Synthetic DNA-based Swimmers Driven by Enzyme Catalysis

Authors: Tania Patiño Padial, Erica Del Grosso, Serena Gentile, Lorena Baranda Pellejero, Rafael Mestre, Lars J. M. M. Paffen, Samuel Sánchez, Francesco Ricci

Contributors: Patiño Padial, T, Del Grosso, E, Gentile, S, Baranda Pellejero, L, Mestre, R, Paffen, Ljmm, Sánchez, S, Ricci, F

Source: Journal of the American Chemical Society. 146:12664-12671

Subject Terms: 0301 basic medicine, Urease/chemistry, Hydrogen Peroxide/chemistry, DNA, Hydrogen Peroxide, Settore CHEM-01/A - Chimica analitica, Catalase, Urease, 01 natural sciences, Nanostructures, 0104 chemical sciences, Catalase/chemistry, 03 medical and health sciences, Settore CHIM/01, Biocatalysis, DNA/chemistry, Nanostructures/chemistry

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38587543
https://research.tue.nl/en/publications/61b118eb-01d2-4909-9613-58648625cd46
https://doi.org/10.1021/jacs.4c02094

Self‐Regulated and Temporal Control of a 'Breathing' Microgel Mediated by Enzymatic Reaction

Authors: Hailong Che, Bastiaan C. Buddingh', Jan C. M. van Hest

Source: Angew Chem Int Ed Engl
Angewandte Chemie International Edition

Subject Terms: self-regulation, 02 engineering and technology, enzyme catalysis, 01 natural sciences, Fluorescence, non-equilibrium processes, Gels/chemistry, Urea, Particle Size, Urease/chemistry, Immobilized/chemistry, breathing microgels, Hydrogen-Ion Concentration, feedback mechanism, Enzymes, Immobilized, Urease, Communications, Enzymes, 0104 chemical sciences, Nylons, Biocatalysis, Methacrylates, Methacrylates/chemistry, Urea/chemistry, 0210 nano-technology, Gels, Nylons/chemistry

Access URL: https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/ange.201706716
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/anie.201706716
https://pubmed.ncbi.nlm.nih.gov/28772021
https://research.tue.nl/en/publications/6352e8e3-2fc5-4a87-a42d-e0b7fcb610f6
https://doi.org/10.1002/anie.201706716

Bioinorganic Chemistry of Bismuth and Antimony: Target Sites of Metallodrugs

Authors: Ge, R, Sun, H

Source: Accounts of Chemical Research. 40:267-274

Subject Terms: Antimony, Glutathione - Analogs & Derivatives - Chemistry - Metabolism, Transferrin - Chemistry - Metabolism, Spectrometry, Mass, Electrospray Ionization, Magnetic Resonance Spectroscopy, Time Factors, Spermidine, Proteins - Chemistry - Metabolism, 01 natural sciences, Spermidine - Analogs & Derivatives - Chemistry - Metabolism, Enzymes - Chemistry - Metabolism, Cations, Bismuth - Chemistry - Metabolism, Urease - Chemistry - Metabolism, Nucleotides - Chemistry - Metabolism, Molecular Structure, Spectrometry, Nucleotides, Electrospray Ionization, Transferrin, Proteins, Mass, Antimony - Chemistry - Metabolism, Glutathione, Urease, Enzymes, 3. Good health, 0104 chemical sciences, Lactoferrin, Histidine-Rich Glycoprotein, Drug Design, Bismuth, Lactoferrin - Chemistry - Metabolism, Protein Binding

Access URL: https://pubmed.ncbi.nlm.nih.gov/17330963
http://hdl.handle.net/10722/168109

Self-regulated and temporal control of a 'breathing' microgel mediated by enzymatic reaction

Authors: Che, H., Buddingh, B.C., van Hest, J.C.M.

Source: Che, H, Buddingh, B C & van Hest, J C M 2017, 'Self-regulated and temporal control of a "breathing" microgel mediated by enzymatic reaction', Angewandte Chemie - International Edition, vol. 56, no. 41, 41, pp. 12581-12585. https://doi.org/10.1002/anie.201706716

Subject Terms: breathing microgels, enzyme catalysis, feedback mechanism, non-equilibrium processes, self-regulation, Biocatalysis, Fluorescence, Particle Size, Nylons/chemistry, Urease/chemistry, Enzymes, Immobilized/chemistry, Methacrylates/chemistry, Urea/chemistry, Gels/chemistry, Hydrogen-Ion Concentration

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Relation: info:eu-repo/semantics/altIdentifier/pmid/28772021; info:eu-repo/semantics/altIdentifier/wos/000411810600028; info:eu-repo/semantics/altIdentifier/pissn/0570-0833; info:eu-repo/semantics/altIdentifier/eissn/1521-3773

