pyhgf: A neural network library for predictive coding.

Authors: Legrand, Nicolas¹ (AUTHOR) nicolas.legrand@cas.au.dk, Weber, Lilian² (AUTHOR), Waade, Peter Thestrup¹ (AUTHOR), Møller Daugaard, Anna Hedvig¹ (AUTHOR), Khodadadi, Mojtaba³ (AUTHOR), Mikuš, Nace¹ (AUTHOR), Mathys, Christoph¹ (AUTHOR)

Source: PLoS Computational Biology. 6/22/2026, Vol. 22 Issue 6, p1-18. 18p.

Subject Terms: *Software libraries (Computer programming), *Computational neuroscience, *Bayesian analysis, *Time-varying networks, *Neuromorphics, *Hierarchical Bayes model

AMRerank: A Framework for Library Migration Recommendations Using Multi‐Agent Analysis and Data‐Driven Reranking.

Authors: Luo, Jie¹ (AUTHOR), Huang, Zijie^2,3 (AUTHOR) huangzj@sscenter.sh.cn, Gao, Jianhua¹ (AUTHOR), Sarwar, Nadeem (AUTHOR) nsarwar.bulc@bahria.edu.pk

Source: IET Software (Wiley-Blackwell). 1/6/2026, Vol. 2026, p1-18. 18p.

Subject Terms: *Software libraries (Computer programming), *Software engineering, *Recommender systems, *Maintenance costs, *Data analysis, Inference (Logic)

Towards a library for straight-line programs.

Authors: van der Hoeven, Joris¹ (AUTHOR) vdhoeven@lix.polytechnique.fr, Lecerf, Grégoire¹ (AUTHOR) lecerf@lix.polytechnique.fr

Source: Applicable Algebra in Engineering, Communication & Computing. Mar2026, Vol. 37 Issue 2, p331-387. 57p.

Subject Terms: *Software libraries (Computer programming), *Computer software, *Computational complexity

Extending SysML v2 for Safety ‐ Open‐Source Library for the System‐Theoretic Process Analysis.

Authors: Ahlbrecht, Alexander¹ (AUTHOR) alexander.ahlbrecht@dlr.de, Wagner, Florian² (AUTHOR), Durak, Umut¹ (AUTHOR)

Source: Systems Engineering. Apr2026, p1. 15p. 13 Illustrations.

Subject Terms: *Safety, *Software libraries (Computer programming), *Modeling languages (Computer science), *Autonomous vehicles, *System safety

The deal.II library, version 9.7.

Authors: Arndt, Daniel¹ (AUTHOR) arndtd@ornl.gov, Bangerth, Wolfgang^2,3 (AUTHOR) bangerth@colostate.edu, Bergbauer, Maximilian⁴ (AUTHOR) maximilian.bergbauer@tum.de, Blais, Bruno⁵ (AUTHOR) bruno.blais@polymtl.ca, Fehling, Marc⁶ (AUTHOR) marc.fehling@matfyz.cuni.cz, Gassmöller, Rene⁷ (AUTHOR) rgassmoeller@geomar.de, Heister, Timo⁸ (AUTHOR) heister@clemson.edu, Heltai, Luca⁹ (AUTHOR) luca.heltai@unipi.it, Kronbichler, Martin¹⁰ (AUTHOR) martin.kronbichler@rub.de, Maier, Matthias¹¹ (AUTHOR) maier@math.tamu.edu, Munch, Peter¹² (AUTHOR) muench@math.tu-berlin.de, Scheuerman, Sam² (AUTHOR) sam.scheuerman@colostate.edu, Turcksin, Bruno¹ (AUTHOR) turcksinbr@ornl.gov, Uzunbajakau, Siarhei¹³ (AUTHOR) info@cembooks.nl, Wells, David¹⁴ (AUTHOR) drwells@email.unc.edu, Wichrowski, Michał¹⁵ (AUTHOR) mt.wichrowsk@uw.edu.pl

Source: Journal of Numerical Mathematics. Dec2025, Vol. 33 Issue 4, p403-415. 13p.

Subject Terms: *Scientific computing, *Software libraries (Computer programming), *Mathematical analysis, *Software engineering, *Numerical analysis

BCI-Fuzz: Bug-triggering code innovated to fuzz deep learning libraries.

Authors: Zhao, Zhiyang¹ (AUTHOR), Pan, Limin¹ (AUTHOR), Shao, Siyuan¹ (AUTHOR), Luo, Senlin¹ (AUTHOR) luosenlin2019@126.com

Source: Journal of Systems & Software. Jul2026, Vol. 237, pN.PAG-N.PAG. 1p.

Subject Terms: *Software libraries (Computer programming), *Defect tracking (Computer software development), Computer software testing, Constraint satisfaction

SemuFuzz: An efficient fuzzing approach for deep learning libraries based on semantic representation.

