problem and its solutions. Ekologiya Cheloveka = Human Ecology. 2020;27(10):55-64. doi:10.33396/1728-0869-2020-10-55-64 (in Russian); Ranjith-Kumar C.T., Miller W., Sun J., Xiong J., Santos J., Yarbrough I., Lamb R.J., Mills J., Duffy K., Hoose S., Cunningham M., Holzenburg A., Mbow M., Sarisky R., Kao C. Effects of single nucleotide polymorphisms on Toll-like receptor 3 activity and expression in cultured cells. J Biol Chem. 2007;282(24):17696-17705. doi:10.1074/jbc.M700209200; Sameer A.S., Nissar S. Toll-like receptors (TLRs): structure, functions, signaling, and role of their polymorphisms in colorectal cancer susceptibility. Biomed Res Int. 2021;2021:1157023. doi:10.1155/2021/1157023; Semlali A., Almutairi M., Rouabhia M., Reddy Parine N., Al Amri A., Al-Numair N.S., Hawsawi Y.M., Saud Alanazi M. Novel sequence variants in the TLR6 gene associated with advanced breast cancer risk in the Saudi Arabian population. PLoS One. 2018;13(11): e0203376. doi:10.1371/journal.pone.0203376; Soto I., Howell G.R. The complex role of neuroinflammation in glaucoma. Cold Spring Harb Perspect Med. 2014;4(8):a017269. doi:10.1101/cshperspect.a017269; Stashkevich D.S., Belyaeva S.V., Evdokimov A.V. Comparative assessment of genetic polymorphism of Toll-like 2 and 6 receptors predisposing for non-specific ulcerative colitis and irritable bowel syndrome in Russians from Chelyabinsk Region. Rossiiskii Immunologicheskii Zhurnal = Russ J Immunol. 2022;25(3):327-332. doi:10.46235/1028-7221-1139-CAO (in Russian); Stewart E.A., Wei R., Branch M.J., Sidney L.E., Amoaku W.M. Expression of Toll-like receptors in human retinal and choroidal vascular endothelial cells. Exp Eye Res. 2015;138:114-123. doi:10.1016/j.exer.2015.06.012; Tezel G. Molecular regulation of neuroinflammation in glaucoma: current knowledge and the ongoing search for new treatment targets. Prog Retin Eye Res. 2022;87:100998. doi:10.1016/j.preteyeres.2021.100998; Titi-Lartey O., Mohammed I., Amoaku W.M. Toll-like receptor signalling pathways and the pathogenesis of retinal diseases. Front Ophthalmol. 2022;2:850394. doi:10.3389/fopht.2022.850394; Törmänen S., Korppi M., Teräsjärvi J., Vononvirta J., Koponen P., Helminen M., He Q., Nuolivirta K. Polymorphism in the gene encoding toll-like receptor 10 may be associated with asthma after bronchiolitis. Sci Rep. 2017;7:2956. doi:10.1038/s41598-017-03429-x; Xiong Y., Song C., Snyder G.A., Sundberg E.J., Medvedev A.E. R753Q polymorphism inhibits Toll-like receptor (TLR) 2 tyrosine phosphorylation, dimerization with TLR6, and recruitment of myeloid differentiation primary response protein 88. J Biol Chem. 2012; 287(45):38327-38337. doi:10.1074/jbc.M112.375493; Zhang Y., Liu J., Wang C., Liu J., Lu W. Toll-Like receptors gene polymorphisms in autoimmune disease. Front Immunol. 2021;12: 672346. doi:10.3389/fimmu.2021.672346; https://vavilov.elpub.ru/jour/article/view/4484
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2Academic Journal
Authors: E. G. Khamaganova, S. P. Khizhinskiy, A. R. Abdrakhimova, E. P. Kuzminova, E. A. Leonov, O. S. Pokrovskaya, L. A. Kuzmina, E. N. Parovichnikova, Е. Г. Хамаганова, С. П. Хижинский, А. Р. Абдрахимова, Е. П. Кузьминова, Е. А. Леонов, О. С. Покровская, Л. А. Кузьмина, Е. Н. Паровичникова
Contributors: Авторы выражают благодарность всем сотрудникам ФГБУ «НМИЦ гематологии» Минздрава России, занимающихся трансплантацией аллогенных гемопоэтических стволовых клеток у больных с заболеваниями системы крови, без которых это исследование было бы неосуществимо.