Availability: https://research.tue.nl/en/publications/6352e8e3-2fc5-4a87-a42d-e0b7fcb610f6
https://doi.org/10.1002/anie.201706716
https://pure.tue.nl/ws/files/79763571/cheself_2017.pdf
https://www.scopus.com/pages/publications/85029916633

Molecular characterization of Bacillus pasteurii UreE, a metal-binding chaperone for the assembly of the urease active site

Authors: Ciurli, Stefano, Safarov, Niyaz, Miletti, Silvia, Dikiy, Alexander, Christensen, Suzanne K, Kornetzky, Katja, Bryant, Donald A, Vandenberghe, Isabel, Devreese, Bart, Samyn, Bart, Remaut, Han, Van Beeumen, Jozef

Contributors: Department of Bio-engineering Sciences, Structural Biology Brussels, FORMER_Structural Biology Brussels

Source: JBIC Journal of Biological Inorganic Chemistry. 7:623-631

Subject Terms: 0301 basic medicine, Spectrometry, Mass, Electrospray Ionization, Nickel/metabolism, Protein Conformation, Molecular Sequence Data, Molecular Chaperones/chemistry, Recombinant Proteins/chemistry, Bacillus, Protein Structure, Secondary, 03 medical and health sciences, Bacterial Proteins, Bacterial Proteins/chemistry, Nickel, Histidine, Amino Acid Sequence, Cloning, Molecular, Nuclear Magnetic Resonance, Biomolecular, Bacillus/chemistry, Urease/chemistry, 0303 health sciences, Binding Sites, Sequence Homology, Amino Acid, Histidine/metabolism, Carrier Proteins/chemistry, Zinc/chemistry, Urease, Recombinant Proteins, Zinc, Carrier Proteins, Molecular Chaperones

Access URL: https://pubmed.ncbi.nlm.nih.gov/12072968
https://hdl.handle.net/20.500.14017/d64c4d47-a092-40ff-8c4a-dc662be51368
https://biblio.vub.ac.be/vubir/molecular-characterization-of-bacillus-pasteurii-uree-a-metalbinding-chaperone-for-the-assembly-of-the-urease-active-site(d64c4d47-a092-40ff-8c4a-dc662be51368).html
https://doi.org/10.1007/s00775-002-0341-7

Structural Basis for Ni2+Transport and Assembly of the Urease Active Site by the Metallochaperone UreE from Bacillus pasteurii

Authors: Remaut, H, Safarov, N, Ciurli, S, Van Beeumen, J

Contributors: Department of Bio-engineering Sciences, Structural Biology Brussels, FORMER_Structural Biology Brussels

Source: Journal of Biological Chemistry. 276:49365-49370

Subject Terms: Models, Molecular, 0301 basic medicine, Nickel/metabolism, Protein Conformation, Molecular Chaperones/chemistry, Bacillus, Crystallography, X-Ray, Biochemistry, ion transport, 03 medical and health sciences, Bacterial Proteins, Bacterial Proteins/chemistry, Nickel, Protein Structure, Quaternary, Molecular Biology, Bacillus/chemistry, Urease/chemistry, 0303 health sciences, Binding Sites, Ion Transport, Carrier Proteins/chemistry, Cell Biology, Zinc/chemistry, Urease, EUTOPIA Alliance, Zinc, Carrier Proteins, Molecular Chaperones

Access URL: http://www.jbc.org/content/276/52/49365.full.pdf
https://pubmed.ncbi.nlm.nih.gov/11602602
https://www.openaccessrepository.it/record/94537
https://biblio.vub.ac.be/vubir/structural-basis-for-ni2-transport-and-assembly-of-the-urease-active-site-by-the-metallochaperone-uree-from-bacillus-pasteurii(61ce05d8-7f09-4a6c-b79a-9d56d38eab3e).html

Assembly of preactivation complex for urease maturation in Helicobacter pylori: crystal structure of UreF-UreH protein complex

Authors: Fong, Yu Hang, Wong, Ho Chun, Chuck, Chi Pang, Chen, Yu Wai, Sun, Hongzhe, Wong, Kam-Bo

Source: The Journal of biological chemistry. 286(50)

Subject Terms: 0301 basic medicine, Protein Structure, Secondary, Carrier Proteins - chemistry - genetics - metabolism, 0303 health sciences, Crystallography, Crystallography, X-Ray - methods, X-Ray - methods, Helicobacter pylori, Urease - chemistry - genetics - metabolism, Bacterial Proteins - chemistry - genetics - metabolism, Membrane Transport Proteins, Phosphate-Binding Proteins, Crystallography, X-Ray, Urease, Protein Structure, Secondary, 03 medical and health sciences, Helicobacter pylori - genetics - metabolism, Bacterial Proteins, X-Ray, Carrier Proteins, Protein Binding

Access URL: https://pubmed.ncbi.nlm.nih.gov/22013070
http://hdl.handle.net/10722/159373

Differential regulation of amidase- and formamidase-mediated ammonia production by the Helicobacter pylori fur repressor.