Authors: Chen, Zhuoyi^1,2 (AUTHOR) 2212408053@stmail.ujs.edu.cn, Chen, Jinfu^1,2 (AUTHOR) jinfuchen@ujs.edu.cn, Cai, Saihua^1,2 (AUTHOR) caisaih@ujs.edu.cn, Chen, Jingyi^1,2 (AUTHOR) jychen@stmail.ujs.edu.cn, Gu, Wenjie³ (AUTHOR) wenjie.gu@connect.polyu.hk

Source: Journal of Systems & Software. Nov2026, Vol. 241, pN.PAG-N.PAG. 1p.

Subject Terms: *Software libraries (Computer programming), *Defect tracking (Computer software development), Computer software security, Encoding, Computer software testing

FM3VCF: A software library for accelerating the loading of large VCF files in genotype data analyses.

Authors: Zuo, Zhen¹ (AUTHOR), Li, Mingliang¹ (AUTHOR), Li, Qi¹ (AUTHOR), Li, Zhuo¹ (AUTHOR), Liu, Defu² (AUTHOR), Ye, Guanshi¹ (AUTHOR), Tang, You^1,2 (AUTHOR) tangyou9000@163.com

Source: PLoS ONE. 6/4/2025, Vol. 20 Issue 6, p1-12. 12p.

Subject Terms: *Software libraries (Computer programming), *Genome-wide association studies, *Genomics, *Data analysis, *Genotypes

ECP libraries and tools: An overview.

Authors: Heroux, Michael A¹ (AUTHOR) mheroux@acm.org, McInnes, Lois Curfman² (AUTHOR), Ahrens, James³ (AUTHOR), Gamblin, Todd⁴ (AUTHOR), Germann, Timothy C³ (AUTHOR), Li, Xiaoye Sherry⁵ (AUTHOR), Mohror, Kathryn⁴ (AUTHOR), Munson, Todd² (AUTHOR), Shende, Sameer⁶ (AUTHOR), Thakur, Rajeev² (AUTHOR), Vetter, Jeffrey⁷ (AUTHOR), Willenbring, James¹ (AUTHOR)

Source: International Journal of High Performance Computing Applications. Sep2024, Vol. 38 Issue 5, p381-408. 28p.

Subject Terms: *Software libraries (Computer programming), *Computer software industry, *Computer software development, Library software, Software development tools

Phylo-rs: an extensible phylogenetic analysis library in rust.

Authors: Vijendran, Sriram¹ (AUTHOR) sriramv@iastate.edu, Anderson, Tavis² (AUTHOR) tavis.anderson@usda.gov, Markin, Alexey² (AUTHOR) alexey.markin@usda.gov, Eulenstein, Oliver¹ (AUTHOR) oeulenst@iastate.edu

Source: BMC Bioinformatics. 7/29/2025, Vol. 26 Issue 1, p1-12. 12p.

Subject Terms: *Phylogeny, *Software libraries (Computer programming), *Markov chain Monte Carlo, *Programming languages, *Influenza viruses, *Data structures, *Open source software

Effective Python-frontend fuzzing for deep learning libraries with runtime coverage feedback.

Authors: Chen, Xu^1,2 (AUTHOR) chenxu@iie.ac.cn, Cui, Ningning^1,2 (AUTHOR) cuiningning@iie.ac.cn, Chen, Liwei^1,2 (AUTHOR), Shi, Gang^1,2 (AUTHOR), You, Ruibang^1,2 (AUTHOR), Xu, Qizhen³ (AUTHOR), Yin, Ruiping⁴ (AUTHOR)

Source: Information & Software Technology. Sep2026, Vol. 197, pN.PAG-N.PAG. 1p.

Subject Terms: *Software libraries (Computer programming), Computer software testing

Parsing GTF and FASTA files using the eccLib Library.

Authors: Chady, Tomasz¹ (AUTHOR), Filutowska, Zuzanna Karolina² (AUTHOR)

Source: Bioinformatics. Oct2025, Vol. 41 Issue 10, p1-5. 5p.

Subject Terms: *Bioinformatics software, *Software libraries (Computer programming), *Nucleotide sequence, *Application program interfaces, *Bioinformatics

Iterative Methods for Vecchia-Laplace Approximations for Latent Gaussian Process Models.

Authors: Kündig, Pascal^1,2 (AUTHOR) pascal.kuendig@hslu.ch, Sigrist, Fabio^1,3 (AUTHOR)

Source: Journal of the American Statistical Association. Jun2025, Vol. 120 Issue 550, p1267-1280. 14p.

Subject Terms: *Software libraries (Computer programming), *Freeware (Computer software), Conjugate gradient methods, Gaussian processes, Decomposition method

Interca: an R library implementing "automatic" interpretation of results of multiple correspondence analysis (MCA).

Authors: Moschidis, Stratos^1,2 (AUTHOR) smos@iti.gr, Markos, Angelos³ (AUTHOR) amarkos@eled.duth.gr, Ioannidis, Dimosthenis¹ (AUTHOR) djoannid@iti.gr

Source: Applied Computing & Informatics. 2026, Vol. 22 Issue 3/4, p289-299. 11p.