Source: Medical Immunology (Russia); Том 26, № 2 (2024); 291-302 ; Медицинская иммунология; Том 26, № 2 (2024); 291-302 ; 2313-741X ; 1563-0625
Subject Terms: секвенирование следующего поколения, families, linkage disequilibrium, HLA-DPB1, transplantation, next-generation sequencing, семьи, неравновесное сцепление, трансплантация
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Relation: https://www.mimmun.ru/mimmun/article/view/2651/1903; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10653; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10654; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10655; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10656; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10657; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10658; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10659; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10660; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10661; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10662; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10663; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10669; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10670; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10671; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10672; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10673; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/10772; https://www.mimmun.ru/mimmun/article/downloadSuppFile/2651/12665; Бубнова Л.Н., Кузьмич Е.В., Павлова И.Е., Беляева Е.В., Терентьева М.А. Сравнительный анализ иммуногенетических характеристик потенциальных доноров гемопоэтических стволовых клеток регистров двух российских мегаполисов // Медицинская иммунология, 2022. Т. 24, № 5. С. 1047-1056. doi:10.15789/1563-0625-CAO-2539.; Логинова М.А., Парамонов И.В. Стратегия формирования регистра потенциальных доноров гемопоэтических стволовых клеток // Российский журнал детской гематологии и онкологии, 2020. Т. 7, № 4. С. 35-42.; Хамаганова Е.Г., Абдрахимова А.Р., Леонов Е.А., Хижинский С.П., Гапонова Т.В., Савченко В.Г. Секвенирование следующего поколения в HLA-типировании больных с показаниями к трансплантации аллогенных гемопоэтических стволовых клеток и их доноров // Гематология и трансфузиология, 2021. Т. 66, № 2. С. 206-217.; Хамаганова Е.Г., Леонов Е.А., Абдрахимова А.Р., Хижинский С.П., Гапонова Т.В., Савченко В.Г. HLA генетическое разнообразие русской популяции, выявленное методом секвенирования следующего поколения // Медицинская иммунология, 2021. Т. 23, № 3. 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HapLogic: a predictive human leukocyte antigen-matching algorithm to enhance rapid identification of the optimal unrelated hematopoietic stem cell sources for transplantation. Biol. Blood Marrow Transplant., 2016, Vol. 22, no. 11, pp. 2038-2046.; Excoffier L., Lischer H.E. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour., 2010, Vol. 10, no. 3, pp. 564-567.; Gragert L., Madbouly A., Freeman J., Maiers M. Six-locus high resolution HLA haplotype frequencies derived from mixed-resolution DNA typing for the entire US donor registry. Hum. Immunol., 2013, Vol. 74, no. 10, pp. 1313-1320.; Gragert L., Eapen M., Williams E., Freeman J., Spellman S., Baitty R., Hartzman R., Rizzo J.D., Horowitz M., Confer D., Maiers M. HLA match likelihoods for hematopoietic stem-cell grafts in the U.S. registry. N. Engl. J. Med., 2014, Vol. 371, no. 4, pp. 339-348.; Grundschober C., Sanchez-Mazas A., Excoffier L., Langaney A., Jeannet M., Tiercy J.M. HLA-DPB1 DNA polymorphism in the Swiss population: linkage disequilibrium with other HLA loci and population genetic affinities. Eur. J. of Immunogenet., 1994, Vol. 21, no. 3, pp. 143-157.; Gua Q., Chen J., Yao Y., Sun M., Shi L. Distribution of HLA-DRB1, DPB1 and DQB1 alleles and haplotypes in Mongolian Minority in China. Hum. Immunol., 2019, Vol. 80, no. 4, pp. 215-217.; Jeffreys A.J., Kauppi L., Neumann R. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet., 2001, Vol. 29, no. 2, pp. 217-222.; Kauppi L., Stumpf M.P., Jeffreys A.J. Localized breakdown in linkage disequilibrium does not always predict sperm crossover hot spots in the human MHC class II region. 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Genomics, 1997, Vol. 43, no. 2, pp. 226-231.; Nunes E., Heslop H., Fernandez-Vina M., Taves C., Wagenknecht D.R., Eisenbrey A.B., Fischer G., Poulton K., Wacker K., Hurley C.K., Noreen H., Sacchi N. Definitions of histocompatibility typing terms. Human Immunol., 2011, Vol. 72, no. 12, pp. 1214-1216.; Osoegawa K., Mallempati K.C., Gangavarapu S., Gangavarapu S., Oki A., Gendzekhadze K., Marino S.R., Brown N.K., Bettinotti M.P., Weimer E.T., Montero-Martín G., Creary L.E., Vayntrub T.A., Chang C.-J., Askar M., Mack S.J., Fernández-Viña M.A. HLA Alleles and Haplotypes Observed in 263 US Families. Hum. Immunol., 2019, Vol. 80, no. 9, pp. 644-660.; Passweg J.R., Baldomero H., Chabannon C., Basak G.W., de la Cámara R., Corbacioglu S., Dolstra H., Duarte R., Glass B., Greco R., Lankester A.C., Mohty M., Peffault de Latour R., Snowden J.A., Yakoub-Agha I., Kröger N. Hematopoietic cell transplantation and cellular therapy survey of the EBMT: monitoring of activities and trends over 30 years. 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3Academic Journal
Authors: N. V. Kocherina, Yu. V. Chesnokov, Н. В. Кочерина, Ю. В. Чесноков
Contributors: РФФИ
Source: Vegetable crops of Russia; № 1 (2016); 3-9 ; Овощи России; № 1 (2016); 3-9 ; 2618-7132 ; 2072-9146
Subject Terms: программное обеспечение, linkage disequilibrium, identification association marker-trait, software, неравновесное сцепление, установление ассоциаций маркер-признак
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4Academic Journal
Authors: Хамаганова, Екатерина, Бидерман, Б., Якутик, И., Кузьминова, Е., Юшкова, А., Кузьмина, Л., Паровичникова, Е., Судариков, А., Савченко, В.
Subject Terms: HLA-ТИПИРОВАНИЕ С ВЫСОКИМ РАЗРЕШЕНИЕМ, СЕКВЕНИРОВАНИЕ HLA-ГЕНОВ, НЕОДНОЗНАЧНОСТИ, ТРАНСПЛАНТАЦИЯ АЛЛОГЕННЫХ ГЕМОПОЭТИЧЕСКИХ СТВОЛОВЫХ КЛЕТОК, НЕРОДСТВЕННЫЙ ДОНОР, НЕРАВНОВЕСНОЕ СЦЕПЛЕНИЕ, HLA-ГАПЛОТИП
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5Academic Journal
Authors: Матюков, В., Тырина, Ю., Кантанен, Ю., Столповский, Ю.
Subject Terms: ДНК, МТДНК, ГАПЛОТИП, Y-ХРОМОСОМА, ХОЛМОГОРСКИЙ СКОТ, НЕРАВНОВЕСНОЕ СЦЕПЛЕНИЕ, ПОЛИМОРФИЗМ, МЕСТНЫЙ СКОТ, ЕДИНИЧНЫЙ НУКЛЕОТИД, МАРКЕР, ОЦЕНКА, ПЛЕМЕННАЯ ЦЕННОСТЬ, МОЛОЧНЫЙ СКОТ, ПОПУЛЯЦИОННЫЙ ГЕНОФОНД
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6Academic Journal
Source: Гематология и трансфузиология.
Subject Terms: 03 medical and health sciences, 0302 clinical medicine, HLA-ТИПИРОВАНИЕ С ВЫСОКИМ РАЗРЕШЕНИЕМ, СЕКВЕНИРОВАНИЕ HLA-ГЕНОВ, НЕОДНОЗНАЧНОСТИ, ТРАНСПЛАНТАЦИЯ АЛЛОГЕННЫХ ГЕМОПОЭТИЧЕСКИХ СТВОЛОВЫХ КЛЕТОК, НЕРОДСТВЕННЫЙ ДОНОР, НЕРАВНОВЕСНОЕ СЦЕПЛЕНИЕ, HLA-ГАПЛОТИП
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7Academic Journal
Source: Сельскохозяйственная биология.
Subject Terms: 2. Zero hunger, ДНК, МТДНК, ГАПЛОТИП, Y-ХРОМОСОМА, ХОЛМОГОРСКИЙ СКОТ, НЕРАВНОВЕСНОЕ СЦЕПЛЕНИЕ, ПОЛИМОРФИЗМ, МЕСТНЫЙ СКОТ, ЕДИНИЧНЫЙ НУКЛЕОТИД, МАРКЕР, ОЦЕНКА, ПЛЕМЕННАЯ ЦЕННОСТЬ, МОЛОЧНЫЙ СКОТ, ПОПУЛЯЦИОННЫЙ ГЕНОФОНД
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