Authors: Vliet, A.H.M. (Arnoud) van, Stoof, J. (Jeroen), Poppelaars, S.W. (Sophie), Bereswill, S. (Stefan), Homuth, G. (Georg), Kist, M. (Manfred), Kuipers, E.J. (Ernst), Kusters, J.G. (Johannes)

Source: Journal of Biological Chemistry vol. 278 no. 11, pp. 9052-9057

Subject Terms: Gene Expression Regulation, Amidohydrolases/*biosynthesis/metabolism, Ammonia/*metabolism, Bacterial Proteins/chemistry/*metabolism, Base Sequence, DNA/metabolism, Helicobacter pylori/*metabolism/pathogenicity, Humans, Iron-Regulatory Proteins/*metabolism, Iron/pharmacology, Models, Biological, Molecular Sequence Data, Nucleic Acid Hybridization, Plasmids/metabolism, Promoter Regions (Genetics), Protein Binding, RNA/metabolism, Repressor Proteins/chemistry/*metabolism, Research Support, Non-U.S. Gov't, Substrate Specificity, Transcription, Genetic, Urease/chemistry

File Description: application/pdf

Relation: https://repub.eur.nl/pub/13127; urn:hdl:1765/13127

Availability: https://repub.eur.nl/pub/13127
https://doi.org/10.1074/jbc.M207542200

Synthetic DNA-based Swimmers Driven by Enzyme Catalysis

Authors: Patiño Padial, Tania, Del Grosso, Erica, Gentile, Serena, Baranda Pellejero, Lorena, Mestre, Rafael, Paffen, Lars J.M.M., Sánchez, Samuel, Ricci, Francesco

Source: Journal of the American Chemical Society vol.146 (2024) date: 2024-05-08 nr.18 p.12664-12671 [ISSN 0002-7863]

Index Terms: DNA/chemistry, Urease/chemistry, Catalase/chemistry, Nanostructures/chemistry, Biocatalysis, Hydrogen Peroxide/chemistry, Tijdschriftartikel, Article

URL: https://research.tue.nl/en/publications/61b118eb-01d2-4909-9613-58648625cd46

Inactivation of urease by nitrogen mustard and a comparison with inactivation by x-rays.

Authors: LEWIS SE, WILLS ED, WORMALL A

Source: International journal of radiation biology and related studies in physics, chemistry, and medicine [Int J Radiat Biol Relat Stud Phys Chem Med] 1961 Nov; Vol. 3, pp. 657-70.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 0374725 Publication Model: Print Cited Medium: Print ISSN: 0020-7616 (Print) Linking ISSN: 00207616 NLM ISO Abbreviation: Int J Radiat Biol Relat Stud Phys Chem Med Subsets: OLDMEDLINE

MeSH Terms: Mechlorethamine* , Radiation Effects*, Nitrogen Mustard Compounds/*pharmacology , Urease/*chemistry, X-Rays

Influence of enzyme and substrate concentrations on the decomposition of urea by commercial urease and urease obtained from Glycine soja beans in phosphate buffer.

Authors: BAHADUR K, CHANDRA V

Source: Enzymologia [Enzymologia] 1961 Jun 30; Vol. 23, pp. 117-22.

Publication Type: Journal Article

Journal Info: Publisher: Junk [etc.] Country of Publication: Netherlands NLM ID: 0427141 Publication Model: Print Cited Medium: Print ISSN: 0013-9424 (Print) Linking ISSN: 00139424 NLM ISO Abbreviation: Enzymologia Subsets: OLDMEDLINE

MeSH Terms: Fabaceae* , Glycine* , Phosphates*, Glycine max/*chemistry , Urea/*chemistry , Urease/*chemistry

Relationship of drug resistance to the production of urease and citrase by some coliform bacilli: a preliminary report.

Authors: SENECA H, LATTIMER JK, ROBERTS MS, TROC OK, MILNER P, PEER P

Source: Antibiotics annual [Antibiot Annu] 1959-1960; Vol. 7, pp. 834-8.

Publication Type: Journal Article

Journal Info: Publisher: Country of Publication: United States NLM ID: 15110220R Publication Model: Print Cited Medium: Print ISSN: 0570-3131 (Print) Linking ISSN: 05703131 NLM ISO Abbreviation: Antibiot Annu Subsets: OLDMEDLINE

MeSH Terms: Drug Resistance* , Enterobacteriaceae* , Multienzyme Complexes* , Oxo-Acid-Lyases*, Lyases/*chemistry , Urease/*chemistry

[Investigation of the urea fermentation capacity and indole production of bacteria in the same medium].