Subject Terms: Multiple correspondence analysis (Statistics), Software libraries (Computer programming), Open source software, Data visualization, Coordinate axes (Mathematics), Application software

Global receptive field graph attention network for unsupervised domain adaptation fault diagnosis in variable operating conditions.

Authors: Cai, Meiling¹ (AUTHOR) caimeiling_hunnu@163.com, Chen, Sheng¹ (AUTHOR) chens27@hunnu.edu.cn, Liu, Jinping¹ (AUTHOR) ljp202518@163.com, Yang, Yimei^1,2,3 (AUTHOR) yangym@hunnu.edu.cn, Cen, Lihui⁴ (AUTHOR) lhcen@csu.edu.cn

Source: Journal of Intelligent Manufacturing. Jun2025, Vol. 36 Issue 5, p3285-3312. 28p.

Subject Terms: *Software libraries (Computer programming), *Machinery, Intelligent networks, Deep learning, Diagnosis

Gsplat: An Open-Source Library for Gaussian Splatting.

Authors: Ye, Vickie VYE@BERKELEY.EDU, Li, Ruilong RUILONGLI@BERKELEY.EDU, Kerr, Justin JUSTINKERR@BERKELEY.EDU, Turkulainen, Matias¹ MATIAS.TURKULAINEN@AALTO.FI, Yi, Brent BRENTYI@BERKELEY.EDU, Pan, Zhuoyang² PANZHY@SHANGHAITECH.EDU.CN, Seiskari, Otto OTTO.SEISKARI@SPECTACULARAI.COM, Ye, Jianbo JIANBOYE.AI@GMAIL.COM, Hu, Jeffrey HUJH14@GMAIL.COM, Tancik, Matthew MATT@LUMALABS.AI, Kanazawa, Angjoo KANAZAWA@EECS.BERKELEY.EDU

Source: Journal of Machine Learning Research. Jan-Dec2025, Vol. 26, p1-17. 17p.

Subject Terms: *Software libraries (Computer programming), *Parallel programming, *Mathematical optimization, Python programming language, Computer memory management, Three-dimensional imaging

Axios Software Tool Used by Millions Compromised in Hack.

Authors: Gallagher, Ryan (AUTHOR)

Source: Claims Journal. 3/31/2026, pN.PAG-N.PAG. 1p.

Subject Terms: *Software libraries (Computer programming), *Computer security vulnerabilities, *Data security failures, *Malware, *Security systems

Martinize2 and Vermouth provide a unified framework for molecular topology generation.

Authors: Kroon, Peter C.¹, Grünewald, Fabian^1,2,3 Fabian.Gruenewald@h-its.org, Barnoud, Jonathan^1,4, van Tilburg, Marco¹, Brasnett, Chris¹, Souza, Paulo C. T.^1,5,6, Wassenaar, Tsjerk A.¹, Marrink, Siewert J.¹ s.j.marrink@rug.nl

Source: eLife. 11/20/2025, Vol. 14, p1-30. 30p.

Subject Terms: *Molecular dynamics, *Software libraries (Computer programming), *Protein structure, *Simulation methods & models, *Biological systems

Ginkgo - A math library designed to accelerate Exascale Computing Project science applications.

Authors: Cojean, Terry¹ (AUTHOR), Nayak, Pratik¹ (AUTHOR), Ribizel, Tobias¹ (AUTHOR), Beams, Natalie² (AUTHOR), Mike Tsai, Yu-Hsiang¹ (AUTHOR), Koch, Marcel¹ (AUTHOR), Göbel, Fritz¹ (AUTHOR), Grützmacher, Thomas¹ (AUTHOR), Anzt, Hartwig^2,3 (AUTHOR) hartwig.anzt@tum.de

Source: International Journal of High Performance Computing Applications. Nov2024, Vol. 38 Issue 6, p568-584. 17p.

Subject Terms: *Software libraries (Computer programming), *Electric power distribution grids, Mathematical forms, Library design & construction, Science projects

Bridging the Security Gap in SDLC: Challenges and Solutions for Local IT Firms in Bangladesh.

Authors: Ibrahim, Fatima¹ (AUTHOR) mahady@iub.edu.bd, Ashfaque, Youhana Ebnul¹ (AUTHOR), Roknuzzaman, Md.¹ (AUTHOR), Islam, Merajul¹ (AUTHOR), Sumi, Sadia Jaman¹ (AUTHOR), Nahar, Nujhat¹ (AUTHOR), Hasan, Mahady¹ (AUTHOR) mahady@iub.edu.bd

Source: EPJ Web of Conferences. 6/18/2025, Vol. 328, p1-11. 11p.

Subject Terms: *Information technology industry, *Software libraries (Computer programming), *Multi-factor authentication, *Security systems, *Burglary protection