Authors: ANG O

Source: Tip Fakultesi mecmuasi [Tip Fak Mecm] 1961; Vol. 24, pp. 593-9.

Publication Type: Journal Article

Journal Info: Publisher: Istanbul University Country of Publication: Turkey NLM ID: 0414152 Publication Model: Print Cited Medium: Print ISSN: 0047-1623 (Print) NLM ISO Abbreviation: Tip Fak Mecm Subsets: OLDMEDLINE

MeSH Terms: Fermentation* , Urea*, Bacteria/*metabolism , Indoles/*metabolism , Lyases/*chemistry , Urease/*chemistry

Preparation of urease crystal from jack bean.

Authors: HANABUSA K

Source: Nature [Nature] 1962 Mar 17; Vol. 193, pp. 1078.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Print ISSN: 0028-0836 (Print) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: OLDMEDLINE

MeSH Terms: Plants/*metabolism , Urease/*chemistry

13C kinetic isotope effects in the urease-catalyzed hydrolysis of urea. I. Temperature dependence.

Authors: LYNN KR, YANKWICH PE

Source: Biochimica et biophysica acta [Biochim Biophys Acta] 1962 Jan 29; Vol. 56, pp. 512-30.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Pub. Co Country of Publication: Netherlands NLM ID: 0217513 Publication Model: Print Cited Medium: Print ISSN: 0006-3002 (Print) Linking ISSN: 00063002 NLM ISO Abbreviation: Biochim Biophys Acta Subsets: OLDMEDLINE

MeSH Terms: Carbon* , Carbon Radioisotopes* , Isotopes* , Temperature* , Urea*, Urease/*chemistry, Hydrolysis ; Kinetics

[A method for the quantitative determination of the urease activity in microorganisms].

Authors: FRADKIN VA

Source: Zhurnal mikrobiologii, epidemiologii i immunobiologii [Zh Mikrobiol Epidemiol Immunobiol] 1962 Mar; Vol. 33, pp. 42-6.

Publication Type: Journal Article

Journal Info: Publisher: FBUN T︠S︡NII Ėpidemiologii Rospotrebnadzora Country of Publication: Russia (Federation) NLM ID: 0415217 Publication Model: Print Cited Medium: Print ISSN: 0372-9311 (Print) Linking ISSN: 03729311 NLM ISO Abbreviation: Zh Mikrobiol Epidemiol Immunobiol Subsets: OLDMEDLINE

MeSH Terms: Bacteria/*chemistry , Urease/*chemistry

A rapid method for determination of urease production.

Authors: HURLBURT L

Source: American journal of clinical pathology [Am J Clin Pathol] 1961 Dec; Vol. 36, pp. 532.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0370470 Publication Model: Print Cited Medium: Print ISSN: 0002-9173 (Print) Linking ISSN: 00029173 NLM ISO Abbreviation: Am J Clin Pathol Subsets: OLDMEDLINE

MeSH Terms: Urease/*chemistry

Modified reagents for determination of urea and ammonia.

Authors: CHANEY AL, MARBACH EP

Source: Clinical chemistry [Clin Chem] 1962 Apr; Vol. 8, pp. 130-2.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9421549 Publication Model: Print Cited Medium: Print ISSN: 0009-9147 (Print) Linking ISSN: 00099147 NLM ISO Abbreviation: Clin Chem Subsets: OLDMEDLINE

MeSH Terms: Indicators and Reagents*, Ammonia/*chemistry , Indophenol/*chemistry , Urea/*chemistry , Urease/*chemistry

Inactivation of urease by x-rays.

Authors: LEWIS SE, WILLS ED, WORMALL A

Source: International journal of radiation biology and related studies in physics, chemistry, and medicine [Int J Radiat Biol Relat Stud Phys Chem Med] 1961 Nov; Vol. 3, pp. 647-56.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 0374725 Publication Model: Print Cited Medium: Print ISSN: 0020-7616 (Print) Linking ISSN: 00207616 NLM ISO Abbreviation: Int J Radiat Biol Relat Stud Phys Chem Med Subsets: OLDMEDLINE

MeSH Terms: Radiation Effects*, Urease/*chemistry, X-Rays

Fractionation of urease on CM-cellulose.

Authors: SHADAKSHARASWAMY M, HILL RM

Source: Archives of biochemistry and biophysics [Arch Biochem Biophys] 1962 Jun; Vol. 97, pp. 607-9.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 0372430 Publication Model: Print Cited Medium: Print ISSN: 0003-9861 (Print) Linking ISSN: 00039861 NLM ISO Abbreviation: Arch Biochem Biophys Subsets: OLDMEDLINE

MeSH Terms: Cellulose* , Chemical Fractionation* , Chemistry Techniques, Analytical*, Urease/*chemistry